Rmu_sc0004966.1_g000008

Transmembrane protein 97-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004966.1
OG0031312
Physical Location & Seq
Reverse (-)
42125 .. 48049
5925 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 534 bp
atgcatttgcaggtgcctatatttgcagaactcacaagatcaggaagggctccggaaaagttattgacggtgtactattcgttcttgagtgtgggtgttgtagcgatacttcgtggattgcttcccaactcatcatcgaccaagttctcttctgcaaccattggcaagagacctgcctccggaggaggagcaccaagctgcacgatccgacatgctcgagagaccttgagaggcgccgatgatgaacctgttgagcagtctggatctgaaaaagaatttgagatgaagtactacatcatggaaatccagtctggtcccaatgccacagtggtacctggtacagaagacgctggaggagggagggaaagagagaaagctctgtgtaccccagatttgggtgcccaaatcagatcttggtattaccggtgtcggggcgtgagcggcttgcctgcctcgccggtcgatgtggaagctaagttcgagtcgtcggagacctgtgagtgctatggtggtggaggtgaggcacggtggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2781

Protein Analysis

177

Amino Acids

19.04

Weight (kDa)

5.79

Isoelectric Point (pI)

69.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031312)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004618.1_g000019 Rmu_sc0004966.1_g000008

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 181
Acc65I GGTACC 1 cut(s) 331
AccB1I GGYRCC 4 cut(s) 13, 233, 331, 398
AccBSI CCGCTC 1 cut(s) 441
AccIII TCCGGA 2 cut(s) 52, 179
AciI CCGC 1 cut(s) 441
AclWI GGATC 2 cut(s) 199, 271
AcsI RAATTY 1 cut(s) 275
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 5 cut(s) 74, 290, 333, 340, 385
AfiI CCNNNNNNNGG 4 cut(s) 179, 394, 395, 430
AgeI ACCGGT 1 cut(s) 423
AjnI CCWGG 1 cut(s) 334
AleI CACNNNNGTG 1 cut(s) 529
AloI GAACNNNNNNTCC 2 cut(s) 461, 493
AluBI AGCT 3 cut(s) 198, 377, 473
AluI AGCT 3 cut(s) 198, 377, 473
Alw21I GWGCWC 1 cut(s) 193
Alw26I GTCTC 3 cut(s) 163, 215, 485
AlwI GGATC 2 cut(s) 199, 271
Ama87I CYCGRG 1 cut(s) 216
Aor13HI TCCGGA 2 cut(s) 52, 179
ApeKI GCWGC 1 cut(s) 198
ApoI RAATTY 1 cut(s) 275
AsiGI ACCGGT 1 cut(s) 423
Asp718I GGTACC 1 cut(s) 331
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 314
AsuHPI GGTGA 1 cut(s) 530
AvaI CYCGRG 1 cut(s) 216
AvaII GGWCC 1 cut(s) 314
BaeGI GKGCMC 1 cut(s) 403
BaeI ACNNNNGTAYC 2 cut(s) 315, 348
BanI GGYRCC 4 cut(s) 13, 233, 331, 398
BanII GRGCYC 1 cut(s) 52
BarI GAAGNNNNNNTAC 2 cut(s) 93, 125
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 336
BcoDI GTCTC 3 cut(s) 163, 215, 485
BfoI RGCGCY 1 cut(s) 237
BfuAI ACCTGC 1 cut(s) 181
BglII AGATCT 1 cut(s) 410
BisI GCNGC 2 cut(s) 199, 442
BlsI GCNGC 2 cut(s) 200, 443
BmcAI AGTACT 1 cut(s) 290
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 314
BmeT110I CYCGRG 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 6 cut(s) 15, 51, 235, 316, 333, 400
BmrFI CCNGG 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 351
BpmI CTGGAG 1 cut(s) 372
BpuEI CTTGAG 2 cut(s) 106, 247
BsaHI GRCGYC 1 cut(s) 234
BsaI GGTCTC 3 cut(s) 163, 215, 485
BsaWI WCCGGW 3 cut(s) 52, 179, 423
Bsc4I CCNNNNNNNGG 4 cut(s) 179, 394, 395, 430
Bse118I RCCGGY 2 cut(s) 423, 457
Bse1I ACTGG 1 cut(s) 307
BseAI TCCGGA 2 cut(s) 52, 179
BseBI CCWGG 1 cut(s) 336
BseLI CCNNNNNNNGG 4 cut(s) 179, 394, 395, 430
BseNI ACTGG 1 cut(s) 307
BseRI GAGGAG 3 cut(s) 198, 201, 369
BseSI GKGCMC 1 cut(s) 403
BseXI GCAGC 1 cut(s) 185
BsgI GTGCAG 1 cut(s) 184
Bsh1285I CGRYCG 1 cut(s) 462
BshNI GGYRCC 4 cut(s) 13, 233, 331, 398
BshTI ACCGGT 1 cut(s) 423
BsiEI CGRYCG 1 cut(s) 462
BsiHKAI GWGCWC 1 cut(s) 193
BsiHKCI CYCGRG 1 cut(s) 216
BsiSI CCGG 4 cut(s) 53, 180, 424, 458
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 4 cut(s) 179, 394, 395, 430
BsmAI GTCTC 3 cut(s) 163, 215, 485
BsmFI GGGAC 1 cut(s) 300
Bso31I GGTCTC 3 cut(s) 163, 215, 485
BsoBI CYCGRG 1 cut(s) 216
Bsp1286I GDGCHC 3 cut(s) 52, 193, 403
Bsp13I TCCGGA 2 cut(s) 52, 179
Bsp143I GATC 4 cut(s) 38, 204, 263, 410
BspACI CCGC 1 cut(s) 441
BspEI TCCGGA 2 cut(s) 52, 179
BspLI GGNNCC 6 cut(s) 15, 51, 235, 316, 333, 400
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 2 cut(s) 199, 271
BspT107I GGYRCC 4 cut(s) 13, 233, 331, 398
BspTNI GGTCTC 3 cut(s) 163, 215, 485
BsrBI CCGCTC 1 cut(s) 441
BsrFI RCCGGY 2 cut(s) 423, 457
BsrI ACTGG 1 cut(s) 307
BssAI RCCGGY 2 cut(s) 423, 457
BssMI GATC 4 cut(s) 38, 204, 263, 410
BssNI GRCGYC 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 3 cut(s) 70, 328, 528
Bst6I CTCTTC 1 cut(s) 154
BstACI GRCGYC 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 446, 450
BstDEI CTNAG 1 cut(s) 474
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 4 cut(s) 41, 207, 266, 413
BstMAI GTCTC 3 cut(s) 163, 215, 485
BstMBI GATC 4 cut(s) 38, 204, 263, 410
BstMCI CGRYCG 1 cut(s) 462
BstMWI GCNNNNNNNGC 2 cut(s) 441, 454
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 334
BstSLI GKGCMC 1 cut(s) 403
BstV1I GCAGC 1 cut(s) 185
BstV2I GAAGAC 1 cut(s) 351
BstX2I RGATCY 2 cut(s) 263, 410
BstYI RGATCY 2 cut(s) 263, 410
BtsIMutI CAGTG 1 cut(s) 333
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 2 cut(s) 446, 450
CfoI GCGC 1 cut(s) 236
Cfr10I RCCGGY 2 cut(s) 423, 457
Cfr13I GGNCC 1 cut(s) 314
CseI GACGC 1 cut(s) 356
CsiI ACCWGGT 1 cut(s) 334
Csp6I GTAC 5 cut(s) 73, 289, 332, 339, 384
CspAI ACCGGT 1 cut(s) 423
CviAII CATG 2 cut(s) 212, 298
CviJI RGCY 5 cut(s) 50, 198, 377, 444, 473
CviKI_1 RGCY 5 cut(s) 50, 198, 377, 444, 473
CviQI GTAC 5 cut(s) 73, 289, 332, 339, 384
DdeI CTNAG 1 cut(s) 474
DinI GGCGCC 1 cut(s) 235
DpnI GATC 4 cut(s) 40, 206, 265, 412
DpnII GATC 4 cut(s) 38, 204, 263, 410
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 52
Eco31I GGTCTC 3 cut(s) 163, 215, 485
Eco47I GGWCC 1 cut(s) 314
Eco88I CYCGRG 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 334
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 52
EgeI GGCGCC 1 cut(s) 235
EheI GGCGCC 1 cut(s) 235
FaeI CATG 2 cut(s) 215, 301
FaiI YATR 4 cut(s) 20, 213, 299, 507
FaqI GGGAC 1 cut(s) 300
FatI CATG 2 cut(s) 211, 297
Fnu4HI GCNGC 2 cut(s) 199, 442
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 2 cut(s) 199, 442
GlaI GCGC 1 cut(s) 235
GluI GCNGC 2 cut(s) 199, 442
GsuI CTGGAG 1 cut(s) 372
HaeII RGCGCY 1 cut(s) 237
HapII CCGG 4 cut(s) 53, 180, 424, 458
HgaI GACGC 1 cut(s) 356
HhaI GCGC 1 cut(s) 236
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 2 cut(s) 215, 301
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HinfI GANTC 1 cut(s) 482
HpaII CCGG 4 cut(s) 53, 180, 424, 458
HphI GGTGA 1 cut(s) 530
Hpy166II GTNNAC 2 cut(s) 73, 384
Hpy188I TCNGA 4 cut(s) 209, 268, 410, 490
Hpy188III TCNNGA 6 cut(s) 42, 53, 85, 180, 218, 261
Hpy8I GTNNAC 2 cut(s) 73, 384
Hpy99I CGWCG 1 cut(s) 490
HpyAV CCTTC 1 cut(s) 39
HpyCH4III ACNGT 3 cut(s) 70, 328, 528
HpyCH4V TGCA 5 cut(s) 4, 10, 26, 155, 201
HpyF10VI GCNNNNNNNGC 2 cut(s) 441, 454
HpyF3I CTNAG 1 cut(s) 474
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 2 cut(s) 215, 301
HspAI GCGC 1 cut(s) 234
KasI GGCGCC 1 cut(s) 233
Kpn2I TCCGGA 2 cut(s) 52, 179
KpnI GGTACC 1 cut(s) 335
Kzo9I GATC 4 cut(s) 38, 204, 263, 410
LmnI GCTCC 2 cut(s) 55, 188
Lsp1109I GCAGC 1 cut(s) 185
MabI ACCWGGT 1 cut(s) 334
MalI GATC 4 cut(s) 40, 206, 265, 412
MbiI CCGCTC 1 cut(s) 441
MboI GATC 4 cut(s) 38, 204, 263, 410
MboII GAAGA 2 cut(s) 141, 356
MflI RGATCY 2 cut(s) 263, 410
MhlI GDGCHC 3 cut(s) 52, 193, 403
MluCI AATT 1 cut(s) 275
Mly113I GGCGCC 1 cut(s) 234
MlyI GAGTC 1 cut(s) 491
MmeI TCCRAC 2 cut(s) 232, 468
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 2 cut(s) 52, 179
MslI CAYNNNNRTG 1 cut(s) 529
MspI CCGG 4 cut(s) 53, 180, 424, 458
MspR9I CCNGG 1 cut(s) 336
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 2 cut(s) 441, 454
NarI GGCGCC 1 cut(s) 234
NdeII GATC 4 cut(s) 38, 204, 263, 410
NlaIII CATG 2 cut(s) 215, 301
NlaIV GGNNCC 6 cut(s) 15, 51, 235, 316, 333, 400
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 215
OliI CACNNNNGTG 1 cut(s) 529
PaeR7I CTCGAG 1 cut(s) 216
PinAI ACCGGT 1 cut(s) 423
PkrI GCNGC 2 cut(s) 200, 443
PleI GAGTC 1 cut(s) 490
PluTI GGCGCC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 490
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 6 cut(s) 15, 51, 235, 316, 333, 400
PspPI GGNCC 1 cut(s) 314
PsrI GAACNNNNNNTAC 2 cut(s) 65, 97
PsuI RGATCY 2 cut(s) 263, 410
RsaI GTAC 5 cut(s) 74, 290, 333, 340, 385
RsaNI GTAC 5 cut(s) 73, 289, 332, 339, 384
RseI CAYNNNNRTG 1 cut(s) 529
SatI GCNGC 2 cut(s) 199, 442
Sau3AI GATC 4 cut(s) 38, 204, 263, 410
Sau96I GGNCC 1 cut(s) 314
ScaI AGTACT 1 cut(s) 290
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 3 cut(s) 52, 193, 403
SexAI ACCWGGT 1 cut(s) 334
SfoI GGCGCC 1 cut(s) 235
Sfr274I CTCGAG 1 cut(s) 216
SinI GGWCC 1 cut(s) 314
SlaI CTCGAG 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 529
SmlI CTYRAG 3 cut(s) 85, 216, 226
SmoI CTYRAG 3 cut(s) 85, 216, 226
Sse9I AATT 1 cut(s) 275
SsiI CCGC 1 cut(s) 441
SspDI GGCGCC 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 3 cut(s) 70, 328, 528
TaqI TCGA 4 cut(s) 137, 217, 462, 480
TasI AATT 1 cut(s) 275
TatI WGTACW 2 cut(s) 72, 288
TauI GCSGC 1 cut(s) 444
TscAI CASTG 1 cut(s) 333
TseI GCWGC 1 cut(s) 198
TspDTI ATGAA 2 cut(s) 258, 299
TspRI CASTG 1 cut(s) 333
VpaK11BI GGWCC 1 cut(s) 314
XapI RAATTY 1 cut(s) 275
XceI RCATGY 1 cut(s) 215
XcmI CCANNNNNNNNNTGG 1 cut(s) 325
XhoI CTCGAG 1 cut(s) 216
ZrmI AGTACT 1 cut(s) 290
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.