Rmu_sc0005104.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005104.1
OG0031334
Physical Location & Seq
Forward (+)
46761 .. 47084
324 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 324 bp
atgtcaaatgacaatactcacaagctcaactttcctgagttggatgcatcaggcatagattaccatagctgggtaactaatgttgagaataatctcactgccaaagggatcttgcccacaatcaaagaagatggttttgatgcacaatttgtgcattctacaaccaaaagtgctcaagctctcatcttgatgcgacgtcacatggataaatcactccgaatggagtacatgtcaatcaagaacccgagagatctgtgggttgcgcttgaagagcgttttggaaacattcaagattccctcctcccggacgtgaaggtccaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

107

Amino Acids

12.29

Weight (kDa)

5.73

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031334)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005104.1_g000007 Rmu_sc0006997.1_g000017

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 314
AatII GACGTC 1 cut(s) 199
AclWI GGATC 1 cut(s) 116
AcyI GRCGYC 1 cut(s) 196
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 70, 304
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 2 cut(s) 269, 290
AjiI CACGTC 1 cut(s) 310
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
AluBI AGCT 3 cut(s) 25, 69, 179
AluI AGCT 3 cut(s) 25, 69, 179
Alw21I GWGCWC 1 cut(s) 175
AlwI GGATC 1 cut(s) 116
Ama87I CYCGRG 1 cut(s) 244
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 1 cut(s) 316
AsuC2I CCSGG 1 cut(s) 305
AvaI CYCGRG 1 cut(s) 244
AvaII GGWCC 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 175
BccI CCATC 1 cut(s) 125
BcnI CCSGG 1 cut(s) 305
BglII AGATCT 1 cut(s) 250
Bme1390I CCNGG 1 cut(s) 305
Bme18I GGWCC 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 316
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 4 cut(s) 34, 56, 130, 180
BpuEI CTTGAG 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 305
BsaHI GRCGYC 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 304
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 2 cut(s) 70, 304
BseMII CTCAG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 290
BseYI CCCAGC 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 175
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 1 cut(s) 305
BslI CCNNNNNNNGG 2 cut(s) 70, 304
BsmI GAATGC 1 cut(s) 154
BsoBI CYCGRG 1 cut(s) 244
Bsp1286I GDGCHC 1 cut(s) 175
Bsp143I GATC 2 cut(s) 108, 250
BspCNI CTCAG 1 cut(s) 28
BspPI GGATC 1 cut(s) 116
BspQI GCTCTTC 1 cut(s) 264
BssMI GATC 2 cut(s) 108, 250
BssNI GRCGYC 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 264
BstACI GRCGYC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 36
BstF5I GGATG 1 cut(s) 49
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 2 cut(s) 111, 253
BstMBI GATC 2 cut(s) 108, 250
BstMWI GCNNNNNNNGC 1 cut(s) 271
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 303
BstX2I RGATCY 2 cut(s) 108, 250
BstYI RGATCY 2 cut(s) 108, 250
BtrI CACGTC 1 cut(s) 310
BtsCI GGATG 1 cut(s) 49
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 96
CfoI GCGC 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 316
Csp6I GTAC 1 cut(s) 226
CviAII CATG 2 cut(s) 202, 229
CviJI RGCY 3 cut(s) 25, 69, 179
CviKI_1 RGCY 3 cut(s) 25, 69, 179
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 36
DpnI GATC 2 cut(s) 110, 252
DpnII GATC 2 cut(s) 108, 250
DrdI GACNNNNNNGTC 1 cut(s) 314
DseDI GACNNNNNNGTC 1 cut(s) 314
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 316
Eco88I CYCGRG 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 49
FaeI CATG 2 cut(s) 205, 232
FaiI YATR 4 cut(s) 56, 66, 203, 230
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FatI CATG 2 cut(s) 201, 228
FokI GGATG 1 cut(s) 56
GlaI GCGC 1 cut(s) 264
GsaI CCCAGC 1 cut(s) 73
HapII CCGG 1 cut(s) 305
HhaI GCGC 1 cut(s) 265
Hin1I GRCGYC 1 cut(s) 196
Hin1II CATG 2 cut(s) 205, 232
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HinfI GANTC 1 cut(s) 293
HpaII CCGG 1 cut(s) 305
Hpy188I TCNGA 1 cut(s) 218
Hpy188III TCNNGA 4 cut(s) 35, 187, 238, 290
Hpy99I CGWCG 1 cut(s) 198
HpyAV CCTTC 1 cut(s) 307
HpyCH4IV ACGT 2 cut(s) 196, 309
HpyCH4V TGCA 3 cut(s) 47, 143, 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 271
HpyF3I CTNAG 1 cut(s) 36
HpySE526I ACGT 2 cut(s) 196, 309
Hsp92I GRCGYC 1 cut(s) 196
Hsp92II CATG 2 cut(s) 205, 232
HspAI GCGC 1 cut(s) 263
Kzo9I GATC 2 cut(s) 108, 250
LguI GCTCTTC 1 cut(s) 264
LpnPI CCDG 4 cut(s) 36, 48, 55, 318
LweI GCATC 4 cut(s) 34, 56, 130, 180
MaeII ACGT 2 cut(s) 196, 309
MaeIII GTNAC 2 cut(s) 73, 197
MalI GATC 2 cut(s) 110, 252
MboI GATC 2 cut(s) 108, 250
MboII GAAGA 2 cut(s) 140, 281
MflI RGATCY 2 cut(s) 108, 250
MhlI GDGCHC 1 cut(s) 175
MluCI AATT 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 2 cut(s) 308, 311
Mph1103I ATGCAT 1 cut(s) 49
MslI CAYNNNNRTG 1 cut(s) 188
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 1 cut(s) 305
Mva1269I GAATGC 1 cut(s) 154
MwoI GCNNNNNNNGC 1 cut(s) 271
NciI CCSGG 1 cut(s) 305
NdeII GATC 2 cut(s) 108, 250
NlaIII CATG 2 cut(s) 205, 232
NmuCI GTSAC 1 cut(s) 197
NsiI ATGCAT 1 cut(s) 49
NspI RCATGY 1 cut(s) 232
PciI ACATGT 1 cut(s) 228
PciSI GCTCTTC 1 cut(s) 264
PctI GAATGC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 293
PfoI TCCNGGA 1 cut(s) 303
PscI ACATGT 1 cut(s) 228
PspFI CCCAGC 1 cut(s) 69
PspPI GGNCC 1 cut(s) 316
PsuI RGATCY 2 cut(s) 108, 250
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 188
SapI GCTCTTC 1 cut(s) 264
Sau3AI GATC 2 cut(s) 108, 250
Sau96I GGNCC 1 cut(s) 316
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 1 cut(s) 175
SetI ASST 6 cut(s) 27, 71, 181, 199, 312, 318
SfaNI GCATC 4 cut(s) 34, 56, 130, 180
SinI GGWCC 1 cut(s) 316
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
Sse9I AATT 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 303
TaiI ACGT 2 cut(s) 199, 312
TasI AATT 1 cut(s) 146
TatI WGTACW 1 cut(s) 225
TfiI GAWTC 1 cut(s) 293
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 197
TspRI CASTG 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 316
XceI RCATGY 1 cut(s) 232
ZraI GACGTC 1 cut(s) 197
Zsp2I ATGCAT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.