Rmu_sc0006827.1_g000035

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006827.1
OG0031321
Physical Location & Seq
Forward (+)
134880 .. 136672
1793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006827.1_g000035.1.cds

Sequence Viewer

Length: 516 bp
atgtttcattggcaagcaacgattatgggatcccctaatagcccatatgctggaggtgtgttccttgtcaccattcatttccctcctgactatcctttcaaaccacctaaggttgcatttaggactaaggtcttccgtcttccatccatatataccaacagcaatggaagcatttgtcttgatatcctcaaagagcaatggaatctagcccttattatctctaaggttcggctttgttatcttgcaggaacaataattggacccttaggaggaggttggaaggtgaaagatgagggagagggatcaagaggttgcggtggagaaaggggctgtcgtggtggtggtggcggctttggcaaagatagagttgatgcactcatgcgagaaaacttgcgaggagctaaggagtttgggataactgaagatgatttgaagtcacttcaaagtgttggtcagatgaaccttgagctcttccttagagtgggcatcaaaccacccaaggcatgttttatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624
Pfam Domains
Protein Families
UQ_con

Protein Analysis

171

Amino Acids

18.67

Weight (kDa)

9.3

Isoelectric Point (pI)

31.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031321)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004838.1_g000004 Rmu_sc0006827.1_g000035

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 50
AciI CCGC 2 cut(s) 315, 348
AclWI GGATC 3 cut(s) 24, 37, 310
AcuI CTGAAG 1 cut(s) 441
AfiI CCNNNNNNNGG 3 cut(s) 50, 269, 481
AgsI TTSAA 3 cut(s) 100, 433, 443
AluBI AGCT 2 cut(s) 401, 469
AluI AGCT 2 cut(s) 401, 469
Alw21I GWGCWC 1 cut(s) 471
AlwI GGATC 3 cut(s) 24, 37, 310
ArsI GACNNNNNNTTYG 2 cut(s) 436, 468
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 2 cut(s) 61, 295
AvaII GGWCC 1 cut(s) 260
AxyI CCTNAGG 2 cut(s) 108, 265
BamHI GGATCC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 471
BbsI GAAGAC 2 cut(s) 124, 131
Bbv12I GWGCWC 1 cut(s) 471
BccI CCATC 1 cut(s) 151
BfaI CTAG 1 cut(s) 206
BisI GCNGC 1 cut(s) 349
BlsI GCNGC 1 cut(s) 350
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 2 cut(s) 31, 262
BmsI GCATC 2 cut(s) 361, 495
BoxI GACNNNNGTC 1 cut(s) 128
BpiI GAAGAC 2 cut(s) 124, 131
BpmI CTGGAG 1 cut(s) 72
Bpu10I CCTNAGC 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 485
BsaJI CCNNGG 1 cut(s) 498
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 269, 481
Bse21I CCTNAGG 2 cut(s) 108, 265
Bse3DI GCAATG 2 cut(s) 169, 203
BseDI CCNNGG 1 cut(s) 498
BseGI GGATG 1 cut(s) 143
BseLI CCNNNNNNNGG 3 cut(s) 50, 269, 481
BseMI GCAATG 2 cut(s) 169, 203
BseRI GAGGAG 2 cut(s) 285, 411
BsiHKAI GWGCWC 1 cut(s) 471
BslI CCNNNNNNNGG 3 cut(s) 50, 269, 481
Bsp1286I GDGCHC 1 cut(s) 471
Bsp143I GATC 2 cut(s) 29, 302
BspACI CCGC 2 cut(s) 315, 348
BspLI GGNNCC 2 cut(s) 31, 262
BspPI GGATC 3 cut(s) 24, 37, 310
BspQI GCTCTTC 1 cut(s) 476
BsrDI GCAATG 2 cut(s) 169, 203
BssECI CCNNGG 1 cut(s) 498
BssMI GATC 2 cut(s) 29, 302
BssT1I CCWWGG 1 cut(s) 498
Bst6I CTCTTC 1 cut(s) 476
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 6 cut(s) 108, 126, 222, 265, 402, 476
BstF5I GGATG 1 cut(s) 143
BstKTI GATC 2 cut(s) 32, 305
BstMBI GATC 2 cut(s) 29, 302
BstMWI GCNNNNNNNGC 2 cut(s) 168, 354
BstNSI RCATGY 1 cut(s) 507
BstPAI GACNNNNGTC 1 cut(s) 128
BstV2I GAAGAC 2 cut(s) 124, 131
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
Bsu36I CCTNAGG 2 cut(s) 108, 265
BtsCI GGATG 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 260
CviAII CATG 2 cut(s) 379, 504
CviJI RGCY 7 cut(s) 42, 209, 232, 330, 351, 401, 469
CviKI_1 RGCY 7 cut(s) 42, 209, 232, 330, 351, 401, 469
DdeI CTNAG 6 cut(s) 108, 126, 222, 265, 402, 476
DpnI GATC 2 cut(s) 31, 304
DpnII GATC 2 cut(s) 29, 302
Eam1104I CTCTTC 1 cut(s) 476
EarI CTCTTC 1 cut(s) 476
Ecl136II GAGCTC 1 cut(s) 469
Eco130I CCWWGG 1 cut(s) 498
Eco24I GRGCYC 1 cut(s) 471
Eco32I GATATC 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 260
Eco53kI GAGCTC 1 cut(s) 469
Eco57I CTGAAG 1 cut(s) 441
Eco81I CCTNAGG 2 cut(s) 108, 265
EcoICRI GAGCTC 1 cut(s) 469
EcoRV GATATC 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 498
EcoT38I GRGCYC 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 2 cut(s) 382, 507
FatI CATG 2 cut(s) 378, 503
FauNDI CATATG 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 349
FokI GGATG 1 cut(s) 130
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 1 cut(s) 349
FspBI CTAG 1 cut(s) 206
GluI GCNGC 1 cut(s) 349
GsuI CTGGAG 1 cut(s) 72
Hin1II CATG 2 cut(s) 382, 507
HinfI GANTC 1 cut(s) 202
HphI GGTGA 2 cut(s) 61, 295
Hpy188I TCNGA 1 cut(s) 456
Hpy188III TCNNGA 3 cut(s) 86, 179, 306
HpyAV CCTTC 1 cut(s) 274
HpyCH4V TGCA 3 cut(s) 116, 245, 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 354
HpyF3I CTNAG 6 cut(s) 108, 126, 222, 265, 402, 476
Hsp92II CATG 2 cut(s) 382, 507
Kzo9I GATC 2 cut(s) 29, 302
LguI GCTCTTC 1 cut(s) 476
LmnI GCTCC 1 cut(s) 398
LpnPI CCDG 3 cut(s) 36, 99, 231
LweI GCATC 2 cut(s) 361, 495
MaeI CTAG 1 cut(s) 206
MaeIII GTNAC 2 cut(s) 67, 435
MalI GATC 2 cut(s) 31, 304
MboI GATC 2 cut(s) 29, 302
MboII GAAGA 4 cut(s) 124, 131, 434, 463
MflI RGATCY 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 471
MluCI AATT 1 cut(s) 255
MmeI TCCRAC 1 cut(s) 257
MnlI CCTC 9 cut(s) 47, 93, 197, 263, 266, 286, 292, 302, 389
MwoI GCNNNNNNNGC 2 cut(s) 168, 354
NdeI CATATG 1 cut(s) 46
NdeII GATC 2 cut(s) 29, 302
NlaIII CATG 2 cut(s) 382, 507
NlaIV GGNNCC 2 cut(s) 31, 262
NmuCI GTSAC 2 cut(s) 67, 435
NspI RCATGY 1 cut(s) 507
PciSI GCTCTTC 1 cut(s) 476
PfeI GAWTC 1 cut(s) 202
PflMI CCANNNNNTGG 1 cut(s) 50
PkrI GCNGC 1 cut(s) 350
PshAI GACNNNNGTC 1 cut(s) 128
Psp124BI GAGCTC 1 cut(s) 471
PspN4I GGNNCC 2 cut(s) 31, 262
PspPI GGNCC 1 cut(s) 260
PsuI RGATCY 1 cut(s) 29
SacI GAGCTC 1 cut(s) 471
SapI GCTCTTC 1 cut(s) 476
SatI GCNGC 1 cut(s) 349
Sau3AI GATC 2 cut(s) 29, 302
Sau96I GGNCC 1 cut(s) 260
SduI GDGCHC 1 cut(s) 471
SfaNI GCATC 2 cut(s) 361, 495
SinI GGWCC 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 1 cut(s) 255
SsiI CCGC 2 cut(s) 315, 348
SspMI CTAG 1 cut(s) 206
SstI GAGCTC 1 cut(s) 471
StyI CCWWGG 1 cut(s) 498
TasI AATT 1 cut(s) 255
TauI GCSGC 1 cut(s) 351
TfiI GAWTC 1 cut(s) 202
TseFI GTSAC 2 cut(s) 67, 435
Tsp45I GTSAC 2 cut(s) 67, 435
TspDTI ATGAA 2 cut(s) 65, 473
TspGWI ACGGA 1 cut(s) 125
Van91I CCANNNNNTGG 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 260
XceI RCATGY 1 cut(s) 507
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.