Rmu_sc0005571.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005571.1
OG0031314
Physical Location & Seq
Forward (+)
8039 .. 8302
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005571.1_g000004.1.cds

Sequence Viewer

Length: 264 bp
atgcaatcctccaatcagccaccaggatggtgtcgtggaggctatctagagagacaggaggaggaggaacagcagaaggtgcaccagaaggagggggcgaagaggagggctccggctgcgttcacggtgcatgccaggatgaaggatgctggctctggcagctgcctgatggccctcctctggaggaggaagacgccgatgtccaccaagtcgagtagtgatctttgtgctaaccatgatgagagaacctgcacactgagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.85

Weight (kDa)

9.34

Isoelectric Point (pI)

84.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031314)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004705.1_g000012 Rmu_sc0005571.1_g000004

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 199
Acc36I ACCTGC 1 cut(s) 257
AcyI GRCGYC 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 91, 180
AjnI CCWGG 2 cut(s) 22, 134
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 1 cut(s) 46
Alw44I GTGCAC 1 cut(s) 80
AoxI GGCC 1 cut(s) 171
ApaLI GTGCAC 1 cut(s) 80
ApeKI GCWGC 3 cut(s) 116, 159, 162
AspS9I GGNCC 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 84
BanII GRGCYC 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 3 cut(s) 103, 149, 171
BccI CCATC 2 cut(s) 21, 163
BciT130I CCWGG 2 cut(s) 24, 136
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 1 cut(s) 47
BfuAI ACCTGC 1 cut(s) 257
BisI GCNGC 3 cut(s) 117, 160, 163
BlsI GCNGC 3 cut(s) 118, 161, 164
Bme1390I CCNGG 2 cut(s) 24, 136
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 111
BmrFI CCNGG 2 cut(s) 24, 136
BmsI GCATC 1 cut(s) 136
BpiI GAAGAC 1 cut(s) 197
BplI GAGNNNNNCTC 2 cut(s) 94, 126
BpmI CTGGAG 1 cut(s) 202
BsaHI GRCGYC 1 cut(s) 194
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 180
BseBI CCWGG 2 cut(s) 24, 136
BseGI GGATG 3 cut(s) 32, 144, 151
BseLI CCNNNNNNNGG 2 cut(s) 91, 180
BseMII CTCAG 1 cut(s) 248
BseRI GAGGAG 5 cut(s) 74, 77, 118, 167, 199
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 3 cut(s) 103, 149, 171
BsgI GTGCAG 1 cut(s) 235
BshFI GGCC 1 cut(s) 173
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 91, 180
BsmAI GTCTC 1 cut(s) 46
BsnI GGCC 1 cut(s) 173
Bsp1286I GDGCHC 2 cut(s) 84, 112
Bsp143I GATC 1 cut(s) 220
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 1 cut(s) 249
BspLI GGNNCC 1 cut(s) 111
BspMI ACCTGC 1 cut(s) 257
BssMI GATC 1 cut(s) 220
BssNI GRCGYC 1 cut(s) 194
Bst2UI CCWGG 2 cut(s) 24, 136
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 194
BstAPI GCANNNNNTGC 1 cut(s) 79
BstC8I GCNNGC 2 cut(s) 132, 151
BstDEI CTNAG 1 cut(s) 257
BstF5I GGATG 3 cut(s) 32, 144, 151
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 3 cut(s) 79, 116, 159
BstNI CCWGG 2 cut(s) 24, 136
BstNSI RCATGY 1 cut(s) 134
BstSCI CCNGG 2 cut(s) 22, 134
BstSLI GKGCMC 1 cut(s) 84
BstV1I GCAGC 3 cut(s) 103, 149, 171
BstV2I GAAGAC 1 cut(s) 197
BstXI CCANNNNNNTGG 1 cut(s) 27
BsuRI GGCC 1 cut(s) 173
BtsCI GGATG 3 cut(s) 32, 144, 151
BtsIMutI CAGTG 1 cut(s) 254
BveI ACCTGC 1 cut(s) 257
Cac8I GCNNGC 2 cut(s) 132, 151
Cfr13I GGNCC 1 cut(s) 172
CseI GACGC 1 cut(s) 202
CviAII CATG 2 cut(s) 131, 236
CviJI RGCY 7 cut(s) 19, 42, 110, 116, 153, 162, 173
CviKI_1 RGCY 7 cut(s) 19, 42, 110, 116, 153, 162, 173
DdeI CTNAG 1 cut(s) 257
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
DrdI GACNNNNNNGTC 1 cut(s) 199
DseDI GACNNNNNNGTC 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 112
EcoRII CCWGG 2 cut(s) 22, 134
EcoT38I GRGCYC 1 cut(s) 112
FaeI CATG 2 cut(s) 134, 239
FaiI YATR 2 cut(s) 132, 237
FatI CATG 2 cut(s) 130, 235
Fnu4HI GCNGC 3 cut(s) 117, 160, 163
FokI GGATG 3 cut(s) 39, 151, 158
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 3 cut(s) 117, 160, 163
FspBI CTAG 1 cut(s) 47
GluI GCNGC 3 cut(s) 117, 160, 163
GsuI CTGGAG 1 cut(s) 202
HaeIII GGCC 1 cut(s) 173
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 202
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 2 cut(s) 134, 239
HpaII CCGG 1 cut(s) 113
Hpy166II GTNNAC 3 cut(s) 82, 123, 204
Hpy188III TCNNGA 2 cut(s) 47, 181
Hpy8I GTNNAC 3 cut(s) 82, 123, 204
HpyAV CCTTC 3 cut(s) 70, 82, 136
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 4 cut(s) 4, 82, 130, 252
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 116, 159
HpyF3I CTNAG 1 cut(s) 257
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 2 cut(s) 134, 239
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 115
Lsp1109I GCAGC 3 cut(s) 103, 149, 171
LweI GCATC 1 cut(s) 136
MaeI CTAG 1 cut(s) 47
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 2 cut(s) 112, 202
MhlI GDGCHC 2 cut(s) 84, 112
MslI CAYNNNNRTG 1 cut(s) 25
MspA1I CMGCKG 1 cut(s) 162
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 2 cut(s) 24, 136
MvaI CCWGG 2 cut(s) 24, 136
MwoI GCNNNNNNNGC 3 cut(s) 79, 116, 159
NdeII GATC 1 cut(s) 220
NlaIII CATG 2 cut(s) 134, 239
NlaIV GGNNCC 1 cut(s) 111
NspI RCATGY 1 cut(s) 134
PaeI GCATGC 1 cut(s) 134
PkrI GCNGC 3 cut(s) 118, 161, 164
Psp6I CCWGG 2 cut(s) 22, 134
PspGI CCWGG 2 cut(s) 22, 134
PspN4I GGNNCC 1 cut(s) 111
PspPI GGNCC 1 cut(s) 172
PvuII CAGCTG 1 cut(s) 162
RseI CAYNNNNRTG 1 cut(s) 25
SatI GCNGC 3 cut(s) 117, 160, 163
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 1 cut(s) 172
ScrFI CCNGG 2 cut(s) 24, 136
SduI GDGCHC 2 cut(s) 84, 112
SetI ASST 3 cut(s) 81, 164, 251
SfaNI GCATC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 25
SphI GCATGC 1 cut(s) 134
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 2 cut(s) 22, 134
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 212
TscAI CASTG 1 cut(s) 261
TseI GCWGC 3 cut(s) 116, 159, 162
TspDTI ATGAA 1 cut(s) 155
TspRI CASTG 1 cut(s) 261
VneI GTGCAC 1 cut(s) 80
XbaI TCTAGA 1 cut(s) 46
XceI RCATGY 1 cut(s) 134
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.