Rmu_sc0007721.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007721.1
OG0031326
Physical Location & Seq
Forward (+)
2584 .. 7638
5055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007721.1_g000002.1.cds

Sequence Viewer

Length: 978 bp
atgccctctctatcttctatttcccccaatttaaaccaaaagctcatcaccagatcaatccagccacccacaccataccaatcaaatctcgctgtaaaccccgctcaaacttcactgctccaatggtgcaatccctggtgccccagatggaagtgcctttcaaaatttgcggatgaaggaccagcagagctttggggtcttgagcatcatcgggtagagcgaccgggtgctggactccacgttcattcgtgttttaattcattggatctggcggcggcgacgatggtggtgtggaggtggagggcgtggtccttaaatctgagtaaccacagcaacacaccttatagcctccaaacccaggaacccagaaccggccgtatagtcactgaccggccaactcagttccctgtgcttgcttcgggccagcccaatccgaaaagaaaaaaaagaccagaagaaggaggtctcggtcaatgctatcaaaggaagaagaaggtcctggtcaaaggctggagagaaagaaaaaaagagagggagagccgcccacgtgctggccagaagaaaagaaagagaaagaagagaagaaaggcgcggcccattgaaacaggcccaagccgcatcctcagctcaggagcccaagccgcaggccaagccactgccacgtcagcagtcaacgaccgccagagacttttccgaccagttttccggctcttttccgaccacttttttaggatgagtaacctgaacaaattgcactttgctccattgagaacaaatggctctgaatatcacaggtgggttcgtgatgtctgccagcatctcaaggccgatggaatcctggatacgattctcgagcctagccaggacgtggtaactgttgagcaagctcaagctttggaaaaaaatagagcatccttagaggcaaataaggcgaaagccatcatcctaatgactcttcatatggatgattcgctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

325

Amino Acids

37.07

Weight (kDa)

10.48

Isoelectric Point (pI)

51.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031326)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004900.1_g000029 Rmu_sc0007721.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 138
AccB7I CCANNNNNTGG 2 cut(s) 551, 868
AccBSI CCGCTC 1 cut(s) 104
AccII CGCG 1 cut(s) 592
AciI CCGC 9 cut(s) 102, 170, 272, 275, 541, 592, 616, 642, 679
AclWI GGATC 1 cut(s) 273
AcoI YGGCCR 3 cut(s) 373, 392, 553
AcsI RAATTY 1 cut(s) 164
AcvI CACGTG 1 cut(s) 548
AfiI CCNNNNNNNGG 6 cut(s) 230, 358, 371, 458, 551, 868
AgsI TTSAA 2 cut(s) 162, 602
AjiI CACGTC 2 cut(s) 663, 868
AjnI CCWGG 5 cut(s) 134, 357, 498, 837, 861
AloI GAACNNNNNNTCC 2 cut(s) 225, 257
AluBI AGCT 5 cut(s) 43, 190, 627, 887, 893
AluI AGCT 5 cut(s) 43, 190, 627, 887, 893
Alw26I GTCTC 2 cut(s) 470, 679
AlwI GGATC 1 cut(s) 273
Ama87I CYCGRG 1 cut(s) 851
AoxI GGCC 8 cut(s) 373, 392, 421, 553, 593, 607, 646, 825
ApoI RAATTY 1 cut(s) 164
AspLEI GCGC 1 cut(s) 592
AspS9I GGNCC 6 cut(s) 179, 309, 421, 496, 594, 608
AsuC2I CCSGG 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 40
AvaI CYCGRG 1 cut(s) 851
AvaII GGWCC 3 cut(s) 179, 309, 496
BaeGI GKGCMC 1 cut(s) 143
BalI TGGCCA 1 cut(s) 555
BanI GGYRCC 1 cut(s) 138
BanII GRGCYC 1 cut(s) 637
BbrPI CACGTG 1 cut(s) 548
BbvCI CCTCAGC 1 cut(s) 623
BccI CCATC 4 cut(s) 141, 277, 824, 947
BceAI ACGGC 1 cut(s) 360
BciT130I CCWGG 5 cut(s) 136, 359, 500, 839, 863
BciVI GTATCC 1 cut(s) 835
BcnI CCSGG 1 cut(s) 225
BcoDI GTCTC 2 cut(s) 470, 679
BfaI CTAG 2 cut(s) 858, 976
BfuI GTATCC 1 cut(s) 835
BisI GCNGC 6 cut(s) 273, 276, 541, 593, 616, 642
BlsI GCNGC 6 cut(s) 274, 277, 542, 594, 617, 643
Bme1390I CCNGG 6 cut(s) 136, 225, 359, 500, 839, 863
Bme18I GGWCC 3 cut(s) 179, 309, 496
BmeT110I CYCGRG 1 cut(s) 851
BmgBI CACGTC 2 cut(s) 663, 868
BmgT120I GGNCC 6 cut(s) 179, 309, 421, 496, 594, 608
BmiI GGNNCC 3 cut(s) 140, 363, 634
BmrFI CCNGG 6 cut(s) 136, 225, 359, 500, 839, 863
BmsI GCATC 4 cut(s) 214, 627, 826, 920
BpmI CTGGAG 1 cut(s) 532
Bpu10I CCTNAGC 2 cut(s) 623, 628
BpuEI CTTGAG 3 cut(s) 221, 806, 873
BpuMI CCSGG 1 cut(s) 225
BsaAI YACGTR 1 cut(s) 548
BsaI GGTCTC 1 cut(s) 470
BsaJI CCNNGG 2 cut(s) 134, 357
Bsc4I CCNNNNNNNGG 6 cut(s) 230, 358, 371, 458, 551, 868
Bse118I RCCGGY 2 cut(s) 371, 390
Bse1I ACTGG 1 cut(s) 698
BseBI CCWGG 5 cut(s) 136, 359, 500, 839, 863
BseDI CCNNGG 2 cut(s) 134, 357
BseGI GGATG 6 cut(s) 178, 618, 738, 911, 942, 970
BseLI CCNNNNNNNGG 6 cut(s) 230, 358, 371, 458, 551, 868
BseMII CTCAG 4 cut(s) 311, 413, 637, 642
BseNI ACTGG 1 cut(s) 698
BseSI GKGCMC 1 cut(s) 143
BseX3I CGGCCG 1 cut(s) 373
Bsh1236I CGCG 1 cut(s) 592
Bsh1285I CGRYCG 3 cut(s) 224, 376, 679
BshFI GGCC 8 cut(s) 375, 394, 423, 555, 595, 609, 648, 827
BshNI GGYRCC 1 cut(s) 138
BsiEI CGRYCG 3 cut(s) 224, 376, 679
BsiHKCI CYCGRG 1 cut(s) 851
BsiSI CCGG 4 cut(s) 224, 372, 391, 706
BslI CCNNNNNNNGG 6 cut(s) 230, 358, 371, 458, 551, 868
BsmAI GTCTC 2 cut(s) 470, 679
BsnI GGCC 8 cut(s) 375, 394, 423, 555, 595, 609, 648, 827
Bso31I GGTCTC 1 cut(s) 470
BsoBI CYCGRG 1 cut(s) 851
Bsp1286I GDGCHC 2 cut(s) 143, 637
Bsp143I GATC 2 cut(s) 53, 265
BspACI CCGC 9 cut(s) 102, 170, 272, 275, 541, 592, 616, 642, 679
BspANI GGCC 8 cut(s) 375, 394, 423, 555, 595, 609, 648, 827
BspCNI CTCAG 4 cut(s) 312, 412, 636, 641
BspFNI CGCG 1 cut(s) 592
BspLI GGNNCC 3 cut(s) 140, 363, 634
BspPI GGATC 1 cut(s) 273
BspT107I GGYRCC 1 cut(s) 138
BspTNI GGTCTC 1 cut(s) 470
BsrBI CCGCTC 1 cut(s) 104
BsrFI RCCGGY 2 cut(s) 371, 390
BsrI ACTGG 1 cut(s) 698
BssAI RCCGGY 2 cut(s) 371, 390
BssECI CCNNGG 2 cut(s) 134, 357
BssMI GATC 2 cut(s) 53, 265
Bst2UI CCWGG 5 cut(s) 136, 359, 500, 839, 863
Bst4CI ACNGT 1 cut(s) 877
Bst6I CTCTTC 2 cut(s) 572, 960
BstBAI YACGTR 1 cut(s) 548
BstC8I GCNNGC 6 cut(s) 414, 425, 553, 646, 815, 885
BstDEI CTNAG 5 cut(s) 320, 399, 623, 628, 916
BstF5I GGATG 6 cut(s) 178, 618, 738, 911, 942, 970
BstFNI CGCG 1 cut(s) 592
BstHHI GCGC 1 cut(s) 592
BstKTI GATC 2 cut(s) 56, 268
BstMAI GTCTC 2 cut(s) 470, 679
BstMBI GATC 2 cut(s) 53, 265
BstMCI CGRYCG 3 cut(s) 224, 376, 679
BstMWI GCNNNNNNNGC 6 cut(s) 615, 624, 641, 650, 665, 929
BstNI CCWGG 5 cut(s) 136, 359, 500, 839, 863
BstSCI CCNGG 6 cut(s) 134, 223, 357, 498, 837, 861
BstSLI GKGCMC 1 cut(s) 143
BstUI CGCG 1 cut(s) 592
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BstZI CGGCCG 1 cut(s) 373
BsuI GTATCC 1 cut(s) 835
BsuRI GGCC 8 cut(s) 375, 394, 423, 555, 595, 609, 648, 827
BtrI CACGTC 2 cut(s) 663, 868
BtsCI GGATG 6 cut(s) 178, 618, 738, 911, 942, 970
BtsI GCAGTG 2 cut(s) 113, 654
BtsIMutI CAGTG 3 cut(s) 113, 384, 654
Cac8I GCNNGC 6 cut(s) 414, 425, 553, 646, 815, 885
CfoI GCGC 1 cut(s) 592
Cfr10I RCCGGY 2 cut(s) 371, 390
Cfr13I GGNCC 6 cut(s) 179, 309, 421, 496, 594, 608
DdeI CTNAG 5 cut(s) 320, 399, 623, 628, 916
DpnI GATC 2 cut(s) 55, 267
DpnII GATC 2 cut(s) 53, 265
DraI TTTAAA 1 cut(s) 33
EaeI YGGCCR 3 cut(s) 373, 392, 553
EagI CGGCCG 1 cut(s) 373
Eam1104I CTCTTC 2 cut(s) 572, 960
EarI CTCTTC 2 cut(s) 572, 960
EclXI CGGCCG 1 cut(s) 373
Eco24I GRGCYC 1 cut(s) 637
Eco31I GGTCTC 1 cut(s) 470
Eco47I GGWCC 3 cut(s) 179, 309, 496
Eco52I CGGCCG 1 cut(s) 373
Eco72I CACGTG 1 cut(s) 548
Eco88I CYCGRG 1 cut(s) 851
EcoO109I RGGNCCY 1 cut(s) 496
EcoRII CCWGG 5 cut(s) 134, 357, 498, 837, 861
EcoT38I GRGCYC 1 cut(s) 637
FaiI YATR 5 cut(s) 76, 345, 380, 960, 962
FauI CCCGC 1 cut(s) 109
FauNDI CATATG 1 cut(s) 960
Fnu4HI GCNGC 6 cut(s) 273, 276, 541, 593, 616, 642
FokI GGATG 5 cut(s) 185, 605, 745, 898, 929
FriOI GRGCYC 1 cut(s) 637
Fsp4HI GCNGC 6 cut(s) 273, 276, 541, 593, 616, 642
FspBI CTAG 2 cut(s) 858, 976
GlaI GCGC 1 cut(s) 591
GluI GCNGC 6 cut(s) 273, 276, 541, 593, 616, 642
GsuI CTGGAG 1 cut(s) 532
HaeIII GGCC 8 cut(s) 375, 394, 423, 555, 595, 609, 648, 827
HapII CCGG 4 cut(s) 224, 372, 391, 706
HhaI GCGC 1 cut(s) 592
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HincII GTYRAC 1 cut(s) 673
HindII GTYRAC 1 cut(s) 673
HindIII AAGCTT 1 cut(s) 891
HinfI GANTC 5 cut(s) 234, 834, 847, 952, 968
HpaII CCGG 4 cut(s) 224, 372, 391, 706
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 2 cut(s) 97, 673
Hpy188I TCNGA 5 cut(s) 321, 435, 695, 718, 784
Hpy188III TCNNGA 4 cut(s) 200, 630, 803, 851
Hpy8I GTNNAC 2 cut(s) 97, 673
Hpy99I CGWCG 1 cut(s) 283
HpyAV CCTTC 3 cut(s) 170, 452, 487
HpyCH4III ACNGT 1 cut(s) 877
HpyCH4IV ACGT 4 cut(s) 240, 547, 662, 867
HpyCH4V TGCA 2 cut(s) 129, 754
HpyF10VI GCNNNNNNNGC 6 cut(s) 615, 624, 641, 650, 665, 929
HpyF3I CTNAG 5 cut(s) 320, 399, 623, 628, 916
HpySE526I ACGT 4 cut(s) 240, 547, 662, 867
HspAI GCGC 1 cut(s) 590
Kzo9I GATC 2 cut(s) 53, 265
LmnI GCTCC 3 cut(s) 123, 632, 766
LweI GCATC 4 cut(s) 214, 627, 826, 920
MaeI CTAG 2 cut(s) 858, 976
MaeII ACGT 4 cut(s) 240, 547, 662, 867
MaeIII GTNAC 4 cut(s) 323, 382, 737, 871
MalI GATC 2 cut(s) 55, 267
MbiI CCGCTC 1 cut(s) 104
MboI GATC 2 cut(s) 53, 265
MboII GAAGA 8 cut(s) 6, 467, 499, 502, 571, 589, 594, 947
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 2 cut(s) 143, 637
MlsI TGGCCA 1 cut(s) 555
MluCI AATT 4 cut(s) 28, 164, 256, 749
MluNI TGGCCA 1 cut(s) 555
MlyI GAGTC 2 cut(s) 228, 946
MmeI TCCRAC 2 cut(s) 718, 741
MnlI CCTC 8 cut(s) 16, 288, 294, 359, 455, 525, 632, 913
Mox20I TGGCCA 1 cut(s) 555
MscI TGGCCA 1 cut(s) 555
MseI TTAA 3 cut(s) 32, 255, 314
MslI CAYNNNNRTG 2 cut(s) 947, 963
Msp20I TGGCCA 1 cut(s) 555
MspI CCGG 4 cut(s) 224, 372, 391, 706
MspR9I CCNGG 6 cut(s) 136, 225, 359, 500, 839, 863
MvaI CCWGG 5 cut(s) 136, 359, 500, 839, 863
MvnI CGCG 1 cut(s) 592
MwoI GCNNNNNNNGC 6 cut(s) 615, 624, 641, 650, 665, 929
NciI CCSGG 1 cut(s) 225
NdeI CATATG 1 cut(s) 960
NdeII GATC 2 cut(s) 53, 265
NlaIV GGNNCC 3 cut(s) 140, 363, 634
NmuCI GTSAC 1 cut(s) 382
PaeR7I CTCGAG 1 cut(s) 851
PcsI WCGNNNNNNNCGW 1 cut(s) 217
PfeI GAWTC 3 cut(s) 834, 847, 968
PflMI CCANNNNNTGG 2 cut(s) 551, 868
PfoI TCCNGGA 1 cut(s) 837
PkrI GCNGC 6 cut(s) 274, 277, 542, 594, 617, 643
PleI GAGTC 2 cut(s) 228, 946
PmaCI CACGTG 1 cut(s) 548
PmlI CACGTG 1 cut(s) 548
PpsI GAGTC 2 cut(s) 228, 946
Ppu21I YACGTR 1 cut(s) 548
PpuMI RGGWCCY 1 cut(s) 496
Psp5II RGGWCCY 1 cut(s) 496
Psp6I CCWGG 5 cut(s) 134, 357, 498, 837, 861
PspCI CACGTG 1 cut(s) 548
PspGI CCWGG 5 cut(s) 134, 357, 498, 837, 861
PspN4I GGNNCC 3 cut(s) 140, 363, 634
PspPI GGNCC 6 cut(s) 179, 309, 421, 496, 594, 608
PspPPI RGGWCCY 1 cut(s) 496
PsuI RGATCY 1 cut(s) 265
RseI CAYNNNNRTG 2 cut(s) 947, 963
SaqAI TTAA 3 cut(s) 32, 255, 314
SatI GCNGC 6 cut(s) 273, 276, 541, 593, 616, 642
Sau3AI GATC 2 cut(s) 53, 265
Sau96I GGNCC 6 cut(s) 179, 309, 421, 496, 594, 608
SchI GAGTC 2 cut(s) 228, 946
ScrFI CCNGG 6 cut(s) 136, 225, 359, 500, 839, 863
SduI GDGCHC 2 cut(s) 143, 637
SfaNI GCATC 4 cut(s) 214, 627, 826, 920
Sfr274I CTCGAG 1 cut(s) 851
SinI GGWCC 3 cut(s) 179, 309, 496
SlaI CTCGAG 1 cut(s) 851
SmiMI CAYNNNNRTG 2 cut(s) 947, 963
SmlI CTYRAG 4 cut(s) 200, 821, 851, 888
SmoI CTYRAG 4 cut(s) 200, 821, 851, 888
Sse9I AATT 4 cut(s) 28, 164, 256, 749
SsiI CCGC 9 cut(s) 102, 170, 272, 275, 541, 592, 616, 642, 679
SspMI CTAG 2 cut(s) 858, 976
StyD4I CCNGG 6 cut(s) 134, 223, 357, 498, 837, 861
TaaI ACNGT 1 cut(s) 877
TaiI ACGT 4 cut(s) 243, 550, 665, 870
TaqI TCGA 1 cut(s) 852
TaqII GACCGA 1 cut(s) 458
TasI AATT 4 cut(s) 28, 164, 256, 749
TauI GCSGC 6 cut(s) 275, 278, 543, 595, 618, 644
TfiI GAWTC 3 cut(s) 834, 847, 968
Tru1I TTAA 3 cut(s) 32, 255, 314
Tru9I TTAA 3 cut(s) 32, 255, 314
TscAI CASTG 3 cut(s) 120, 391, 661
TseFI GTSAC 1 cut(s) 382
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 4 cut(s) 189, 233, 249, 947
TspRI CASTG 3 cut(s) 120, 391, 661
Van91I CCANNNNNTGG 2 cut(s) 551, 868
VpaK11BI GGWCC 3 cut(s) 179, 309, 496
XapI RAATTY 1 cut(s) 164
XcmI CCANNNNNNNNNTGG 1 cut(s) 189
XhoI CTCGAG 1 cut(s) 851
XspI CTAG 2 cut(s) 858, 976
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.