Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0031335

Physical Location & Seq

Genomic Coordinates Forward (+)

58775540 .. 58776073

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00378290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTACGTCATCAACGCCCTTGCCGACCTCCACGAGCCCGTTATCCAGTTGTTTAACTCCCACGCTAACCCACCTGTGGCCATCATTTCCGACTCCCTTCTCCCCTACCATAAACGCCTGGCCGACAAGCTCAAAGTTCCTACAATCTCTTTCTACGCTTGTGGGGCCTTTGTGGCCTCTGTTCTCGACTACTGTTGGAAATATCTGTATCTCGTTCGCTCCTCATCGGCGGCTGTTATTGATTTTCCCGATGTTCCAAGATCACCGTCCTTTAAAAAGAAGCATGTTCCGTCCATGGTCCGGTTGCACAGAGATTCGGATCCCGAGTCCGAGCTGTTGAGGGCTTCCATGGTTGAAAATAGTGAGAGTTGGGCATTCATTTTCAACGGCTTCAAAGACTTGGAGAGCAAGTATTTCGACCGCATGATGAAAATAATGGGCCACAACGGGGTTTATGGGGTTGGCCCATTAAGTCTAATTGCTCCGGAATCAGGGCCGTCTGCAACGAGATCCGATCCCGGATTCAGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

177

Amino Acids

19.82

Weight (kDa)

7.75

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031335)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005117.1_g000016
rosa_roxburghii	Rroxscaffold_5G00378290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	484
AciI	CCGC	2 cut(s)	230, 421
AclWI	GGATC	4 cut(s)	314, 327, 504, 509
AcoI	YGGCCR	2 cut(s)	78, 120
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	5 cut(s)	76, 300, 448, 491, 525
AgsI	TTSAA	3 cut(s)	356, 385, 394
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	2 cut(s)	130, 334
AluI	AGCT	2 cut(s)	130, 334
AlwI	GGATC	4 cut(s)	314, 327, 504, 509
Ama87I	CYCGRG	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	484
AoxI	GGCC	7 cut(s)	78, 120, 165, 174, 439, 463, 494
AspS9I	GGNCC	5 cut(s)	165, 298, 439, 464, 494
AsuC2I	CCSGG	1 cut(s)	519
AsuHPI	GGTGA	1 cut(s)	255
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	298
BalI	TGGCCA	1 cut(s)	80
BamHI	GGATCC	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	39
BauI	CACGAG	1 cut(s)	32
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	2 cut(s)	403, 481
BcgI	CGANNNNNNTGC	2 cut(s)	397, 431
BciT130I	CCWGG	1 cut(s)	119
BcnI	CCSGG	1 cut(s)	519
BglI	GCCNNNNNGGC	1 cut(s)	173
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	2 cut(s)	119, 519
Bme18I	GGWCC	1 cut(s)	298
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	5 cut(s)	165, 298, 439, 464, 494
BmiI	GGNNCC	2 cut(s)	166, 321
BmrFI	CCNGG	2 cut(s)	119, 519
BpuMI	CCSGG	1 cut(s)	519
BsaBI	GATNNNNATC	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	294, 348
BsaWI	WCCGGW	2 cut(s)	300, 484
BsaXI	ACNNNNNCTCC	2 cut(s)	395, 425
Bsc4I	CCNNNNNNNGG	5 cut(s)	76, 300, 448, 491, 525
Bse1I	ACTGG	1 cut(s)	46
Bse8I	GATNNNNATC	1 cut(s)	318
BseAI	TCCGGA	1 cut(s)	484
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	2 cut(s)	294, 348
BseJI	GATNNNNATC	1 cut(s)	318
BseLI	CCNNNNNNNGG	5 cut(s)	76, 300, 448, 491, 525
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	211
Bsh1285I	CGRYCG	1 cut(s)	421
BshFI	GGCC	7 cut(s)	80, 122, 167, 176, 441, 465, 496
BsiEI	CGRYCG	1 cut(s)	421
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	3 cut(s)	301, 485, 519
BslI	CCNNNNNNNGG	5 cut(s)	76, 300, 448, 491, 525
BsmI	GAATGC	1 cut(s)	374
BsnI	GGCC	7 cut(s)	80, 122, 167, 176, 441, 465, 496
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp13I	TCCGGA	1 cut(s)	484
Bsp143I	GATC	4 cut(s)	260, 319, 509, 514
Bsp19I	CCATGG	2 cut(s)	294, 348
BspACI	CCGC	2 cut(s)	230, 421
BspANI	GGCC	7 cut(s)	80, 122, 167, 176, 441, 465, 496
BspEI	TCCGGA	1 cut(s)	484
BspLI	GGNNCC	2 cut(s)	166, 321
BspPI	GGATC	4 cut(s)	314, 327, 504, 509
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	2 cut(s)	294, 348
BssMI	GATC	4 cut(s)	260, 319, 509, 514
BssSI	CACGAG	1 cut(s)	32
BssT1I	CCWWGG	2 cut(s)	294, 348
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	2 cut(s)	194, 267
BstDSI	CCRYGG	2 cut(s)	294, 348
BstKTI	GATC	4 cut(s)	263, 322, 512, 517
BstMBI	GATC	4 cut(s)	260, 319, 509, 514
BstMCI	CGRYCG	1 cut(s)	421
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 173
BstNI	CCWGG	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	2 cut(s)	117, 517
BstX2I	RGATCY	2 cut(s)	319, 509
BstYI	RGATCY	2 cut(s)	319, 509
BsuRI	GGCC	7 cut(s)	80, 122, 167, 176, 441, 465, 496
BtgI	CCRYGG	2 cut(s)	294, 348
Cfr13I	GGNCC	5 cut(s)	165, 298, 439, 464, 494
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	4 cut(s)	284, 295, 349, 424
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	4 cut(s)	262, 321, 511, 516
DpnII	GATC	4 cut(s)	260, 319, 509, 514
DraI	TTTAAA	1 cut(s)	274
EaeI	YGGCCR	2 cut(s)	78, 120
Eco130I	CCWWGG	2 cut(s)	294, 348
Eco24I	GRGCYC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	298
Eco88I	CYCGRG	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	2 cut(s)	294, 348
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	2 cut(s)	294, 348
FaeI	CATG	4 cut(s)	287, 298, 352, 427
FaiI	YATR	6 cut(s)	111, 285, 296, 350, 425, 456
FatI	CATG	4 cut(s)	283, 294, 348, 423
Fnu4HI	GCNGC	1 cut(s)	231
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	231
GluI	GCNGC	1 cut(s)	231
HaeIII	GGCC	7 cut(s)	80, 122, 167, 176, 441, 465, 496
HapII	CCGG	3 cut(s)	301, 485, 519
Hin1II	CATG	4 cut(s)	287, 298, 352, 427
HinfI	GANTC	5 cut(s)	92, 314, 326, 488, 522
HpaII	CCGG	3 cut(s)	301, 485, 519
HphI	GGTGA	1 cut(s)	255
Hpy188I	TCNGA	4 cut(s)	91, 319, 331, 514
Hpy188III	TCNNGA	4 cut(s)	185, 248, 323, 485
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	2 cut(s)	194, 267
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	2 cut(s)	307, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 173
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	4 cut(s)	287, 298, 352, 427
Kpn2I	TCCGGA	1 cut(s)	484
Kzo9I	GATC	4 cut(s)	260, 319, 509, 514
LmnI	GCTCC	2 cut(s)	224, 487
LpnPI	CCDG	8 cut(s)	59, 87, 104, 131, 314, 477, 498, 511
MaeII	ACGT	1 cut(s)	6
MalI	GATC	4 cut(s)	262, 321, 511, 516
MboI	GATC	4 cut(s)	260, 319, 509, 514
MflI	RGATCY	2 cut(s)	319, 509
MhlI	GDGCHC	1 cut(s)	39
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	1 cut(s)	477
MluNI	TGGCCA	1 cut(s)	80
MlyI	GAGTC	2 cut(s)	86, 335
MmeI	TCCRAC	2 cut(s)	114, 176
MnlI	CCTC	4 cut(s)	38, 187, 232, 333
Mox20I	TGGCCA	1 cut(s)	80
MroI	TCCGGA	1 cut(s)	484
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	3 cut(s)	54, 273, 470
Msp20I	TGGCCA	1 cut(s)	80
MspI	CCGG	3 cut(s)	301, 485, 519
MspR9I	CCNGG	2 cut(s)	119, 519
Mva1269I	GAATGC	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	164, 173
NciI	CCSGG	1 cut(s)	519
NcoI	CCATGG	2 cut(s)	294, 348
NdeII	GATC	4 cut(s)	260, 319, 509, 514
NlaIII	CATG	4 cut(s)	287, 298, 352, 427
NlaIV	GGNNCC	2 cut(s)	166, 321
NspI	RCATGY	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PctI	GAATGC	1 cut(s)	374
PfeI	GAWTC	3 cut(s)	314, 488, 522
PfoI	TCCNGGA	1 cut(s)	517
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	2 cut(s)	86, 334
PpsI	GAGTC	2 cut(s)	86, 334
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	166, 321
PspPI	GGNCC	5 cut(s)	165, 298, 439, 464, 494
PsuI	RGATCY	2 cut(s)	319, 509
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	3 cut(s)	54, 273, 470
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	4 cut(s)	260, 319, 509, 514
Sau96I	GGNCC	5 cut(s)	165, 298, 439, 464, 494
SchI	GAGTC	2 cut(s)	86, 335
ScrFI	CCNGG	2 cut(s)	119, 519
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	6 cut(s)	9, 30, 76, 132, 336, 530
SfiI	GGCCNNNNNGGCC	1 cut(s)	173
SinI	GGWCC	1 cut(s)	298
Sse9I	AATT	1 cut(s)	477
SsiI	CCGC	2 cut(s)	230, 421
StyD4I	CCNGG	2 cut(s)	117, 517
StyI	CCWWGG	2 cut(s)	294, 348
TaaI	ACNGT	2 cut(s)	194, 267
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	2 cut(s)	186, 417
TasI	AATT	1 cut(s)	477
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	3 cut(s)	314, 488, 522
Tru1I	TTAA	3 cut(s)	54, 273, 470
Tru9I	TTAA	3 cut(s)	54, 273, 470
TspDTI	ATGAA	2 cut(s)	367, 443
TspGWI	ACGGA	1 cut(s)	279
VpaK11BI	GGWCC	1 cut(s)	298
XceI	RCATGY	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.