Rmu_sc0005117.1_g000016

UDP-glycosyltransferase 89A2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005117.1
OG0031335
Physical Location & Seq
Reverse (-)
102386 .. 103327
942 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 876 bp
atgtcgatctcggccggcgataacagccattctcagggaactggatctcacatggtcttcccttaccctgcacaagggcacatgctaccgctcctcgaaataacccaccacgtagccctccccggcctcaccataactgtcgtggtcacacccaagaacctcccaaccctaacaccactcctctcaacccacccctccatccaaacctgccacggcaacatgtacgtcatcaactcccttgccgacctccacgagcccgttatccagtggttgaactcccacgctaactcgcctgtggccatcatttccgacttctttctcccctaccctaaacgcctggccgacaagctcaaagttcctacaatctctttctactcttgtggggcctttgtggcctctgttctcgactactgttggaaaaatctatatctcgtttgctcctcatcggcggctgttattgattttcccgatgttccaagatcatcgtcctttaaaaagaagcatgtttcgtccgtggtccggctgcacagagattcggatcccgagtccgagctatttagggtttccatgcttgaaaattgttgggcactcgttttcaacagctttcaagacttggagagcgacttatttcgaccacatgatgaaaattatgggcacaaccgggtttacgggattggcccattaaaactaattattccgggatcggacagtatgcaacaagatcgacccgttgcagactacgtcatctcggatccaggagttgacatgctggagtggcttaatgagcctactccagagatggcgacccaaactgttgtgcatcgcgctgcatgtggaaagttctcaccattttttgatgaaaattatatgtactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

291

Amino Acids

32.48

Weight (kDa)

5.71

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031335)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005117.1_g000016
rosa_roxburghii Rroxscaffold_5G00378290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 215
AccBSI CCGCTC 1 cut(s) 91
AccII CGCG 1 cut(s) 825
AciI CCGC 2 cut(s) 89, 449
AclWI GGATC 6 cut(s) 52, 533, 546, 709, 746, 759
AcoI YGGCCR 3 cut(s) 12, 297, 339
AfaI GTAC 2 cut(s) 224, 872
AfiI CCNNNNNNNGG 3 cut(s) 34, 74, 519
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 4 cut(s) 274, 575, 598, 608
AjnI CCWGG 2 cut(s) 336, 754
AluBI AGCT 3 cut(s) 349, 553, 603
AluI AGCT 3 cut(s) 349, 553, 603
AlwI GGATC 6 cut(s) 52, 533, 546, 709, 746, 759
Ama87I CYCGRG 1 cut(s) 542
AoxI GGCC 7 cut(s) 12, 124, 297, 339, 384, 393, 676
ApeKI GCWGC 2 cut(s) 523, 827
AspLEI GCGC 1 cut(s) 827
AspS9I GGNCC 3 cut(s) 384, 517, 677
AsuC2I CCSGG 3 cut(s) 123, 662, 699
AsuHPI GGTGA 2 cut(s) 121, 837
AvaI CYCGRG 1 cut(s) 542
AvaII GGWCC 1 cut(s) 517
BaeGI GKGCMC 3 cut(s) 81, 589, 657
BalI TGGCCA 1 cut(s) 299
BamHI GGATCC 2 cut(s) 538, 751
BanII GRGCYC 1 cut(s) 258
BauI CACGAG 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 49
BbvI GCAGC 2 cut(s) 510, 814
BccI CCATC 3 cut(s) 206, 308, 793
BceAI ACGGC 1 cut(s) 229
BcgI CGANNNNNNTGC 2 cut(s) 704, 738
BciT130I CCWGG 2 cut(s) 338, 756
BcnI CCSGG 3 cut(s) 123, 662, 699
BfuAI ACCTGC 1 cut(s) 215
BglI GCCNNNNNGGC 1 cut(s) 392
BisI GCNGC 3 cut(s) 450, 524, 828
BlsI GCNGC 3 cut(s) 451, 525, 829
Bme1390I CCNGG 5 cut(s) 123, 338, 662, 699, 756
Bme18I GGWCC 1 cut(s) 517
BmeT110I CYCGRG 1 cut(s) 542
BmgT120I GGNCC 3 cut(s) 384, 517, 677
BmiI GGNNCC 3 cut(s) 385, 540, 753
BmrFI CCNGG 5 cut(s) 123, 338, 662, 699, 756
BmsI GCATC 1 cut(s) 829
BpiI GAAGAC 1 cut(s) 49
BpmI CTGGAG 2 cut(s) 777, 791
BpuMI CCSGG 3 cut(s) 123, 662, 699
BsaAI YACGTR 1 cut(s) 112
BsaBI GATNNNNATC 1 cut(s) 537
BsaJI CCNNGG 3 cut(s) 121, 211, 513
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 74, 519
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 2 cut(s) 46, 265
Bse8I GATNNNNATC 1 cut(s) 537
BseBI CCWGG 2 cut(s) 338, 756
BseDI CCNNGG 3 cut(s) 121, 211, 513
BseGI GGATG 1 cut(s) 198
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 3 cut(s) 34, 74, 519
BseMII CTCAG 1 cut(s) 47
BseNI ACTGG 2 cut(s) 46, 265
BseRI GAGGAG 3 cut(s) 83, 170, 430
BseSI GKGCMC 3 cut(s) 81, 589, 657
BseX3I CGGCCG 1 cut(s) 12
BseXI GCAGC 2 cut(s) 510, 814
BsgI GTGCAG 2 cut(s) 54, 509
Bsh1236I CGCG 1 cut(s) 825
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 7 cut(s) 14, 126, 299, 341, 386, 395, 678
BsiEI CGRYCG 1 cut(s) 15
BsiHKCI CYCGRG 1 cut(s) 542
BsiSI CCGG 5 cut(s) 15, 123, 520, 661, 698
BslI CCNNNNNNNGG 3 cut(s) 34, 74, 519
BsnI GGCC 7 cut(s) 14, 126, 299, 341, 386, 395, 678
BsoBI CYCGRG 1 cut(s) 542
Bsp1286I GDGCHC 4 cut(s) 81, 258, 589, 657
Bsp143I GATC 7 cut(s) 6, 44, 479, 538, 701, 721, 751
BspACI CCGC 2 cut(s) 89, 449
BspANI GGCC 7 cut(s) 14, 126, 299, 341, 386, 395, 678
BspCNI CTCAG 1 cut(s) 46
BspFNI CGCG 1 cut(s) 825
BspLI GGNNCC 3 cut(s) 385, 540, 753
BspMI ACCTGC 1 cut(s) 215
BspPI GGATC 6 cut(s) 52, 533, 546, 709, 746, 759
BsrBI CCGCTC 1 cut(s) 91
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 2 cut(s) 46, 265
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 3 cut(s) 121, 211, 513
BssMI GATC 7 cut(s) 6, 44, 479, 538, 701, 721, 751
BssSI CACGAG 1 cut(s) 251
Bst2BI CACGAG 1 cut(s) 251
Bst2UI CCWGG 2 cut(s) 338, 756
Bst4CI ACNGT 4 cut(s) 139, 413, 710, 814
BstBAI YACGTR 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 33
BstDSI CCRYGG 2 cut(s) 211, 513
BstENI CCTNNNNNAGG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 198
BstFNI CGCG 1 cut(s) 825
BstHHI GCGC 1 cut(s) 827
BstKTI GATC 7 cut(s) 9, 47, 482, 541, 704, 724, 754
BstMBI GATC 7 cut(s) 6, 44, 479, 538, 701, 721, 751
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 4 cut(s) 24, 392, 775, 784
BstNI CCWGG 2 cut(s) 338, 756
BstNSI RCATGY 5 cut(s) 85, 223, 506, 769, 834
BstSCI CCNGG 5 cut(s) 121, 336, 660, 697, 754
BstSLI GKGCMC 3 cut(s) 81, 589, 657
BstUI CGCG 1 cut(s) 825
BstV1I GCAGC 2 cut(s) 510, 814
BstV2I GAAGAC 1 cut(s) 49
BstX2I RGATCY 3 cut(s) 44, 538, 751
BstYI RGATCY 3 cut(s) 44, 538, 751
BstZI CGGCCG 1 cut(s) 12
BsuRI GGCC 7 cut(s) 14, 126, 299, 341, 386, 395, 678
BtgI CCRYGG 2 cut(s) 211, 513
BtgZI GCGATG 1 cut(s) 806
BtsCI GGATG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 272
BveI ACCTGC 1 cut(s) 215
Cac8I GCNNGC 1 cut(s) 16
CfoI GCGC 1 cut(s) 827
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 3 cut(s) 384, 517, 677
Csp6I GTAC 2 cut(s) 223, 871
CviAII CATG 8 cut(s) 52, 82, 220, 503, 568, 638, 766, 831
CviQI GTAC 2 cut(s) 223, 871
DdeI CTNAG 1 cut(s) 33
DpnI GATC 7 cut(s) 8, 46, 481, 540, 703, 723, 753
DpnII GATC 7 cut(s) 6, 44, 479, 538, 701, 721, 751
DraI TTTAAA 1 cut(s) 493
EaeI YGGCCR 3 cut(s) 12, 297, 339
EagI CGGCCG 1 cut(s) 12
EclXI CGGCCG 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 517
Eco52I CGGCCG 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 542
EcoNI CCTNNNNNAGG 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 384
EcoRII CCWGG 2 cut(s) 336, 754
EcoT38I GRGCYC 1 cut(s) 258
FaeI CATG 8 cut(s) 55, 85, 223, 506, 571, 641, 769, 834
FatI CATG 8 cut(s) 51, 81, 219, 502, 567, 637, 765, 830
Fnu4HI GCNGC 3 cut(s) 450, 524, 828
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 3 cut(s) 450, 524, 828
GlaI GCGC 1 cut(s) 826
GluI GCNGC 3 cut(s) 450, 524, 828
GsuI CTGGAG 2 cut(s) 777, 791
HaeIII GGCC 7 cut(s) 14, 126, 299, 341, 386, 395, 678
HapII CCGG 5 cut(s) 15, 123, 520, 661, 698
HhaI GCGC 1 cut(s) 827
Hin1II CATG 8 cut(s) 55, 85, 223, 506, 571, 641, 769, 834
Hin6I GCGC 1 cut(s) 825
HinP1I GCGC 1 cut(s) 825
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HinfI GANTC 2 cut(s) 533, 545
HpaII CCGG 5 cut(s) 15, 123, 520, 661, 698
HphI GGTGA 2 cut(s) 121, 837
Hpy166II GTNNAC 2 cut(s) 667, 763
Hpy188I TCNGA 5 cut(s) 310, 538, 550, 706, 751
Hpy188III TCNNGA 5 cut(s) 404, 467, 542, 608, 794
Hpy8I GTNNAC 2 cut(s) 667, 763
HpyCH4III ACNGT 4 cut(s) 139, 413, 710, 814
HpyCH4IV ACGT 3 cut(s) 111, 225, 741
HpyCH4V TGCA 6 cut(s) 71, 526, 715, 734, 820, 830
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 392, 775, 784
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 3 cut(s) 111, 225, 741
Hsp92II CATG 8 cut(s) 55, 85, 223, 506, 571, 641, 769, 834
HspAI GCGC 1 cut(s) 825
KroI GCCGGC 1 cut(s) 14
KroNI GCCGGC 1 cut(s) 16
Kzo9I GATC 7 cut(s) 6, 44, 479, 538, 701, 721, 751
LmnI GCTCC 2 cut(s) 96, 443
Lsp1109I GCAGC 2 cut(s) 510, 814
LweI GCATC 1 cut(s) 829
MaeII ACGT 3 cut(s) 111, 225, 741
MaeIII GTNAC 1 cut(s) 145
MalI GATC 7 cut(s) 8, 46, 481, 540, 703, 723, 753
MbiI CCGCTC 1 cut(s) 91
MboI GATC 7 cut(s) 6, 44, 479, 538, 701, 721, 751
MboII GAAGA 1 cut(s) 49
MflI RGATCY 3 cut(s) 44, 538, 751
MhlI GDGCHC 4 cut(s) 81, 258, 589, 657
MlsI TGGCCA 1 cut(s) 299
MluCI AATT 4 cut(s) 577, 646, 690, 862
MluNI TGGCCA 1 cut(s) 299
MlyI GAGTC 1 cut(s) 554
MmeI TCCRAC 2 cut(s) 333, 395
MnlI CCTC 9 cut(s) 104, 128, 137, 170, 191, 205, 257, 406, 451
Mox20I TGGCCA 1 cut(s) 299
MroNI GCCGGC 1 cut(s) 14
MscI TGGCCA 1 cut(s) 299
MseI TTAA 3 cut(s) 492, 683, 780
Msp20I TGGCCA 1 cut(s) 299
MspI CCGG 5 cut(s) 15, 123, 520, 661, 698
MspR9I CCNGG 5 cut(s) 123, 338, 662, 699, 756
MvaI CCWGG 2 cut(s) 338, 756
MvnI CGCG 1 cut(s) 825
MwoI GCNNNNNNNGC 4 cut(s) 24, 392, 775, 784
NaeI GCCGGC 1 cut(s) 16
NciI CCSGG 3 cut(s) 123, 662, 699
NdeII GATC 7 cut(s) 6, 44, 479, 538, 701, 721, 751
NgoMIV GCCGGC 1 cut(s) 14
NlaIII CATG 8 cut(s) 55, 85, 223, 506, 571, 641, 769, 834
NlaIV GGNNCC 3 cut(s) 385, 540, 753
NmuCI GTSAC 1 cut(s) 145
NspI RCATGY 5 cut(s) 85, 223, 506, 769, 834
PciI ACATGT 1 cut(s) 219
PdiI GCCGGC 1 cut(s) 16
PfeI GAWTC 1 cut(s) 533
PflFI GACNNNGTC 1 cut(s) 740
PfoI TCCNGGA 2 cut(s) 697, 754
PkrI GCNGC 3 cut(s) 451, 525, 829
PleI GAGTC 1 cut(s) 553
PpsI GAGTC 1 cut(s) 553
Ppu21I YACGTR 1 cut(s) 112
PscI ACATGT 1 cut(s) 219
Psp6I CCWGG 2 cut(s) 336, 754
PspGI CCWGG 2 cut(s) 336, 754
PspN4I GGNNCC 3 cut(s) 385, 540, 753
PspPI GGNCC 3 cut(s) 384, 517, 677
PsuI RGATCY 3 cut(s) 44, 538, 751
PsyI GACNNNGTC 1 cut(s) 740
RsaI GTAC 2 cut(s) 224, 872
RsaNI GTAC 2 cut(s) 223, 871
SaqAI TTAA 3 cut(s) 492, 683, 780
SatI GCNGC 3 cut(s) 450, 524, 828
Sau3AI GATC 7 cut(s) 6, 44, 479, 538, 701, 721, 751
Sau96I GGNCC 3 cut(s) 384, 517, 677
SchI GAGTC 1 cut(s) 554
ScrFI CCNGG 5 cut(s) 123, 338, 662, 699, 756
SduI GDGCHC 4 cut(s) 81, 258, 589, 657
SetI ASST 9 cut(s) 114, 162, 209, 228, 249, 351, 555, 605, 744
SfaNI GCATC 1 cut(s) 829
SfiI GGCCNNNNNGGCC 1 cut(s) 392
SinI GGWCC 1 cut(s) 517
Sse9I AATT 4 cut(s) 577, 646, 690, 862
SsiI CCGC 2 cut(s) 89, 449
StyD4I CCNGG 5 cut(s) 121, 336, 660, 697, 754
TaaI ACNGT 4 cut(s) 139, 413, 710, 814
TaiI ACGT 3 cut(s) 114, 228, 744
TaqI TCGA 5 cut(s) 5, 96, 405, 631, 724
TasI AATT 4 cut(s) 577, 646, 690, 862
TatI WGTACW 1 cut(s) 870
TauI GCSGC 1 cut(s) 452
TfiI GAWTC 1 cut(s) 533
Tru1I TTAA 3 cut(s) 492, 683, 780
Tru9I TTAA 3 cut(s) 492, 683, 780
TscAI CASTG 1 cut(s) 272
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 2 cut(s) 523, 827
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 657, 873
TspGWI ACGGA 1 cut(s) 502
TspRI CASTG 1 cut(s) 272
Tth111I GACNNNGTC 1 cut(s) 740
VpaK11BI GGWCC 1 cut(s) 517
XagI CCTNNNNNAGG 1 cut(s) 72
XceI RCATGY 5 cut(s) 85, 223, 506, 769, 834
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.