Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004417.1

Orthogroup ID

OG0031302

Physical Location & Seq

Genomic Coordinates Forward (+)

42985 .. 43410

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004417.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgaaacccatcactcatttcctctccctccttgttctcctactctgcctcctcgccaccgtccactgcggagggcacgactaccaggacgcattgtcgaaatgcatactctttttcgaggaccagaggtcgggggttctgcctcgggaccaacgccagtcgtggcgggctaattccgggttgattgatggctggacttacaatactgacctcaccggcggctactacgacgccggagacaacgtcaagtttgggttcccgatggccttcacgaccacaagtccacaatgctggcgtggagtgtcatcgagtttggggactccatgcctcccaatgagcacaggaatgcgctggttgcccttcgttgggggacggatgacctcctcaaaacggtgtcgcagcccaataggattttcgtacaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009900 GO:0009987 GO:0010047 GO:0010154 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0045229 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:1990059

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

141

Amino Acids

15.7

Weight (kDa)

9.02

Isoelectric Point (pI)

54.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031302)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004417.1_g000006
rosa_samantha	Rh6CG158900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	69, 166, 219
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	4 cut(s)	130, 365, 366, 390
AhdI	GACNNNNNGTC	3 cut(s)	94, 127, 279
AjnI	CCWGG	1 cut(s)	84
AjuI	GAANNNNNNNTTGG	1 cut(s)	397
Alw21I	GWGCWC	1 cut(s)	341
Alw26I	GTCTC	1 cut(s)	231
Ama87I	CYCGRG	1 cut(s)	144
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	2 cut(s)	121, 148
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	205
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	2 cut(s)	121, 148
BaeGI	GKGCMC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	341
BbvI	GCAGC	1 cut(s)	411
BccI	CCATC	3 cut(s)	17, 182, 256
BciT130I	CCWGG	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	231
BisI	GCNGC	2 cut(s)	220, 400
BlsI	GCNGC	2 cut(s)	221, 401
Bme1390I	CCNGG	2 cut(s)	86, 178
Bme18I	GGWCC	2 cut(s)	121, 148
BmeRI	GACNNNNNGTC	3 cut(s)	94, 127, 279
BmeT110I	CYCGRG	1 cut(s)	144
BmgT120I	GGNCC	2 cut(s)	121, 148
BmiI	GGNNCC	2 cut(s)	149, 257
BmrFI	CCNGG	2 cut(s)	86, 178
BpuMI	CCSGG	1 cut(s)	178
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	143
BsaXI	ACNNNNNCTCC	4 cut(s)	33, 63, 228, 258
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 365, 366, 390
Bse118I	RCCGGY	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	143
BseGI	GGATG	1 cut(s)	381
BseLI	CCNNNNNNNGG	4 cut(s)	130, 365, 366, 390
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	2 cut(s)	41, 373
BseSI	GKGCMC	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	411
BshFI	GGCC	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	341
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	3 cut(s)	177, 216, 234
BslFI	GGGAC	3 cut(s)	161, 331, 384
BslI	CCNNNNNNNGG	4 cut(s)	130, 365, 366, 390
BsmAI	GTCTC	1 cut(s)	231
BsmFI	GGGAC	3 cut(s)	161, 331, 384
BsmI	GAATGC	1 cut(s)	351
BsnI	GGCC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	144
Bsp1286I	GDGCHC	2 cut(s)	78, 341
BspACI	CCGC	3 cut(s)	69, 166, 219
BspANI	GGCC	1 cut(s)	266
BspLI	GGNNCC	2 cut(s)	149, 257
BsrFI	RCCGGY	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	157
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	143
BssNI	GRCGYC	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	2 cut(s)	61, 393
BstACI	GRCGYC	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	168, 293
BstF5I	GGATG	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	351
BstMAI	GTCTC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstNI	CCWGG	1 cut(s)	86
BstSCI	CCNGG	2 cut(s)	84, 176
BstSLI	GKGCMC	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	411
BstXI	CCANNNNNNTGG	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	381
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	2 cut(s)	168, 293
CfoI	GCGC	1 cut(s)	351
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	2 cut(s)	121, 148
CseI	GACGC	2 cut(s)	98, 239
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	1 cut(s)	324
CviJI	RGCY	5 cut(s)	170, 192, 222, 266, 402
CviKI_1	RGCY	5 cut(s)	170, 192, 222, 266, 402
CviQI	GTAC	1 cut(s)	418
DriI	GACNNNNNGTC	3 cut(s)	94, 127, 279
Eam1105I	GACNNNNNGTC	3 cut(s)	94, 127, 279
Eco47I	GGWCC	2 cut(s)	121, 148
Eco88I	CYCGRG	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	107
FaeI	CATG	1 cut(s)	327
FaiI	YATR	2 cut(s)	107, 325
FaqI	GGGAC	3 cut(s)	161, 331, 384
FatI	CATG	1 cut(s)	323
FauI	CCCGC	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	220, 400
FokI	GGATG	1 cut(s)	388
Fsp4HI	GCNGC	2 cut(s)	220, 400
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	2 cut(s)	220, 400
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	3 cut(s)	177, 216, 234
HgaI	GACGC	2 cut(s)	98, 239
HhaI	GCGC	1 cut(s)	351
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	327
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HinfI	GANTC	1 cut(s)	319
HpaII	CCGG	3 cut(s)	177, 216, 234
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	2 cut(s)	64, 284
Hpy188III	TCNNGA	3 cut(s)	146, 259, 271
Hpy8I	GTNNAC	2 cut(s)	64, 284
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	277, 370
HpyCH4III	ACNGT	2 cut(s)	61, 393
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	327
HspAI	GCGC	1 cut(s)	349
Lsp1109I	GCAGC	1 cut(s)	411
MaeII	ACGT	1 cut(s)	243
MhlI	GDGCHC	2 cut(s)	78, 341
MluCI	AATT	1 cut(s)	172
MlyI	GAGTC	1 cut(s)	313
Mph1103I	ATGCAT	1 cut(s)	107
MslI	CAYNNNNRTG	1 cut(s)	344
MspI	CCGG	3 cut(s)	177, 216, 234
MspR9I	CCNGG	2 cut(s)	86, 178
Mva1269I	GAATGC	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	355
NciI	CCSGG	1 cut(s)	178
NlaIII	CATG	1 cut(s)	327
NlaIV	GGNNCC	2 cut(s)	149, 257
NsiI	ATGCAT	1 cut(s)	107
PctI	GAATGC	1 cut(s)	351
PflFI	GACNNNGTC	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	221, 401
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	149, 257
PspPI	GGNCC	2 cut(s)	121, 148
PsyI	GACNNNGTC	1 cut(s)	242
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
RseI	CAYNNNNRTG	1 cut(s)	344
SatI	GCNGC	2 cut(s)	220, 400
Sau96I	GGNCC	2 cut(s)	121, 148
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	2 cut(s)	86, 178
SduI	GDGCHC	2 cut(s)	78, 341
SetI	ASST	4 cut(s)	131, 213, 246, 383
SgrAI	CRCCGGYG	1 cut(s)	215
SinI	GGWCC	2 cut(s)	121, 148
SmiMI	CAYNNNNRTG	1 cut(s)	344
Sse9I	AATT	1 cut(s)	172
SsiI	CCGC	3 cut(s)	69, 166, 219
StyD4I	CCNGG	2 cut(s)	84, 176
TaaI	ACNGT	2 cut(s)	61, 393
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	3 cut(s)	98, 117, 308
TasI	AATT	1 cut(s)	172
TauI	GCSGC	1 cut(s)	222
TscAI	CASTG	1 cut(s)	71
TseI	GCWGC	1 cut(s)	399
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	388
TspRI	CASTG	1 cut(s)	71
Tth111I	GACNNNGTC	1 cut(s)	242
VpaK11BI	GGWCC	2 cut(s)	121, 148
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.