Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0023110

Physical Location & Seq

Genomic Coordinates Reverse (-)

71571573 .. 71572262

Gene Structure 690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG414300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAACGAGAAAGCCCCCGATAACTTCAAGCTTGACTTCGCTGTCAGCAATGAGCAAACCAACGAGAAGGGCGAGAAGATGTACATTCAAACTAGAATTGCTCAGTATCCGGAAGAGCTATGGGAGTTACGTACCCAAGGAGTGAAGGACAACACCTACTTCTACGTGTGCGGTCTCAAGGGAATGGAGAAGGGAATTGATGACATGATGCTACACCATTTTCTTTGCAACCTTATGGAACAAGCAACTCAAAAACCCAATGCTTTAAACGATGAAAAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009055 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009767 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0019904 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0045157 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0097159 GO:0098542 GO:0098796 GO:0098807 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

NAD_binding_1

Protein Analysis

94

Amino Acids

11.02

Weight (kDa)

4.94

Isoelectric Point (pI)

17.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_1	PF00175	2 - 66	5.5e-07	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0023110)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005045.1_g000051
rosa_samantha	Rh5AG414300 Rh5BG429100 Rh5CG452500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
AccIII	TCCGGA	1 cut(s)	109
AciI	CCGC	1 cut(s)	171
AfaI	GTAC	2 cut(s)	83, 133
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	2 cut(s)	28, 89
AluBI	AGCT	2 cut(s)	31, 118
AluI	AGCT	2 cut(s)	31, 118
Alw26I	GTCTC	1 cut(s)	179
Aor13HI	TCCGGA	1 cut(s)	109
BciVI	GTATCC	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	93
BfuI	GTATCC	1 cut(s)	117
BmsI	GCATC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	161
BsaAI	YACGTR	2 cut(s)	131, 166
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	136
BsaWI	WCCGGW	1 cut(s)	109
Bse3DI	GCAATG	1 cut(s)	55
BseAI	TCCGGA	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	136
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	110
BsmAI	GTCTC	1 cut(s)	179
Bso31I	GGTCTC	1 cut(s)	179
Bsp13I	TCCGGA	1 cut(s)	109
Bsp1407I	TGTACA	1 cut(s)	81
BspACI	CCGC	1 cut(s)	171
BspCNI	CTCAG	1 cut(s)	115
BspEI	TCCGGA	1 cut(s)	109
BspQI	GCTCTTC	1 cut(s)	108
BspTNI	GGTCTC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	55
BsrGI	TGTACA	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	108
BstAUI	TGTACA	1 cut(s)	81
BstBAI	YACGTR	2 cut(s)	131, 166
BstDEI	CTNAG	1 cut(s)	102
BstMAI	GTCTC	1 cut(s)	179
BstSNI	TACGTA	1 cut(s)	131
BsuI	GTATCC	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	82, 132
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	3 cut(s)	14, 31, 118
CviKI_1	RGCY	3 cut(s)	14, 31, 118
CviQI	GTAC	2 cut(s)	82, 132
DdeI	CTNAG	1 cut(s)	102
DraI	TTTAAA	1 cut(s)	267
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco105I	TACGTA	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	136
Eco31I	GGTCTC	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	1 cut(s)	208
FaiI	YATR	3 cut(s)	121, 206, 236
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FatI	CATG	1 cut(s)	204
FspBI	CTAG	1 cut(s)	93
HapII	CCGG	1 cut(s)	110
Hin1II	CATG	1 cut(s)	208
HindIII	AAGCTT	1 cut(s)	29
HpaII	CCGG	1 cut(s)	110
Hpy188III	TCNNGA	1 cut(s)	110
HpyAV	CCTTC	3 cut(s)	61, 139, 184
HpyCH4IV	ACGT	2 cut(s)	130, 165
HpyCH4V	TGCA	1 cut(s)	228
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	2 cut(s)	130, 165
Hsp92II	CATG	1 cut(s)	208
Kpn2I	TCCGGA	1 cut(s)	109
LguI	GCTCTTC	1 cut(s)	108
LpnPI	CCDG	1 cut(s)	123
LweI	GCATC	1 cut(s)	198
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	2 cut(s)	130, 165
MaeIII	GTNAC	1 cut(s)	126
MboII	GAAGA	2 cut(s)	88, 125
MluCI	AATT	2 cut(s)	96, 195
MroI	TCCGGA	1 cut(s)	109
MseI	TTAA	2 cut(s)	266, 283
MspI	CCGG	1 cut(s)	110
NlaIII	CATG	1 cut(s)	208
PciSI	GCTCTTC	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
Ppu21I	YACGTR	2 cut(s)	131, 166
RsaI	GTAC	2 cut(s)	83, 133
RsaNI	GTAC	2 cut(s)	82, 132
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	266, 283
SetI	ASST	6 cut(s)	33, 120, 133, 158, 168, 234
SfaNI	GCATC	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SnaBI	TACGTA	1 cut(s)	131
Sse9I	AATT	2 cut(s)	96, 195
SsiI	CCGC	1 cut(s)	171
SspMI	CTAG	1 cut(s)	93
StyI	CCWWGG	1 cut(s)	136
TaiI	ACGT	2 cut(s)	133, 168
TasI	AATT	2 cut(s)	96, 195
TatI	WGTACW	1 cut(s)	81
Tru1I	TTAA	2 cut(s)	266, 283
Tru9I	TTAA	2 cut(s)	266, 283
TspDTI	ATGAA	1 cut(s)	17
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.