Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005149.1

Orthogroup ID

OG0031338

Physical Location & Seq

Genomic Coordinates Reverse (-)

11236 .. 12099

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005149.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atgcatgatatgatgcaccaggttatcttatcaatagcttccaacagcaaagatggatttttggtaagatgcagggtgcacttggagggttggcccaatgttttgaggcaaccttacaaatccaggacactaactatcagtgaatctgagcttttattgttgtcatgcacggagaggtctgaaactatgccaccagccctaattttgaataaaattctggacctcaaggttgtagacatcaggagggctgatatgtcatcaatactattgtttattgtacttttgaaaagccttcaaacgctgcgtctggagcgttgcaatttggaaagtgtacatgttgatattggagagctacaggaactaatgatactcagcttttgtggttcttcaatggaacagttacctgctggtcttggaaagctgtcaaatctcagattgctagatgtgactaaatgtaaaagtccgcaaaggaatacagtggatgttgcttttatcccaagcttagcgaaactagaagaagtgtacatgaggaatagatgcttgcaatggggggttcaggagtcagagattgatactaactcacaactccaaaagcttctttcattaggttgtttgactgctttagaaatgattcttccaatgagaggcaatttgcagttctgcacaacatcctgccatttcatcagctccaaagatttaagatcttatttgattgctttagaaatgattcttccaatgagaggcaatctgcagttctgcacaacatcctgccatttcatcagctccaaagatttaagatctctacaacagatgtacctacctcccctatcatggctagtttgctatgtcaccaagcataaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

287

Amino Acids

32.71

Weight (kDa)

8.43

Isoelectric Point (pI)

67.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031338)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005149.1_g000002
rosa_samantha	Rh6BG261500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	412
AccI	GTMKAC	1 cut(s)	234
AciI	CCGC	1 cut(s)	464
AcsI	RAATTY	1 cut(s)	213
AfaI	GTAC	4 cut(s)	279, 333, 524, 815
AfiI	CCNNNNNNNGG	3 cut(s)	644, 740, 831
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	4 cut(s)	208, 286, 296, 390
AjnI	CCWGG	2 cut(s)	18, 122
AluBI	AGCT	9 cut(s)	38, 151, 352, 375, 421, 501, 595, 687, 783
AluI	AGCT	9 cut(s)	38, 151, 352, 375, 421, 501, 595, 687, 783
Alw21I	GWGCWC	1 cut(s)	81
Alw44I	GTGCAC	1 cut(s)	77
AoxI	GGCC	1 cut(s)	92
ApaLI	GTGCAC	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	301
ApoI	RAATTY	1 cut(s)	213
ArsI	GACNNNNNNTTYG	2 cut(s)	289, 321
Asp700I	GAANNNNTTC	2 cut(s)	630, 726
AspS9I	GGNCC	2 cut(s)	93, 220
AsuHPI	GGTGA	1 cut(s)	841
AvaII	GGWCC	1 cut(s)	220
BaeGI	GKGCMC	1 cut(s)	81
BaeI	ACNNNNGTAYC	2 cut(s)	797, 830
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	288
BccI	CCATC	1 cut(s)	47
BciT130I	CCWGG	2 cut(s)	20, 124
BfaI	CTAG	3 cut(s)	440, 512, 836
BfmI	CTRYAG	2 cut(s)	353, 749
BfuAI	ACCTGC	1 cut(s)	412
BglII	AGATCT	2 cut(s)	701, 797
BisI	GCNGC	1 cut(s)	302
BlpI	GCTNAGC	1 cut(s)	502
BlsI	GCNGC	1 cut(s)	303
Bme1390I	CCNGG	2 cut(s)	20, 124
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	2 cut(s)	93, 220
BmrFI	CCNGG	2 cut(s)	20, 124
BmsI	GCATC	3 cut(s)	3, 59, 527
BpmI	CTGGAG	1 cut(s)	329
Bpu1102I	GCTNAGC	1 cut(s)	502
BpuEI	CTTGAG	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	3 cut(s)	644, 740, 831
Bse3DI	GCAATG	1 cut(s)	551
BseBI	CCWGG	2 cut(s)	20, 124
BseGI	GGATG	3 cut(s)	487, 668, 764
BseLI	CCNNNNNNNGG	3 cut(s)	644, 740, 831
BseMI	GCAATG	1 cut(s)	551
BseMII	CTCAG	3 cut(s)	138, 385, 445
BseSI	GKGCMC	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	288
BsgI	GTGCAG	2 cut(s)	646, 742
BshFI	GGCC	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	81
BslI	CCNNNNNNNGG	3 cut(s)	644, 740, 831
BsnI	GGCC	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp1407I	TGTACA	2 cut(s)	331, 522
Bsp143I	GATC	2 cut(s)	701, 797
Bsp1720I	GCTNAGC	1 cut(s)	502
BspACI	CCGC	1 cut(s)	464
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	3 cut(s)	139, 384, 444
BspMAI	CTGCAG	1 cut(s)	753
BspMI	ACCTGC	1 cut(s)	412
BsrDI	GCAATG	1 cut(s)	551
BsrGI	TGTACA	2 cut(s)	331, 522
BssMI	GATC	2 cut(s)	701, 797
Bst2UI	CCWGG	2 cut(s)	20, 124
Bst4CI	ACNGT	2 cut(s)	399, 478
BstAUI	TGTACA	2 cut(s)	331, 522
BstC8I	GCNNGC	1 cut(s)	542
BstDEI	CTNAG	4 cut(s)	147, 371, 431, 502
BstF5I	GGATG	3 cut(s)	487, 668, 764
BstKTI	GATC	2 cut(s)	704, 800
BstMBI	GATC	2 cut(s)	701, 797
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstNI	CCWGG	2 cut(s)	20, 124
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	18, 122
BstSFI	CTRYAG	2 cut(s)	353, 749
BstSLI	GKGCMC	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	288
BstX2I	RGATCY	2 cut(s)	701, 797
BstYI	RGATCY	2 cut(s)	701, 797
BsuRI	GGCC	1 cut(s)	94
BtsCI	GGATG	3 cut(s)	487, 668, 764
BtsIMutI	CAGTG	2 cut(s)	145, 483
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	542
Cfr13I	GGNCC	2 cut(s)	93, 220
CseI	GACGC	1 cut(s)	293
CsiI	ACCWGGT	1 cut(s)	18
Csp6I	GTAC	4 cut(s)	278, 332, 523, 814
CviAII	CATG	5 cut(s)	5, 165, 335, 526, 831
CviQI	GTAC	4 cut(s)	278, 332, 523, 814
DdeI	CTNAG	4 cut(s)	147, 371, 431, 502
DpnI	GATC	2 cut(s)	703, 799
DpnII	GATC	2 cut(s)	701, 797
Eco47I	GGWCC	1 cut(s)	220
EcoRII	CCWGG	2 cut(s)	18, 122
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	5 cut(s)	8, 168, 338, 529, 834
FatI	CATG	5 cut(s)	4, 164, 334, 525, 830
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	302
FokI	GGATG	3 cut(s)	494, 655, 751
Fsp4HI	GCNGC	1 cut(s)	302
FspBI	CTAG	3 cut(s)	440, 512, 836
GluI	GCNGC	1 cut(s)	302
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	94
HgaI	GACGC	1 cut(s)	293
Hin1II	CATG	5 cut(s)	8, 168, 338, 529, 834
HindIII	AAGCTT	2 cut(s)	499, 593
HinfI	GANTC	4 cut(s)	143, 560, 631, 727
HphI	GGTGA	1 cut(s)	841
Hpy166II	GTNNAC	4 cut(s)	79, 235, 332, 523
Hpy188I	TCNGA	4 cut(s)	148, 181, 434, 565
Hpy188III	TCNNGA	4 cut(s)	218, 241, 308, 557
Hpy8I	GTNNAC	4 cut(s)	79, 235, 332, 523
HpyAV	CCTTC	1 cut(s)	302
HpyCH4III	ACNGT	2 cut(s)	399, 478
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	4 cut(s)	147, 371, 431, 502
Hsp92II	CATG	5 cut(s)	8, 168, 338, 529, 834
Kzo9I	GATC	2 cut(s)	701, 797
LmnI	GCTCC	3 cut(s)	310, 692, 788
Lsp1109I	GCAGC	1 cut(s)	288
LweI	GCATC	3 cut(s)	3, 59, 527
MabI	ACCWGGT	1 cut(s)	18
MaeI	CTAG	3 cut(s)	440, 512, 836
MaeIII	GTNAC	3 cut(s)	399, 445, 847
MalI	GATC	2 cut(s)	703, 799
MboI	GATC	2 cut(s)	701, 797
MboII	GAAGA	4 cut(s)	378, 527, 626, 722
MflI	RGATCY	2 cut(s)	701, 797
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	4 cut(s)	201, 213, 319, 649
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	9 cut(s)	79, 99, 168, 233, 237, 522, 638, 734, 831
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	630, 726
MseI	TTAA	2 cut(s)	698, 794
MspR9I	CCNGG	2 cut(s)	20, 124
MvaI	CCWGG	2 cut(s)	20, 124
MwoI	GCNNNNNNNGC	1 cut(s)	310
NdeII	GATC	2 cut(s)	701, 797
NlaIII	CATG	5 cut(s)	8, 168, 338, 529, 834
NmuCI	GTSAC	2 cut(s)	445, 847
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	338
PciI	ACATGT	1 cut(s)	334
PdmI	GAANNNNTTC	2 cut(s)	630, 726
PfeI	GAWTC	3 cut(s)	143, 631, 727
PfoI	TCCNGGA	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	303
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
PscI	ACATGT	1 cut(s)	334
Psp6I	CCWGG	2 cut(s)	18, 122
PspGI	CCWGG	2 cut(s)	18, 122
PspPI	GGNCC	2 cut(s)	93, 220
PsrI	GAACNNNNNNTAC	2 cut(s)	351, 383
PstI	CTGCAG	1 cut(s)	753
PsuI	RGATCY	2 cut(s)	701, 797
RsaI	GTAC	4 cut(s)	279, 333, 524, 815
RsaNI	GTAC	4 cut(s)	278, 332, 523, 814
SaqAI	TTAA	2 cut(s)	698, 794
SatI	GCNGC	1 cut(s)	302
Sau3AI	GATC	2 cut(s)	701, 797
Sau96I	GGNCC	2 cut(s)	93, 220
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	2 cut(s)	20, 124
SduI	GDGCHC	1 cut(s)	81
SexAI	ACCWGGT	1 cut(s)	18
SfaNI	GCATC	3 cut(s)	3, 59, 527
SfcI	CTRYAG	2 cut(s)	353, 749
SinI	GGWCC	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	4 cut(s)	201, 213, 319, 649
SsiI	CCGC	1 cut(s)	464
SspMI	CTAG	3 cut(s)	440, 512, 836
StyD4I	CCNGG	2 cut(s)	18, 122
TaaI	ACNGT	2 cut(s)	399, 478
TasI	AATT	4 cut(s)	201, 213, 319, 649
TatI	WGTACW	3 cut(s)	277, 331, 522
TfiI	GAWTC	3 cut(s)	143, 631, 727
Tru1I	TTAA	2 cut(s)	698, 794
Tru9I	TTAA	2 cut(s)	698, 794
TscAI	CASTG	2 cut(s)	145, 483
TseFI	GTSAC	2 cut(s)	445, 847
TseI	GCWGC	1 cut(s)	301
Tsp45I	GTSAC	2 cut(s)	445, 847
TspDTI	ATGAA	3 cut(s)	591, 670, 766
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	2 cut(s)	145, 483
VneI	GTGCAC	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	1 cut(s)	213
XceI	RCATGY	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	234
XmnI	GAANNNNTTC	2 cut(s)	630, 726
XspI	CTAG	3 cut(s)	440, 512, 836
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.