Rmu_sc0004618.1_g000019

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004618.1
OG0031312
Physical Location & Seq
Forward (+)
68508 .. 71868
3361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004618.1_g000019.1.cds

Sequence Viewer

Length: 957 bp
atgaattcgaatagaagcgaagaagcttccagatctgagattgaggagcgtcggagcgaagcgaagactcggcggttttggggtattcaattctttgctttgcttgtgaggtgtggcagtggagaagttccgaagaagaagaagaagaagaaaatgggagctttctctgcatctgggtcctacgtcggccacgtggactccagggagcgcttcgtttatttatttaattacgaggaagtggcgctggaagacgctggaggagggagggatagagagagagctctgtgtaccccagatttgggtgcccaaatcagttcttggtattaccggtgtcgacgagtaagcggtttgcctgcctcgcccgtcgacgtggaagctaggttcgagtcgttggagacacgtgagtgcgatggtggtggaggtgaggcacagcggcacatgacgccgacgcagttggcctcgacgaaaggatcggcggcgtactccatggccgatttcagatcttcgacaagccagtcttcgggaagactctgtccttcattttgggggacgaaattgaaattgaaattgggattgggattgggatttggatttggatttggttgggttctctgtaaacttgctgggaggaggaggcgtgggcggattcgtcctcttcagcaatgggctggtggtgcgcttgatcggttggttgggagtgaaggtcggcagaggcagagggaggtgttcgagcggcggaggaggaggaggcagttgctcagtggcggtggagtccagtggccgctagaaggacaagcactacgggccgaaacagcgcccaaagcaagagccccggctttcttcgagcgggagcccagttgggaaactctcgcgagggcccagctggagcccattgaaccaggggaacaagtagtagtcattaagcttcccagcccacttgaggctcagagggactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

35.62

Weight (kDa)

10.05

Isoelectric Point (pI)

66.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031312)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004618.1_g000019 Rmu_sc0004966.1_g000008

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 514
AccB1I GGYRCC 1 cut(s) 302
AccBSI CCGCTC 2 cut(s) 733, 847
AccI GTMKAC 2 cut(s) 334, 366
AccII CGCG 1 cut(s) 872
AclWI GGATC 1 cut(s) 478
AcoI YGGCCR 3 cut(s) 187, 489, 779
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 641
AcvI CACGTG 2 cut(s) 193, 401
AcyI GRCGYC 1 cut(s) 443
AfaI GTAC 2 cut(s) 289, 482
AfeI AGCGCT 1 cut(s) 209
AfiI CCNNNNNNNGG 5 cut(s) 298, 299, 520, 788, 940
AflIII ACRYGT 1 cut(s) 398
AgeI ACCGGT 1 cut(s) 327
AgsI TTSAA 4 cut(s) 89, 559, 565, 896
AjiI CACGTC 1 cut(s) 370
AjnI CCWGG 2 cut(s) 200, 898
AjuI GAANNNNNNNTTGG 4 cut(s) 551, 557, 583, 589
AleI CACNNNNGTG 1 cut(s) 403
AloI GAACNNNNNNTCC 2 cut(s) 365, 397
AluBI AGCT 6 cut(s) 26, 161, 281, 377, 883, 925
AluI AGCT 6 cut(s) 26, 161, 281, 377, 883, 925
Alw21I GWGCWC 1 cut(s) 283
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 1 cut(s) 478
Aor51HI AGCGCT 1 cut(s) 209
AoxI GGCC 6 cut(s) 187, 456, 489, 779, 804, 876
ApaI GGGCCC 1 cut(s) 880
ApoI RAATTY 1 cut(s) 4
AsiGI ACCGGT 1 cut(s) 327
AspLEI GCGC 4 cut(s) 210, 244, 679, 817
AspS9I GGNCC 4 cut(s) 177, 804, 876, 877
AsuC2I CCSGG 1 cut(s) 833
AsuHPI GGTGA 1 cut(s) 434
AsuII TTCGAA 1 cut(s) 8
AvaII GGWCC 1 cut(s) 177
BaeGI GKGCMC 2 cut(s) 307, 880
BanI GGYRCC 1 cut(s) 302
BanII GRGCYC 5 cut(s) 283, 832, 855, 880, 891
BbrPI CACGTG 2 cut(s) 193, 401
BbsI GAAGAC 4 cut(s) 71, 255, 510, 532
Bbv12I GWGCWC 1 cut(s) 283
BccI CCATC 1 cut(s) 404
BciT130I CCWGG 2 cut(s) 202, 900
BcnI CCSGG 1 cut(s) 833
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 3 cut(s) 378, 785, 955
BfoI RGCGCY 3 cut(s) 211, 245, 818
BglII AGATCT 2 cut(s) 32, 500
BisI GCNGC 4 cut(s) 434, 477, 734, 782
BlsI GCNGC 4 cut(s) 435, 478, 735, 783
Bme1390I CCNGG 3 cut(s) 202, 833, 900
Bme18I GGWCC 1 cut(s) 177
BmgBI CACGTC 1 cut(s) 370
BmgT120I GGNCC 4 cut(s) 177, 804, 876, 877
BmiI GGNNCC 5 cut(s) 178, 304, 852, 878, 888
BmrFI CCNGG 3 cut(s) 202, 833, 900
BmrI ACTGGG 1 cut(s) 849
BmsI GCATC 1 cut(s) 179
BmuI ACTGGG 1 cut(s) 849
BpiI GAAGAC 4 cut(s) 71, 255, 510, 532
BpmI CTGGAG 3 cut(s) 184, 276, 905
Bpu14I TTCGAA 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 833
BsaAI YACGTR 2 cut(s) 193, 401
BsaHI GRCGYC 1 cut(s) 443
BsaJI CCNNGG 4 cut(s) 201, 486, 831, 899
BsaWI WCCGGW 1 cut(s) 327
BsaXI ACNNNNNCTCC 6 cut(s) 182, 212, 622, 652, 688, 718
Bsc4I CCNNNNNNNGG 5 cut(s) 298, 299, 520, 788, 940
Bse118I RCCGGY 1 cut(s) 327
Bse1I ACTGG 3 cut(s) 514, 775, 855
Bse3DI GCAATG 1 cut(s) 668
BseBI CCWGG 2 cut(s) 202, 900
BseDI CCNNGG 4 cut(s) 201, 486, 831, 899
BseLI CCNNNNNNNGG 5 cut(s) 298, 299, 520, 788, 940
BseMI GCAATG 1 cut(s) 668
BseMII CTCAG 2 cut(s) 27, 772
BseNI ACTGG 3 cut(s) 514, 775, 855
BseRI GAGGAG 7 cut(s) 59, 273, 643, 646, 754, 757, 760
BseSI GKGCMC 2 cut(s) 307, 880
BseYI CCCAGC 3 cut(s) 623, 879, 929
Bsh1236I CGCG 1 cut(s) 872
BshFI GGCC 6 cut(s) 189, 458, 491, 781, 806, 878
BshNI GGYRCC 1 cut(s) 302
BshTI ACCGGT 1 cut(s) 327
BsiHKAI GWGCWC 1 cut(s) 283
BsiSI CCGG 2 cut(s) 328, 833
BslFI GGGAC 1 cut(s) 562
BslI CCNNNNNNNGG 5 cut(s) 298, 299, 520, 788, 940
BsmAI GTCTC 1 cut(s) 389
BsmFI GGGAC 1 cut(s) 562
BsnI GGCC 6 cut(s) 189, 458, 491, 781, 806, 878
Bsp119I TTCGAA 1 cut(s) 8
Bsp120I GGGCCC 1 cut(s) 876
Bsp1286I GDGCHC 6 cut(s) 283, 307, 832, 855, 880, 891
Bsp143I GATC 4 cut(s) 32, 470, 500, 682
Bsp19I CCATGG 1 cut(s) 486
Bsp68I TCGCGA 1 cut(s) 872
BspANI GGCC 6 cut(s) 189, 458, 491, 781, 806, 878
BspCNI CTCAG 2 cut(s) 28, 771
BspFNI CGCG 1 cut(s) 872
BspLI GGNNCC 5 cut(s) 178, 304, 852, 878, 888
BspPI GGATC 1 cut(s) 478
BspT104I TTCGAA 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 302
BsrBI CCGCTC 2 cut(s) 733, 847
BsrDI GCAATG 1 cut(s) 668
BsrFI RCCGGY 1 cut(s) 327
BsrI ACTGG 3 cut(s) 514, 775, 855
BssAI RCCGGY 1 cut(s) 327
BssECI CCNNGG 4 cut(s) 201, 486, 831, 899
BssMI GATC 4 cut(s) 32, 470, 500, 682
BssNI GRCGYC 1 cut(s) 443
BssT1I CCWWGG 1 cut(s) 486
Bst2UI CCWGG 2 cut(s) 202, 900
Bst6I CTCTTC 1 cut(s) 660
BstACI GRCGYC 1 cut(s) 443
BstBAI YACGTR 2 cut(s) 193, 401
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 3 cut(s) 36, 758, 945
BstDSI CCRYGG 1 cut(s) 486
BstFNI CGCG 1 cut(s) 872
BstH2I RGCGCY 3 cut(s) 211, 245, 818
BstHHI GCGC 4 cut(s) 210, 244, 679, 817
BstKTI GATC 4 cut(s) 35, 473, 503, 685
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 4 cut(s) 32, 470, 500, 682
BstMWI GCNNNNNNNGC 7 cut(s) 167, 358, 442, 674, 803, 812, 821
BstNI CCWGG 2 cut(s) 202, 900
BstSCI CCNGG 3 cut(s) 200, 831, 898
BstSLI GKGCMC 2 cut(s) 307, 880
BstUI CGCG 1 cut(s) 872
BstV2I GAAGAC 4 cut(s) 71, 255, 510, 532
BstX2I RGATCY 2 cut(s) 32, 500
BstYI RGATCY 2 cut(s) 32, 500
BsuRI GGCC 6 cut(s) 189, 458, 491, 781, 806, 878
BtgI CCRYGG 1 cut(s) 486
BtgZI GCGATG 1 cut(s) 423
BtrI CACGTC 1 cut(s) 370
BtsI GCAGTG 1 cut(s) 124
BtsIMutI CAGTG 3 cut(s) 124, 766, 782
BtuMI TCGCGA 1 cut(s) 872
Cac8I GCNNGC 1 cut(s) 354
CfoI GCGC 4 cut(s) 210, 244, 679, 817
Cfr10I RCCGGY 1 cut(s) 327
Cfr13I GGNCC 4 cut(s) 177, 804, 876, 877
CseI GACGC 4 cut(s) 38, 260, 451, 457
Csp6I GTAC 2 cut(s) 288, 481
CspAI ACCGGT 1 cut(s) 327
CviAII CATG 2 cut(s) 439, 487
CviQI GTAC 2 cut(s) 288, 481
DdeI CTNAG 3 cut(s) 36, 758, 945
DpnI GATC 4 cut(s) 34, 472, 502, 684
DpnII GATC 4 cut(s) 32, 470, 500, 682
DrdI GACNNNNNNGTC 1 cut(s) 514
DseDI GACNNNNNNGTC 1 cut(s) 514
EaeI YGGCCR 3 cut(s) 187, 489, 779
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
EciI GGCGGA 2 cut(s) 658, 751
Ecl136II GAGCTC 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 486
Eco24I GRGCYC 5 cut(s) 283, 832, 855, 880, 891
Eco47I GGWCC 1 cut(s) 177
Eco47III AGCGCT 1 cut(s) 209
Eco53kI GAGCTC 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 641
Eco72I CACGTG 2 cut(s) 193, 401
EcoICRI GAGCTC 1 cut(s) 281
EcoO109I RGGNCCY 2 cut(s) 177, 876
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 200, 898
EcoT14I CCWWGG 1 cut(s) 486
EcoT38I GRGCYC 5 cut(s) 283, 832, 855, 880, 891
ErhI CCWWGG 1 cut(s) 486
FaeI CATG 2 cut(s) 442, 490
FaiI YATR 2 cut(s) 440, 488
FalI AAGNNNNNCTT 2 cut(s) 502, 534
FaqI GGGAC 1 cut(s) 562
FatI CATG 2 cut(s) 438, 486
FauI CCCGC 1 cut(s) 840
FblI GTMKAC 2 cut(s) 334, 366
Fnu4HI GCNGC 4 cut(s) 434, 477, 734, 782
FriOI GRGCYC 5 cut(s) 283, 832, 855, 880, 891
Fsp4HI GCNGC 4 cut(s) 434, 477, 734, 782
FspBI CTAG 3 cut(s) 378, 785, 955
GlaI GCGC 4 cut(s) 209, 243, 678, 816
GluI GCNGC 4 cut(s) 434, 477, 734, 782
GsaI CCCAGC 3 cut(s) 627, 883, 933
GsuI CTGGAG 3 cut(s) 184, 276, 905
HaeII RGCGCY 3 cut(s) 211, 245, 818
HaeIII GGCC 6 cut(s) 189, 458, 491, 781, 806, 878
HapII CCGG 2 cut(s) 328, 833
HgaI GACGC 4 cut(s) 38, 260, 451, 457
HhaI GCGC 4 cut(s) 210, 244, 679, 817
Hin1I GRCGYC 1 cut(s) 443
Hin1II CATG 2 cut(s) 442, 490
Hin6I GCGC 4 cut(s) 208, 242, 677, 815
HinP1I GCGC 4 cut(s) 208, 242, 677, 815
HincII GTYRAC 2 cut(s) 335, 367
HindII GTYRAC 2 cut(s) 335, 367
HindIII AAGCTT 2 cut(s) 24, 923
HinfI GANTC 6 cut(s) 67, 197, 386, 528, 646, 771
HpaII CCGG 2 cut(s) 328, 833
HphI GGTGA 1 cut(s) 434
Hpy166II GTNNAC 5 cut(s) 196, 288, 335, 367, 617
Hpy188I TCNGA 5 cut(s) 37, 54, 132, 500, 948
Hpy188III TCNNGA 3 cut(s) 30, 522, 871
Hpy8I GTNNAC 5 cut(s) 196, 288, 335, 367, 617
Hpy99I CGWCG 7 cut(s) 54, 188, 339, 368, 371, 451, 466
HpyAV CCTTC 3 cut(s) 546, 695, 782
HpyCH4IV ACGT 4 cut(s) 183, 192, 369, 400
HpyCH4V TGCA 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 7 cut(s) 167, 358, 442, 674, 803, 812, 821
HpyF3I CTNAG 3 cut(s) 36, 758, 945
HpySE526I ACGT 4 cut(s) 183, 192, 369, 400
Hsp92I GRCGYC 1 cut(s) 443
Hsp92II CATG 2 cut(s) 442, 490
HspAI GCGC 4 cut(s) 208, 242, 677, 815
Kzo9I GATC 4 cut(s) 32, 470, 500, 682
LmnI GCTCC 6 cut(s) 46, 54, 158, 205, 850, 886
LweI GCATC 1 cut(s) 179
MaeI CTAG 3 cut(s) 378, 785, 955
MaeII ACGT 4 cut(s) 183, 192, 369, 400
MalI GATC 4 cut(s) 34, 472, 502, 684
MbiI CCGCTC 2 cut(s) 733, 847
MboI GATC 4 cut(s) 32, 470, 500, 682
MflI RGATCY 2 cut(s) 32, 500
MhlI GDGCHC 6 cut(s) 283, 307, 832, 855, 880, 891
MluCI AATT 6 cut(s) 4, 89, 226, 554, 560, 566
MlyI GAGTC 5 cut(s) 61, 191, 395, 522, 780
MmeI TCCRAC 2 cut(s) 32, 372
MseI TTAA 2 cut(s) 225, 921
MslI CAYNNNNRTG 1 cut(s) 403
MspA1I CMGCKG 2 cut(s) 433, 883
MspI CCGG 2 cut(s) 328, 833
MspR9I CCNGG 3 cut(s) 202, 833, 900
MvaI CCWGG 2 cut(s) 202, 900
MvnI CGCG 1 cut(s) 872
MwoI GCNNNNNNNGC 7 cut(s) 167, 358, 442, 674, 803, 812, 821
NciI CCSGG 1 cut(s) 833
NcoI CCATGG 1 cut(s) 486
NdeII GATC 4 cut(s) 32, 470, 500, 682
NlaIII CATG 2 cut(s) 442, 490
NlaIV GGNNCC 5 cut(s) 178, 304, 852, 878, 888
NmeAIII GCCGAG 1 cut(s) 49
NruI TCGCGA 1 cut(s) 872
NspV TTCGAA 1 cut(s) 8
OliI CACNNNNGTG 1 cut(s) 403
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PfeI GAWTC 1 cut(s) 646
PflFI GACNNNGTC 1 cut(s) 531
PinAI ACCGGT 1 cut(s) 327
PkrI GCNGC 4 cut(s) 435, 478, 735, 783
PleI GAGTC 5 cut(s) 61, 191, 394, 522, 779
PmaCI CACGTG 2 cut(s) 193, 401
PmlI CACGTG 2 cut(s) 193, 401
PpsI GAGTC 5 cut(s) 61, 191, 394, 522, 779
Ppu21I YACGTR 2 cut(s) 193, 401
PpuMI RGGWCCY 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 283
Psp5II RGGWCCY 1 cut(s) 177
Psp6I CCWGG 2 cut(s) 200, 898
PspCI CACGTG 2 cut(s) 193, 401
PspFI CCCAGC 3 cut(s) 623, 879, 929
PspGI CCWGG 2 cut(s) 200, 898
PspN4I GGNNCC 5 cut(s) 178, 304, 852, 878, 888
PspOMI GGGCCC 1 cut(s) 876
PspPI GGNCC 4 cut(s) 177, 804, 876, 877
PspPPI RGGWCCY 1 cut(s) 177
PsuI RGATCY 2 cut(s) 32, 500
PsyI GACNNNGTC 1 cut(s) 531
PvuII CAGCTG 1 cut(s) 883
RruI TCGCGA 1 cut(s) 872
RsaI GTAC 2 cut(s) 289, 482
RsaNI GTAC 2 cut(s) 288, 481
RseI CAYNNNNRTG 1 cut(s) 403
SacI GAGCTC 1 cut(s) 283
SalI GTCGAC 2 cut(s) 333, 365
SaqAI TTAA 2 cut(s) 225, 921
SatI GCNGC 4 cut(s) 434, 477, 734, 782
Sau3AI GATC 4 cut(s) 32, 470, 500, 682
Sau96I GGNCC 4 cut(s) 177, 804, 876, 877
SchI GAGTC 5 cut(s) 61, 191, 395, 522, 780
ScrFI CCNGG 3 cut(s) 202, 833, 900
SduI GDGCHC 6 cut(s) 283, 307, 832, 855, 880, 891
SfaNI GCATC 1 cut(s) 179
SfuI TTCGAA 1 cut(s) 8
SgrDI CGTCGACG 1 cut(s) 365
SinI GGWCC 1 cut(s) 177
SmiMI CAYNNNNRTG 1 cut(s) 403
SmlI CTYRAG 1 cut(s) 938
SmoI CTYRAG 1 cut(s) 938
Sse9I AATT 6 cut(s) 4, 89, 226, 554, 560, 566
SspMI CTAG 3 cut(s) 378, 785, 955
SstI GAGCTC 1 cut(s) 283
StyD4I CCNGG 3 cut(s) 200, 831, 898
StyI CCWWGG 1 cut(s) 486
TaiI ACGT 4 cut(s) 186, 195, 372, 403
TaqI TCGA 8 cut(s) 8, 334, 366, 384, 461, 506, 729, 843
TasI AATT 6 cut(s) 4, 89, 226, 554, 560, 566
TauI GCSGC 4 cut(s) 436, 479, 736, 784
TfiI GAWTC 1 cut(s) 646
Tru1I TTAA 2 cut(s) 225, 921
Tru9I TTAA 2 cut(s) 225, 921
TscAI CASTG 3 cut(s) 124, 766, 782
TspDTI ATGAA 2 cut(s) 17, 528
TspRI CASTG 3 cut(s) 124, 766, 782
Tth111I GACNNNGTC 1 cut(s) 531
VpaK11BI GGWCC 1 cut(s) 177
XapI RAATTY 1 cut(s) 4
XmiI GTMKAC 2 cut(s) 334, 366
XspI CTAG 3 cut(s) 378, 785, 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.