Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005045.1

Orthogroup ID

OG0023110

Physical Location & Seq

Genomic Coordinates Forward (+)

178946 .. 179408

Gene Structure 463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atggctaggcaaaactacaccggtggagggatgattttccccttgcccggtcaacacatcatcaatccttgctggtgcccggtgaaaaaaaaaaattgcactacacatgtagttcctcaaccaaccatcgctggcttgacttcatgcttgacttggaagatgaacgagaaagcccccgataacttcaagcttgacttcgctatcagcaatgagcaaaccaacgagaagggcaagaagatgtacattcaaactagaattgctcagtatccagaagagctatgggagttacgtacccaaggagtgaaggacaacacctacttctacgtgtgcggtctcaagggaatggagatgggaattgatgacatcatgtttcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009055 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009767 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0019904 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0045157 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0097159 GO:0098542 GO:0098796 GO:0098807 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

NAD_binding_1

Protein Analysis

125

Amino Acids

14.34

Weight (kDa)

8.27

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_1	PF00175	53 - 119	3.8e-06	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0023110)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005045.1_g000051
rosa_samantha	Rh5AG414300 Rh5BG429100 Rh5CG452500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	75
AciI	CCGC	1 cut(s)	330
AfaI	GTAC	2 cut(s)	242, 292
AfiI	CCNNNNNNNGG	2 cut(s)	27, 47
AflIII	ACRYGT	2 cut(s)	106, 324
AgeI	ACCGGT	1 cut(s)	20
AgsI	TTSAA	2 cut(s)	187, 248
AluBI	AGCT	2 cut(s)	190, 277
AluI	AGCT	2 cut(s)	190, 277
Alw26I	GTCTC	1 cut(s)	338
AsiGI	ACCGGT	1 cut(s)	20
AsuC2I	CCSGG	2 cut(s)	48, 80
AsuHPI	GGTGA	1 cut(s)	94
BaeGI	GKGCMC	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	75
BccI	CCATC	2 cut(s)	134, 343
BciVI	GTATCC	1 cut(s)	276
BcnI	CCSGG	2 cut(s)	48, 80
BcoDI	GTCTC	1 cut(s)	338
BfaI	CTAG	2 cut(s)	6, 252
BfuI	GTATCC	1 cut(s)	276
Bme1390I	CCNGG	2 cut(s)	48, 80
BmiI	GGNNCC	1 cut(s)	77
BmrFI	CCNGG	2 cut(s)	48, 80
BpuEI	CTTGAG	1 cut(s)	320
BpuMI	CCSGG	2 cut(s)	48, 80
BsaAI	YACGTR	2 cut(s)	290, 325
BsaI	GGTCTC	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	295
BsaWI	WCCGGW	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 47
Bse118I	RCCGGY	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	2 cut(s)	27, 47
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	80
BshNI	GGYRCC	1 cut(s)	75
BshTI	ACCGGT	1 cut(s)	20
BsiSI	CCGG	3 cut(s)	21, 48, 80
BslI	CCNNNNNNNGG	2 cut(s)	27, 47
BsmAI	GTCTC	1 cut(s)	338
Bso31I	GGTCTC	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp1407I	TGTACA	1 cut(s)	240
BspACI	CCGC	1 cut(s)	330
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	77
BspQI	GCTCTTC	1 cut(s)	267
BspT107I	GGYRCC	1 cut(s)	75
BspTNI	GGTCTC	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	20
BsrGI	TGTACA	1 cut(s)	240
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	295
BssT1I	CCWWGG	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	267
BstAUI	TGTACA	1 cut(s)	240
BstBAI	YACGTR	2 cut(s)	290, 325
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	36
BstMAI	GTCTC	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	110
BstSCI	CCNGG	2 cut(s)	46, 78
BstSLI	GKGCMC	1 cut(s)	80
BstSNI	TACGTA	1 cut(s)	290
BsuI	GTATCC	1 cut(s)	276
BtgZI	GCGATG	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	133
Cfr10I	RCCGGY	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	241, 291
CspAI	ACCGGT	1 cut(s)	20
CviAII	CATG	3 cut(s)	107, 144, 367
CviJI	RGCY	5 cut(s)	5, 135, 173, 190, 277
CviKI_1	RGCY	5 cut(s)	5, 135, 173, 190, 277
CviQI	GTAC	2 cut(s)	241, 291
DdeI	CTNAG	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco105I	TACGTA	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	295
Eco31I	GGTCTC	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	3 cut(s)	110, 147, 370
FaiI	YATR	4 cut(s)	108, 145, 280, 368
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FatI	CATG	3 cut(s)	106, 143, 366
FokI	GGATG	1 cut(s)	43
FspBI	CTAG	2 cut(s)	6, 252
HapII	CCGG	3 cut(s)	21, 48, 80
Hin1II	CATG	3 cut(s)	110, 147, 370
HincII	GTYRAC	1 cut(s)	53
HindII	GTYRAC	1 cut(s)	53
HindIII	AAGCTT	1 cut(s)	188
HpaII	CCGG	3 cut(s)	21, 48, 80
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	220, 298
HpyCH4IV	ACGT	2 cut(s)	289, 324
HpyCH4V	TGCA	1 cut(s)	99
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	2 cut(s)	289, 324
Hsp92II	CATG	3 cut(s)	110, 147, 370
LguI	GCTCTTC	1 cut(s)	267
LpnPI	CCDG	6 cut(s)	34, 58, 61, 93, 117, 282
MaeI	CTAG	2 cut(s)	6, 252
MaeII	ACGT	2 cut(s)	289, 324
MaeIII	GTNAC	1 cut(s)	285
MboII	GAAGA	3 cut(s)	169, 247, 284
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	3 cut(s)	94, 255, 354
MnlI	CCTC	2 cut(s)	20, 126
MspI	CCGG	3 cut(s)	21, 48, 80
MspR9I	CCNGG	2 cut(s)	48, 80
NciI	CCSGG	2 cut(s)	48, 80
NlaIII	CATG	3 cut(s)	110, 147, 370
NlaIV	GGNNCC	1 cut(s)	77
NspI	RCATGY	1 cut(s)	110
PciI	ACATGT	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	267
PinAI	ACCGGT	1 cut(s)	20
Ppu21I	YACGTR	2 cut(s)	290, 325
PscI	ACATGT	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	77
RsaI	GTAC	2 cut(s)	242, 292
RsaNI	GTAC	2 cut(s)	241, 291
SapI	GCTCTTC	1 cut(s)	267
ScrFI	CCNGG	2 cut(s)	48, 80
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	5 cut(s)	192, 279, 292, 317, 327
SgrAI	CRCCGGYG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
SnaBI	TACGTA	1 cut(s)	290
Sse9I	AATT	3 cut(s)	94, 255, 354
SsiI	CCGC	1 cut(s)	330
SspMI	CTAG	2 cut(s)	6, 252
StyD4I	CCNGG	2 cut(s)	46, 78
StyI	CCWWGG	1 cut(s)	295
TaiI	ACGT	2 cut(s)	292, 327
TasI	AATT	3 cut(s)	94, 255, 354
TatI	WGTACW	1 cut(s)	240
TspDTI	ATGAA	3 cut(s)	132, 176, 362
XceI	RCATGY	1 cut(s)	110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	276
XspI	CTAG	2 cut(s)	6, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.