gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0004900.1_g000029 Rmu_sc0007721.1_g000002 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AluBI | AGCT | 2 cut(s) | 155, 161 |
| AluI | AGCT | 2 cut(s) | 155, 161 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 208, 240 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BccI | CCATC | 2 cut(s) | 92, 215 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BfaI | CTAG | 3 cut(s) | 107, 126, 244 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 2 cut(s) | 94, 188 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseGI | GGATG | 3 cut(s) | 179, 210, 238 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsnI | GGCC | 1 cut(s) | 95 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspHI | TCATGA | 1 cut(s) | 70 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 1 cut(s) | 184 |
| BstF5I | GGATG | 3 cut(s) | 179, 210, 238 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 197 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 3 cut(s) | 179, 210, 238 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 1 cut(s) | 70 |
| CviAII | CATG | 1 cut(s) | 71 |
| CviJI | RGCY | 7 cut(s) | 48, 95, 124, 129, 155, 161, 206 |
| CviKI_1 | RGCY | 7 cut(s) | 48, 95, 124, 129, 155, 161, 206 |
| DdeI | CTNAG | 1 cut(s) | 184 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| FaeI | CATG | 1 cut(s) | 74 |
| FaiI | YATR | 3 cut(s) | 72, 228, 230 |
| FatI | CATG | 1 cut(s) | 70 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FokI | GGATG | 2 cut(s) | 166, 197 |
| FspBI | CTAG | 3 cut(s) | 107, 126, 244 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| Hin1II | CATG | 1 cut(s) | 74 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 5 cut(s) | 102, 115, 167, 220, 236 |
| Hpy188III | TCNNGA | 2 cut(s) | 71, 119 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 197 |
| HpyF3I | CTNAG | 1 cut(s) | 184 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| Hsp92II | CATG | 1 cut(s) | 74 |
| LpnPI | CCDG | 6 cut(s) | 23, 30, 46, 95, 116, 143 |
| LweI | GCATC | 2 cut(s) | 94, 188 |
| MaeI | CTAG | 3 cut(s) | 107, 126, 244 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 1 cut(s) | 5 |
| MluCI | AATT | 2 cut(s) | 17, 141 |
| MlyI | GAGTC | 1 cut(s) | 214 |
| MnlI | CCTC | 1 cut(s) | 181 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 197 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NlaIII | CATG | 1 cut(s) | 74 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 70 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 167, 236 |
| PleI | GAGTC | 1 cut(s) | 214 |
| PpsI | GAGTC | 1 cut(s) | 214 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SchI | GAGTC | 1 cut(s) | 214 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SetI | ASST | 5 cut(s) | 12, 65, 138, 157, 163 |
| SfaNI | GCATC | 2 cut(s) | 94, 188 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 2 cut(s) | 17, 141 |
| SspI | AATATT | 1 cut(s) | 56 |
| SspMI | CTAG | 3 cut(s) | 107, 126, 244 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 1 cut(s) | 120 |
| TasI | AATT | 2 cut(s) | 17, 141 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 167, 236 |
| TspDTI | ATGAA | 1 cut(s) | 59 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XspI | CTAG | 3 cut(s) | 107, 126, 244 |