Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004838.1

Orthogroup ID

OG0031321

Physical Location & Seq

Genomic Coordinates Forward (+)

5375 .. 9686

Gene Structure 4312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atggctgtagtgggctgcattaaccggtctctttactctttcccggaggagaaaagcttgactgcaattccatgtagtggtcattgtcattatgaggcgttgccttactacttggcgattctggcaaccatttcaatacaaggtgagattacacaattagaggttactcgcagcaccacccgcccagcgaccacacgaacgatcttcatcaatggaagagcctccggtatgctcgctacctgcgtcatccaacccatcgatatcatcaaggtgagtattgaaattcatcaagatttttggtttatggtcaaagtcgtagttaatctgttctttttctggtttctggtttccctaagtttcgtcgtcatcgcctccaagagcatcttgaaggagcttaaggatttgcagaaggatcctctcacttccttcagcataggttctgtggctaaggacatgtttcattggcaagcaacgattatgggatcccctaatagcccatatgctggaggtgtgttccttgtcaccattcatttccctcctgactatcctttcaaaccacctaagaaagatgacggtgtttcaattttcaggttgcatttaggactaaggtcttccgtcttccatccatataccaacagcaatggaagcatttgtcttgatatcctcaaagagcaatggaatctagcccttattatctctaaggttcggctttgttatcttgcaggaacaataattggacccttaggaggaggttggaaggtgaaagatgagggagagggatcaagaggttgcggtggagaaaggggatgtcgtggtggtggtggtggctttggcaaagatagagttgatgcactcatgcgagaaaacttgcgaggagctaaggagtttgggataactgaagatgatttgaagtcacttcaaagtgttggtcagatgaaccttgagctcttccttagagtgggcatcaaaccacccaaggcatgttttatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

330

Amino Acids

36.35

Weight (kDa)

8.79

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	128 - 235	2.8e-24	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031321)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004838.1_g000004 Rmu_sc0006827.1_g000035

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	248
AccB7I	CCANNNNNTGG	2 cut(s)	77, 503
AciI	CCGC	2 cut(s)	181, 792
AclWI	GGATC	5 cut(s)	407, 420, 477, 490, 787
AcsI	RAATTY	1 cut(s)	282
AcuI	CTGAAG	2 cut(s)	412, 918
AfiI	CCNNNNNNNGG	4 cut(s)	77, 503, 746, 958
AflII	CTTAAG	1 cut(s)	395
AflIII	ACRYGT	1 cut(s)	453
AgeI	ACCGGT	1 cut(s)	24
AgsI	TTSAA	7 cut(s)	135, 281, 388, 553, 582, 910, 920
AluBI	AGCT	4 cut(s)	57, 394, 878, 946
AluI	AGCT	4 cut(s)	57, 394, 878, 946
Alw21I	GWGCWC	1 cut(s)	948
Alw26I	GTCTC	1 cut(s)	33
AlwI	GGATC	5 cut(s)	407, 420, 477, 490, 787
ApeKI	GCWGC	2 cut(s)	15, 171
ApoI	RAATTY	1 cut(s)	282
ArsI	GACNNNNNNTTYG	2 cut(s)	913, 945
AsiGI	ACCGGT	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	737
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	4 cut(s)	155, 283, 514, 772
AvaII	GGWCC	1 cut(s)	737
AxyI	CCTNAGG	1 cut(s)	742
BamHI	GGATCC	2 cut(s)	412, 482
BanII	GRGCYC	1 cut(s)	948
BbsI	GAAGAC	2 cut(s)	603, 610
Bbv12I	GWGCWC	1 cut(s)	948
BbvI	GCAGC	2 cut(s)	2, 183
BccI	CCATC	2 cut(s)	263, 630
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	1 cut(s)	683
BfmI	CTRYAG	1 cut(s)	6
BfrI	CTTAAG	1 cut(s)	395
BfuAI	ACCTGC	1 cut(s)	248
BisI	GCNGC	2 cut(s)	16, 172
BlsI	GCNGC	2 cut(s)	17, 173
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	1 cut(s)	737
BmgT120I	GGNCC	1 cut(s)	737
BmiI	GGNNCC	3 cut(s)	414, 484, 739
BmrFI	CCNGG	1 cut(s)	44
BmsI	GCATC	3 cut(s)	390, 838, 972
BoxI	GACNNNNGTC	1 cut(s)	607
BpiI	GAAGAC	2 cut(s)	603, 610
BpmI	CTGGAG	1 cut(s)	525
Bpu10I	CCTNAGC	2 cut(s)	447, 879
BpuEI	CTTGAG	1 cut(s)	962
BpuMI	CCSGG	1 cut(s)	44
Bsa29I	ATCGAT	1 cut(s)	258
BsaBI	GATNNNNATC	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	975
BsaWI	WCCGGW	2 cut(s)	24, 224
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 503, 746, 958
Bse118I	RCCGGY	1 cut(s)	24
Bse21I	CCTNAGG	1 cut(s)	742
Bse3DI	GCAATG	2 cut(s)	646, 680
Bse8I	GATNNNNATC	1 cut(s)	206
BseCI	ATCGAT	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	975
BseGI	GGATG	3 cut(s)	246, 622, 812
BseJI	GATNNNNATC	1 cut(s)	206
BseLI	CCNNNNNNNGG	4 cut(s)	77, 503, 746, 958
BseMI	GCAATG	2 cut(s)	646, 680
BseRI	GAGGAG	3 cut(s)	62, 762, 888
BseXI	GCAGC	2 cut(s)	2, 183
BseYI	CCCAGC	1 cut(s)	184
BshTI	ACCGGT	1 cut(s)	24
BshVI	ATCGAT	1 cut(s)	258
BsiHKAI	GWGCWC	1 cut(s)	948
BsiSI	CCGG	3 cut(s)	25, 44, 225
BslI	CCNNNNNNNGG	4 cut(s)	77, 503, 746, 958
BsmAI	GTCTC	1 cut(s)	33
Bso31I	GGTCTC	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	948
Bsp143I	GATC	4 cut(s)	201, 412, 482, 779
BspACI	CCGC	2 cut(s)	181, 792
BspDI	ATCGAT	1 cut(s)	258
BspLI	GGNNCC	3 cut(s)	414, 484, 739
BspMI	ACCTGC	1 cut(s)	248
BspPI	GGATC	5 cut(s)	407, 420, 477, 490, 787
BspQI	GCTCTTC	2 cut(s)	211, 953
BspTI	CTTAAG	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	33
BsrDI	GCAATG	2 cut(s)	646, 680
BsrFI	RCCGGY	1 cut(s)	24
BssAI	RCCGGY	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	975
BssMI	GATC	4 cut(s)	201, 412, 482, 779
BssT1I	CCWWGG	1 cut(s)	975
Bst4CI	ACNGT	1 cut(s)	575
Bst6I	CTCTTC	2 cut(s)	211, 953
BstAFI	CTTAAG	1 cut(s)	395
BstC8I	GCNNGC	2 cut(s)	234, 468
BstDEI	CTNAG	8 cut(s)	353, 447, 561, 605, 699, 742, 879, 953
BstF5I	GGATG	3 cut(s)	246, 622, 812
BstKTI	GATC	4 cut(s)	204, 415, 485, 782
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	4 cut(s)	201, 412, 482, 779
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 180, 645
BstNSI	RCATGY	2 cut(s)	457, 984
BstPAI	GACNNNNGTC	1 cut(s)	607
BstSCI	CCNGG	1 cut(s)	42
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	2 cut(s)	2, 183
BstV2I	GAAGAC	2 cut(s)	603, 610
BstX2I	RGATCY	2 cut(s)	412, 482
BstYI	RGATCY	2 cut(s)	412, 482
Bsu15I	ATCGAT	1 cut(s)	258
Bsu36I	CCTNAGG	1 cut(s)	742
BsuTUI	ATCGAT	1 cut(s)	258
BtgZI	GCGATG	1 cut(s)	352
BtsCI	GGATG	3 cut(s)	246, 622, 812
BveI	ACCTGC	1 cut(s)	248
Cac8I	GCNNGC	2 cut(s)	234, 468
Cfr10I	RCCGGY	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	737
ClaI	ATCGAT	1 cut(s)	258
CseI	GACGC	1 cut(s)	232
CspAI	ACCGGT	1 cut(s)	24
CviAII	CATG	4 cut(s)	72, 454, 856, 981
DdeI	CTNAG	8 cut(s)	353, 447, 561, 605, 699, 742, 879, 953
DpnI	GATC	4 cut(s)	203, 414, 484, 781
DpnII	GATC	4 cut(s)	201, 412, 482, 779
Eam1104I	CTCTTC	2 cut(s)	211, 953
EarI	CTCTTC	2 cut(s)	211, 953
Ecl136II	GAGCTC	1 cut(s)	946
Eco130I	CCWWGG	1 cut(s)	975
Eco24I	GRGCYC	1 cut(s)	948
Eco31I	GGTCTC	1 cut(s)	33
Eco32I	GATATC	2 cut(s)	262, 661
Eco47I	GGWCC	1 cut(s)	737
Eco53kI	GAGCTC	1 cut(s)	946
Eco57I	CTGAAG	2 cut(s)	412, 918
Eco81I	CCTNAGG	1 cut(s)	742
EcoICRI	GAGCTC	1 cut(s)	946
EcoRV	GATATC	2 cut(s)	262, 661
EcoT14I	CCWWGG	1 cut(s)	975
EcoT38I	GRGCYC	1 cut(s)	948
ErhI	CCWWGG	1 cut(s)	975
FaeI	CATG	4 cut(s)	75, 457, 859, 984
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FatI	CATG	4 cut(s)	71, 453, 855, 980
FauI	CCCGC	1 cut(s)	188
FauNDI	CATATG	1 cut(s)	499
Fnu4HI	GCNGC	2 cut(s)	16, 172
FokI	GGATG	3 cut(s)	233, 609, 819
FriOI	GRGCYC	1 cut(s)	948
Fsp4HI	GCNGC	2 cut(s)	16, 172
FspBI	CTAG	1 cut(s)	683
GluI	GCNGC	2 cut(s)	16, 172
GsaI	CCCAGC	1 cut(s)	188
GsuI	CTGGAG	1 cut(s)	525
HapII	CCGG	3 cut(s)	25, 44, 225
HgaI	GACGC	1 cut(s)	232
Hin1II	CATG	4 cut(s)	75, 457, 859, 984
HindIII	AAGCTT	1 cut(s)	55
HinfI	GANTC	2 cut(s)	118, 679
HpaII	CCGG	3 cut(s)	25, 44, 225
HphI	GGTGA	4 cut(s)	155, 283, 514, 772
Hpy188I	TCNGA	1 cut(s)	933
Hpy188III	TCNNGA	5 cut(s)	290, 385, 539, 656, 783
Hpy99I	CGWCG	1 cut(s)	365
HpyAV	CCTTC	4 cut(s)	382, 403, 436, 751
HpyCH4III	ACNGT	1 cut(s)	575
HpyCH4V	TGCA	6 cut(s)	18, 65, 406, 595, 722, 851
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 180, 645
HpyF3I	CTNAG	8 cut(s)	353, 447, 561, 605, 699, 742, 879, 953
Hsp92II	CATG	4 cut(s)	75, 457, 859, 984
Kzo9I	GATC	4 cut(s)	201, 412, 482, 779
LguI	GCTCTTC	2 cut(s)	211, 953
LmnI	GCTCC	2 cut(s)	391, 875
Lsp1109I	GCAGC	2 cut(s)	2, 183
LweI	GCATC	3 cut(s)	390, 838, 972
MaeI	CTAG	1 cut(s)	683
MaeIII	GTNAC	3 cut(s)	163, 520, 912
MalI	GATC	4 cut(s)	203, 414, 484, 781
MboI	GATC	4 cut(s)	201, 412, 482, 779
MboII	GAAGA	6 cut(s)	196, 228, 603, 610, 911, 940
MflI	RGATCY	2 cut(s)	412, 482
MhlI	GDGCHC	1 cut(s)	948
MluCI	AATT	5 cut(s)	66, 155, 282, 582, 732
MmeI	TCCRAC	2 cut(s)	274, 734
MseI	TTAA	3 cut(s)	21, 321, 396
MslI	CAYNNNNRTG	1 cut(s)	269
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	3 cut(s)	25, 44, 225
MspR9I	CCNGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	3 cut(s)	122, 180, 645
NciI	CCSGG	1 cut(s)	44
NdeI	CATATG	1 cut(s)	499
NdeII	GATC	4 cut(s)	201, 412, 482, 779
NlaIII	CATG	4 cut(s)	75, 457, 859, 984
NlaIV	GGNNCC	3 cut(s)	414, 484, 739
NmuCI	GTSAC	2 cut(s)	520, 912
NspI	RCATGY	2 cut(s)	457, 984
PciI	ACATGT	1 cut(s)	453
PciSI	GCTCTTC	2 cut(s)	211, 953
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	118, 679
PflMI	CCANNNNNTGG	2 cut(s)	77, 503
PfoI	TCCNGGA	1 cut(s)	42
PinAI	ACCGGT	1 cut(s)	24
PkrI	GCNGC	2 cut(s)	17, 173
PscI	ACATGT	1 cut(s)	453
PshAI	GACNNNNGTC	1 cut(s)	607
Psp124BI	GAGCTC	1 cut(s)	948
PspFI	CCCAGC	1 cut(s)	184
PspN4I	GGNNCC	3 cut(s)	414, 484, 739
PspPI	GGNCC	1 cut(s)	737
PsuI	RGATCY	2 cut(s)	412, 482
RseI	CAYNNNNRTG	1 cut(s)	269
SacI	GAGCTC	1 cut(s)	948
SapI	GCTCTTC	2 cut(s)	211, 953
SaqAI	TTAA	3 cut(s)	21, 321, 396
SatI	GCNGC	2 cut(s)	16, 172
Sau3AI	GATC	4 cut(s)	201, 412, 482, 779
Sau96I	GGNCC	1 cut(s)	737
ScrFI	CCNGG	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	948
SfaNI	GCATC	3 cut(s)	390, 838, 972
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	1 cut(s)	737
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	2 cut(s)	395, 941
SmoI	CTYRAG	2 cut(s)	395, 941
Sse9I	AATT	5 cut(s)	66, 155, 282, 582, 732
SsiI	CCGC	2 cut(s)	181, 792
SspMI	CTAG	1 cut(s)	683
SstI	GAGCTC	1 cut(s)	948
StyD4I	CCNGG	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	975
TaaI	ACNGT	1 cut(s)	575
TaqI	TCGA	1 cut(s)	258
TasI	AATT	5 cut(s)	66, 155, 282, 582, 732
TfiI	GAWTC	2 cut(s)	118, 679
Tru1I	TTAA	3 cut(s)	21, 321, 396
Tru9I	TTAA	3 cut(s)	21, 321, 396
TseFI	GTSAC	2 cut(s)	520, 912
TseI	GCWGC	2 cut(s)	15, 171
Tsp45I	GTSAC	2 cut(s)	520, 912
TspDTI	ATGAA	5 cut(s)	196, 275, 449, 518, 950
TspGWI	ACGGA	1 cut(s)	604
Van91I	CCANNNNNTGG	2 cut(s)	77, 503
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	737
XapI	RAATTY	1 cut(s)	282
XceI	RCATGY	2 cut(s)	457, 984
XspI	CTAG	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.