Rmu_sc0006997.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006997.1
OG0031334
Physical Location & Seq
Forward (+)
54440 .. 55333
894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006997.1_g000017.1.cds

Sequence Viewer

Length: 447 bp
atgcaagctgttgcgcatcaccgagccatccaaggcccctcatcgaccccaaaatgcatagattaccatagttgggtaactgatgttgagaataatctcactgccaaagggatcttgcccacaatcaaagaagctggttttgatgcacaatttgtgcattctacaaccaaaagtgctcaagctctcatcttgatgcgacgtcacatggataaatcactccgaatggagtacatgtcgatcaagaacccgagagatctgtgggttgcgcttgaagagcgttttggaaacattcaagattccctcctccctgacgtgaaggtccaatgggacaatctgcgcttccccaacttcaagtccttctctgaatataattcagaagctctacgcctcaaatccatgttggggttctgtggacaagtcatcacagatcaagagctaattaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

148

Amino Acids

16.97

Weight (kDa)

6.96

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031334)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005104.1_g000007 Rmu_sc0006997.1_g000017

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
AatII GACGTC 1 cut(s) 202
Acc16I TGCGCA 1 cut(s) 15
AclWI GGATC 1 cut(s) 119
AcyI GRCGYC 1 cut(s) 199
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 2 cut(s) 73, 402
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 3 cut(s) 272, 293, 352
AjiI CACGTC 1 cut(s) 313
AjuI GAANNNNNNNTTGG 2 cut(s) 264, 296
AluBI AGCT 5 cut(s) 8, 134, 182, 380, 436
AluI AGCT 5 cut(s) 8, 134, 182, 380, 436
Alw21I GWGCWC 1 cut(s) 178
AlwI GGATC 1 cut(s) 119
Ama87I CYCGRG 1 cut(s) 247
AoxI GGCC 1 cut(s) 34
AseI ATTAAT 1 cut(s) 441
AspLEI GCGC 3 cut(s) 16, 268, 339
AspS9I GGNCC 2 cut(s) 35, 319
AsuHPI GGTGA 1 cut(s) 11
AvaI CYCGRG 1 cut(s) 247
AvaII GGWCC 1 cut(s) 319
Bbv12I GWGCWC 1 cut(s) 178
BccI CCATC 1 cut(s) 35
BglII AGATCT 1 cut(s) 253
Bme18I GGWCC 1 cut(s) 319
BmeT110I CYCGRG 1 cut(s) 247
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 2 cut(s) 35, 319
BmiI GGNNCC 1 cut(s) 37
BmsI GCATC 3 cut(s) 25, 133, 183
BpuEI CTTGAG 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 402
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 1 cut(s) 27
BseLI CCNNNNNNNGG 2 cut(s) 73, 402
BseRI GAGGAG 1 cut(s) 293
BshFI GGCC 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 178
BsiHKCI CYCGRG 1 cut(s) 247
BslFI GGGAC 1 cut(s) 341
BslI CCNNNNNNNGG 2 cut(s) 73, 402
BsmFI GGGAC 1 cut(s) 341
BsmI GAATGC 1 cut(s) 157
BsnI GGCC 1 cut(s) 36
BsoBI CYCGRG 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 4 cut(s) 111, 237, 253, 427
BspANI GGCC 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 1 cut(s) 119
BspQI GCTCTTC 1 cut(s) 267
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 4 cut(s) 111, 237, 253, 427
BssNI GRCGYC 1 cut(s) 199
BssT1I CCWWGG 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 267
BstACI GRCGYC 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 6
BstF5I GGATG 1 cut(s) 27
BstHHI GCGC 3 cut(s) 16, 268, 339
BstKTI GATC 4 cut(s) 114, 240, 256, 430
BstMBI GATC 4 cut(s) 111, 237, 253, 427
BstMWI GCNNNNNNNGC 1 cut(s) 274
BstNSI RCATGY 1 cut(s) 235
BstX2I RGATCY 2 cut(s) 111, 253
BstYI RGATCY 2 cut(s) 111, 253
BsuRI GGCC 1 cut(s) 36
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 1 cut(s) 27
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 3 cut(s) 16, 268, 339
Cfr13I GGNCC 2 cut(s) 35, 319
Csp6I GTAC 1 cut(s) 229
CviAII CATG 3 cut(s) 205, 232, 397
CviJI RGCY 7 cut(s) 8, 26, 36, 134, 182, 380, 436
CviKI_1 RGCY 7 cut(s) 8, 26, 36, 134, 182, 380, 436
CviQI GTAC 1 cut(s) 229
DpnI GATC 4 cut(s) 113, 239, 255, 429
DpnII GATC 4 cut(s) 111, 237, 253, 427
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 319
Eco88I CYCGRG 1 cut(s) 247
EcoO109I RGGNCCY 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 31
EcoT22I ATGCAT 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 3 cut(s) 208, 235, 400
FaiI YATR 6 cut(s) 59, 69, 206, 233, 369, 398
FaqI GGGAC 1 cut(s) 341
FatI CATG 3 cut(s) 204, 231, 396
FokI GGATG 1 cut(s) 14
FspI TGCGCA 1 cut(s) 15
GlaI GCGC 3 cut(s) 15, 267, 338
HaeIII GGCC 1 cut(s) 36
HhaI GCGC 3 cut(s) 16, 268, 339
Hin1I GRCGYC 1 cut(s) 199
Hin1II CATG 3 cut(s) 208, 235, 400
Hin6I GCGC 3 cut(s) 14, 266, 337
HinP1I GCGC 3 cut(s) 14, 266, 337
HinfI GANTC 1 cut(s) 296
HphI GGTGA 1 cut(s) 11
Hpy166II GTNNAC 1 cut(s) 413
Hpy188I TCNGA 3 cut(s) 221, 364, 376
Hpy188III TCNNGA 4 cut(s) 190, 241, 293, 431
Hpy8I GTNNAC 1 cut(s) 413
Hpy99I CGWCG 1 cut(s) 201
HpyAV CCTTC 2 cut(s) 310, 367
HpyCH4IV ACGT 2 cut(s) 199, 312
HpyCH4V TGCA 4 cut(s) 4, 57, 146, 157
HpyF10VI GCNNNNNNNGC 1 cut(s) 274
HpySE526I ACGT 2 cut(s) 199, 312
Hsp92I GRCGYC 1 cut(s) 199
Hsp92II CATG 3 cut(s) 208, 235, 400
HspAI GCGC 3 cut(s) 14, 266, 337
Kzo9I GATC 4 cut(s) 111, 237, 253, 427
LguI GCTCTTC 1 cut(s) 267
LpnPI CCDG 2 cut(s) 120, 321
LweI GCATC 3 cut(s) 25, 133, 183
MaeII ACGT 2 cut(s) 199, 312
MaeIII GTNAC 2 cut(s) 76, 200
MalI GATC 4 cut(s) 113, 239, 255, 429
MboI GATC 4 cut(s) 111, 237, 253, 427
MboII GAAGA 1 cut(s) 284
MflI RGATCY 2 cut(s) 111, 253
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 4 cut(s) 149, 370, 438, 442
MnlI CCTC 4 cut(s) 49, 311, 314, 398
Mph1103I ATGCAT 1 cut(s) 59
MseI TTAA 1 cut(s) 441
MslI CAYNNNNRTG 1 cut(s) 191
Mva1269I GAATGC 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 274
NdeII GATC 4 cut(s) 111, 237, 253, 427
NlaIII CATG 3 cut(s) 208, 235, 400
NlaIV GGNNCC 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 200
NsbI TGCGCA 1 cut(s) 15
NsiI ATGCAT 1 cut(s) 59
NspI RCATGY 1 cut(s) 235
PciI ACATGT 1 cut(s) 231
PciSI GCTCTTC 1 cut(s) 267
PctI GAATGC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 296
PscI ACATGT 1 cut(s) 231
PshBI ATTAAT 1 cut(s) 441
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 2 cut(s) 35, 319
PsuI RGATCY 2 cut(s) 111, 253
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
RseI CAYNNNNRTG 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 441
Sau3AI GATC 4 cut(s) 111, 237, 253, 427
Sau96I GGNCC 2 cut(s) 35, 319
SduI GDGCHC 1 cut(s) 178
SetI ASST 8 cut(s) 10, 136, 184, 202, 315, 321, 382, 438
SfaNI GCATC 3 cut(s) 25, 133, 183
SinI GGWCC 1 cut(s) 319
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
Sse9I AATT 4 cut(s) 149, 370, 438, 442
StyI CCWWGG 1 cut(s) 31
TaiI ACGT 2 cut(s) 202, 315
TaqI TCGA 2 cut(s) 44, 236
TasI AATT 4 cut(s) 149, 370, 438, 442
TatI WGTACW 1 cut(s) 228
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 200
TspRI CASTG 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 319
VspI ATTAAT 1 cut(s) 441
XceI RCATGY 1 cut(s) 235
ZraI GACGTC 1 cut(s) 200
Zsp2I ATGCAT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.