Rmu_sc0004705.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004705.1
OG0031314
Physical Location & Seq
Reverse (-)
52636 .. 55418
2783 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 924 bp
atgggggatttgtacgctttggatttcgatggggttctgtgcgatagctgcggagagagctacgcctctgctgccaaggcattgtttgtgttttatactcttccaaatgatgtggatccaagcttggaggattggatggttgatcagatcggcatggtgagacctgtgctgcaatctcggtatgagaatctgatacttgtgaggctacttctggagatgagggttccttctaaaagggagtcatcagttgcgggagggctcacagtggaggggatagtggagaattggtcagagttgaagagtctggttctgaaggaatggggtgaggataaggatgctcttataaaggtgtttggagaggtcagggatgagtggaaggaccaggacctggaaacttggactgctgcaaatagattgtatccaggtgttgctgatgctcttacattggcagcctctaccatttacattgtcactgggaaacagagccgatttgccgaagtaatactggaaaaacttgcagaagttacactaccacctggaagaataattggagatggatctcggagcatcaaacccgggatggtggctctgcatgcttcgaatttcctggaggacttccctgagagtatggttggtgcgaacgaggagagagtgcatgtcatccatgtcggtggtgagacttgcaacctgccagtcagtgaccagaatgaggtcacgaagactctcaaaagaaacagcagaaggtgcattagaaggagatggacgaagaggaggacttctgctgcgttctcagtgcatgccaggatgaagaagaccggctcgggctgcggcctggcgcccctcctctggaggaggaaggcgccgatggcctccccggcgaggagtgatcgatgtatggagtcatggaccctttatcttttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

34.31

Weight (kDa)

6.47

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031314)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004705.1_g000012 Rmu_sc0005571.1_g000004

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 344
Acc36I ACCTGC 1 cut(s) 696
AccB1I GGYRCC 2 cut(s) 835, 859
AccB7I CCANNNNNTGG 1 cut(s) 388
AciI CCGC 3 cut(s) 51, 251, 828
AclWI GGATC 3 cut(s) 110, 123, 565
AcsI RAATTY 1 cut(s) 601
AcuI CTGAAG 1 cut(s) 332
AcyI GRCGYC 2 cut(s) 836, 860
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 4 cut(s) 388, 709, 846, 879
AgsI TTSAA 1 cut(s) 298
AjnI CCWGG 7 cut(s) 381, 387, 421, 535, 606, 800, 831
AluBI AGCT 3 cut(s) 48, 60, 123
AluI AGCT 3 cut(s) 48, 60, 123
Alw26I GTCTC 2 cut(s) 154, 671
AlwI GGATC 3 cut(s) 110, 123, 565
AlwNI CAGNNNCTG 1 cut(s) 388
Ama87I CYCGRG 2 cut(s) 575, 820
AoxI GGCC 2 cut(s) 829, 867
ApeKI GCWGC 7 cut(s) 48, 71, 169, 404, 449, 782, 825
ApoI RAATTY 1 cut(s) 601
AspLEI GCGC 2 cut(s) 838, 862
AspS9I GGNCC 3 cut(s) 379, 385, 906
AsuC2I CCSGG 3 cut(s) 576, 577, 875
AsuHPI GGTGA 3 cut(s) 169, 335, 686
AsuII TTCGAA 1 cut(s) 599
AvaI CYCGRG 2 cut(s) 575, 820
AvaII GGWCC 3 cut(s) 379, 385, 906
BamHI GGATCC 1 cut(s) 115
BanI GGYRCC 2 cut(s) 835, 859
BanII GRGCYC 1 cut(s) 261
BarI GAAGNNNNNNTAC 2 cut(s) 513, 545
BbsI GAAGAC 2 cut(s) 725, 818
BbvI GCAGC 7 cut(s) 35, 58, 156, 391, 461, 769, 812
BccI CCATC 6 cut(s) 23, 130, 548, 574, 753, 859
BciT130I CCWGG 7 cut(s) 383, 389, 423, 537, 608, 802, 833
BciVI GTATCC 1 cut(s) 429
BclI TGATCA 1 cut(s) 142
BcnI CCSGG 3 cut(s) 576, 577, 875
BcoDI GTCTC 2 cut(s) 154, 671
BfoI RGCGCY 2 cut(s) 839, 863
BfuAI ACCTGC 1 cut(s) 696
BfuI GTATCC 1 cut(s) 429
BglI GCCNNNNNGGC 1 cut(s) 875
BisI GCNGC 8 cut(s) 49, 72, 170, 405, 450, 783, 826, 829
BlsI GCNGC 8 cut(s) 50, 73, 171, 406, 451, 784, 827, 830
Bme18I GGWCC 3 cut(s) 379, 385, 906
BmeT110I CYCGRG 2 cut(s) 575, 820
BmgT120I GGNCC 3 cut(s) 379, 385, 906
BmiI GGNNCC 5 cut(s) 117, 225, 837, 861, 908
BmrI ACTGGG 1 cut(s) 483
BmsI GCATC 3 cut(s) 325, 424, 576
BmuI ACTGGG 1 cut(s) 483
BpiI GAAGAC 2 cut(s) 725, 818
BpmI CTGGAG 3 cut(s) 233, 629, 868
Bpu14I TTCGAA 1 cut(s) 599
BpuMI CCSGG 3 cut(s) 576, 577, 875
Bsa29I ATCGAT 1 cut(s) 889
BsaBI GATNNNNATC 1 cut(s) 114
BsaHI GRCGYC 2 cut(s) 836, 860
BsaI GGTCTC 1 cut(s) 154
BsaJI CCNNGG 3 cut(s) 75, 575, 873
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 4 cut(s) 388, 709, 846, 879
Bse118I RCCGGY 1 cut(s) 815
Bse1I ACTGG 3 cut(s) 478, 510, 692
Bse8I GATNNNNATC 1 cut(s) 114
BseBI CCWGG 7 cut(s) 383, 389, 423, 537, 608, 802, 833
BseCI ATCGAT 1 cut(s) 889
BseDI CCNNGG 3 cut(s) 75, 575, 873
BseGI GGATG 6 cut(s) 141, 340, 373, 585, 660, 810
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 4 cut(s) 388, 709, 846, 879
BseMII CTCAG 2 cut(s) 612, 804
BseNI ACTGG 3 cut(s) 478, 510, 692
BseRI GAGGAG 5 cut(s) 659, 784, 833, 865, 895
BseXI GCAGC 7 cut(s) 35, 58, 156, 391, 461, 769, 812
BshFI GGCC 2 cut(s) 831, 869
BshNI GGYRCC 2 cut(s) 835, 859
BshVI ATCGAT 1 cut(s) 889
BsiHKCI CYCGRG 2 cut(s) 575, 820
BsiSI CCGG 3 cut(s) 576, 816, 875
BslI CCNNNNNNNGG 4 cut(s) 388, 709, 846, 879
BsmAI GTCTC 2 cut(s) 154, 671
BsnI GGCC 2 cut(s) 831, 869
Bso31I GGTCTC 1 cut(s) 154
BsoBI CYCGRG 2 cut(s) 575, 820
Bsp119I TTCGAA 1 cut(s) 599
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 5 cut(s) 115, 142, 147, 557, 886
BspACI CCGC 3 cut(s) 51, 251, 828
BspANI GGCC 2 cut(s) 831, 869
BspCNI CTCAG 2 cut(s) 613, 803
BspDI ATCGAT 1 cut(s) 889
BspLI GGNNCC 5 cut(s) 117, 225, 837, 861, 908
BspMI ACCTGC 1 cut(s) 696
BspPI GGATC 3 cut(s) 110, 123, 565
BspT104I TTCGAA 1 cut(s) 599
BspT107I GGYRCC 2 cut(s) 835, 859
BspTNI GGTCTC 1 cut(s) 154
BsrFI RCCGGY 1 cut(s) 815
BsrI ACTGG 3 cut(s) 478, 510, 692
BssAI RCCGGY 1 cut(s) 815
BssECI CCNNGG 3 cut(s) 75, 575, 873
BssMI GATC 5 cut(s) 115, 142, 147, 557, 886
BssNI GRCGYC 2 cut(s) 836, 860
BssT1I CCWWGG 1 cut(s) 75
Bst2UI CCWGG 7 cut(s) 383, 389, 423, 537, 608, 802, 833
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 3 cut(s) 105, 293, 761
BstACI GRCGYC 2 cut(s) 836, 860
BstAPI GCANNNNNTGC 1 cut(s) 744
BstBI TTCGAA 1 cut(s) 599
BstC8I GCNNGC 2 cut(s) 594, 798
BstDEI CTNAG 2 cut(s) 621, 790
BstF5I GGATG 6 cut(s) 141, 340, 373, 585, 660, 810
BstH2I RGCGCY 2 cut(s) 839, 863
BstHHI GCGC 2 cut(s) 838, 862
BstKTI GATC 5 cut(s) 118, 145, 150, 560, 889
BstMAI GTCTC 2 cut(s) 154, 671
BstMBI GATC 5 cut(s) 115, 142, 147, 557, 886
BstMWI GCNNNNNNNGC 9 cut(s) 48, 57, 71, 77, 593, 744, 825, 866, 875
BstNI CCWGG 7 cut(s) 383, 389, 423, 537, 608, 802, 833
BstNSI RCATGY 3 cut(s) 596, 659, 800
BstV1I GCAGC 7 cut(s) 35, 58, 156, 391, 461, 769, 812
BstV2I GAAGAC 2 cut(s) 725, 818
BstX2I RGATCY 2 cut(s) 115, 557
BstXI CCANNNNNNTGG 1 cut(s) 671
BstYI RGATCY 2 cut(s) 115, 557
Bsu15I ATCGAT 1 cut(s) 889
BsuI GTATCC 1 cut(s) 429
BsuRI GGCC 2 cut(s) 831, 869
BsuTUI ATCGAT 1 cut(s) 889
BtsCI GGATG 6 cut(s) 141, 340, 373, 585, 660, 810
BtsIMutI CAGTG 4 cut(s) 270, 471, 703, 798
BveI ACCTGC 1 cut(s) 696
Cac8I GCNNGC 2 cut(s) 594, 798
CaiI CAGNNNCTG 1 cut(s) 388
CfoI GCGC 2 cut(s) 838, 862
Cfr10I RCCGGY 1 cut(s) 815
Cfr13I GGNCC 3 cut(s) 379, 385, 906
Cfr9I CCCGGG 1 cut(s) 575
ClaI ATCGAT 1 cut(s) 889
Csp6I GTAC 1 cut(s) 13
CspCI CAANNNNNGTGG 2 cut(s) 93, 128
CviAII CATG 6 cut(s) 154, 593, 656, 665, 797, 903
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 2 cut(s) 621, 790
DinI GGCGCC 2 cut(s) 837, 861
DpnI GATC 5 cut(s) 117, 144, 149, 559, 888
DpnII GATC 5 cut(s) 115, 142, 147, 557, 886
Eam1104I CTCTTC 3 cut(s) 105, 293, 761
EarI CTCTTC 3 cut(s) 105, 293, 761
Eco130I CCWWGG 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 261
Eco31I GGTCTC 1 cut(s) 154
Eco47I GGWCC 3 cut(s) 379, 385, 906
Eco57I CTGAAG 1 cut(s) 332
Eco88I CYCGRG 2 cut(s) 575, 820
EcoO109I RGGNCCY 1 cut(s) 385
EcoRII CCWGG 7 cut(s) 381, 387, 421, 535, 606, 800, 831
EcoT14I CCWWGG 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 261
EgeI GGCGCC 2 cut(s) 837, 861
EheI GGCGCC 2 cut(s) 837, 861
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 6 cut(s) 157, 596, 659, 668, 800, 906
FatI CATG 6 cut(s) 153, 592, 655, 664, 796, 902
FauI CCCGC 1 cut(s) 244
FbaI TGATCA 1 cut(s) 142
Fnu4HI GCNGC 8 cut(s) 49, 72, 170, 405, 450, 783, 826, 829
FokI GGATG 6 cut(s) 148, 347, 380, 592, 647, 817
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 8 cut(s) 49, 72, 170, 405, 450, 783, 826, 829
GlaI GCGC 2 cut(s) 837, 861
GluI GCNGC 8 cut(s) 49, 72, 170, 405, 450, 783, 826, 829
GsuI CTGGAG 3 cut(s) 233, 629, 868
HaeII RGCGCY 2 cut(s) 839, 863
HaeIII GGCC 2 cut(s) 831, 869
HapII CCGG 3 cut(s) 576, 816, 875
HhaI GCGC 2 cut(s) 838, 862
Hin1I GRCGYC 2 cut(s) 836, 860
Hin1II CATG 6 cut(s) 157, 596, 659, 668, 800, 906
Hin6I GCGC 2 cut(s) 836, 860
HinP1I GCGC 2 cut(s) 836, 860
HindIII AAGCTT 1 cut(s) 121
HinfI GANTC 5 cut(s) 187, 239, 301, 721, 899
HpaII CCGG 3 cut(s) 576, 816, 875
HphI GGTGA 3 cut(s) 169, 335, 686
Hpy188I TCNGA 5 cut(s) 147, 192, 292, 312, 564
Hpy188III TCNNGA 3 cut(s) 212, 715, 847
HpyAV CCTTC 6 cut(s) 237, 307, 370, 735, 747, 850
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 8 cut(s) 172, 407, 518, 592, 655, 684, 747, 796
HpyF10VI GCNNNNNNNGC 9 cut(s) 48, 57, 71, 77, 593, 744, 825, 866, 875
HpyF3I CTNAG 2 cut(s) 621, 790
Hsp92I GRCGYC 2 cut(s) 836, 860
Hsp92II CATG 6 cut(s) 157, 596, 659, 668, 800, 906
HspAI GCGC 2 cut(s) 836, 860
KasI GGCGCC 2 cut(s) 835, 859
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 5 cut(s) 115, 142, 147, 557, 886
LmnI GCTCC 1 cut(s) 564
Lsp1109I GCAGC 7 cut(s) 35, 58, 156, 391, 461, 769, 812
LweI GCATC 3 cut(s) 325, 424, 576
MaeIII GTNAC 4 cut(s) 469, 523, 698, 712
MalI GATC 5 cut(s) 117, 144, 149, 559, 888
MboI GATC 5 cut(s) 115, 142, 147, 557, 886
MboII GAAGA 7 cut(s) 92, 310, 552, 730, 778, 820, 823
MflI RGATCY 2 cut(s) 115, 557
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 3 cut(s) 283, 546, 601
Mly113I GGCGCC 2 cut(s) 836, 860
MlyI GAGTC 4 cut(s) 248, 310, 715, 908
MslI CAYNNNNRTG 1 cut(s) 669
MspI CCGG 3 cut(s) 576, 816, 875
MvaI CCWGG 7 cut(s) 383, 389, 423, 537, 608, 802, 833
MwoI GCNNNNNNNGC 9 cut(s) 48, 57, 71, 77, 593, 744, 825, 866, 875
NarI GGCGCC 2 cut(s) 836, 860
NciI CCSGG 3 cut(s) 576, 577, 875
NdeII GATC 5 cut(s) 115, 142, 147, 557, 886
NlaIII CATG 6 cut(s) 157, 596, 659, 668, 800, 906
NlaIV GGNNCC 5 cut(s) 117, 225, 837, 861, 908
NmuCI GTSAC 3 cut(s) 469, 698, 712
NspI RCATGY 3 cut(s) 596, 659, 800
NspV TTCGAA 1 cut(s) 599
PaeI GCATGC 2 cut(s) 596, 800
PfeI GAWTC 1 cut(s) 187
PflMI CCANNNNNTGG 1 cut(s) 388
PfoI TCCNGGA 1 cut(s) 606
PkrI GCNGC 8 cut(s) 50, 73, 171, 406, 451, 784, 827, 830
PleI GAGTC 4 cut(s) 247, 309, 715, 907
PluTI GGCGCC 2 cut(s) 839, 863
PpsI GAGTC 4 cut(s) 247, 309, 715, 907
PpuMI RGGWCCY 1 cut(s) 385
PsiI TTATAA 1 cut(s) 344
Psp5II RGGWCCY 1 cut(s) 385
Psp6I CCWGG 7 cut(s) 381, 387, 421, 535, 606, 800, 831
PspGI CCWGG 7 cut(s) 381, 387, 421, 535, 606, 800, 831
PspN4I GGNNCC 5 cut(s) 117, 225, 837, 861, 908
PspPI GGNCC 3 cut(s) 379, 385, 906
PspPPI RGGWCCY 1 cut(s) 385
PstNI CAGNNNCTG 1 cut(s) 388
PsuI RGATCY 2 cut(s) 115, 557
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
RseI CAYNNNNRTG 1 cut(s) 669
SatI GCNGC 8 cut(s) 49, 72, 170, 405, 450, 783, 826, 829
Sau3AI GATC 5 cut(s) 115, 142, 147, 557, 886
Sau96I GGNCC 3 cut(s) 379, 385, 906
SchI GAGTC 4 cut(s) 248, 310, 715, 908
SduI GDGCHC 1 cut(s) 261
SfaNI GCATC 3 cut(s) 325, 424, 576
SfoI GGCGCC 2 cut(s) 837, 861
SfuI TTCGAA 1 cut(s) 599
SinI GGWCC 3 cut(s) 379, 385, 906
SmaI CCCGGG 1 cut(s) 577
SmiMI CAYNNNNRTG 1 cut(s) 669
SphI GCATGC 2 cut(s) 596, 800
Sse9I AATT 3 cut(s) 283, 546, 601
SsiI CCGC 3 cut(s) 51, 251, 828
SspDI GGCGCC 2 cut(s) 835, 859
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 3 cut(s) 27, 599, 889
TasI AATT 3 cut(s) 283, 546, 601
TauI GCSGC 1 cut(s) 831
TfiI GAWTC 1 cut(s) 187
TscAI CASTG 4 cut(s) 270, 478, 703, 798
TseFI GTSAC 3 cut(s) 469, 698, 712
TseI GCWGC 7 cut(s) 48, 71, 169, 404, 449, 782, 825
Tsp45I GTSAC 3 cut(s) 469, 698, 712
TspDTI ATGAA 1 cut(s) 821
TspMI CCCGGG 1 cut(s) 575
TspRI CASTG 4 cut(s) 270, 478, 703, 798
Van91I CCANNNNNTGG 1 cut(s) 388
VpaK11BI GGWCC 3 cut(s) 379, 385, 906
XapI RAATTY 1 cut(s) 601
XceI RCATGY 3 cut(s) 596, 659, 800
XmaI CCCGGG 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.