Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005291.1

Orthogroup ID

OG0031340

Physical Location & Seq

Genomic Coordinates Forward (+)

33964 .. 35114

Gene Structure 1151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atggcggattcgatttcatcaacctgcaatctagggtttctcgacacactcagcgaaacctccatccacgaaatcgtcgaaagctactccgccttctgcgccgccaccgaaaccctcctcaacggcgccggagacctctccgtgggcccgcaactcgtctcccacgtccaccgcctctgcagccacggcctcgagtctctcgtccgcgaccacttcctcggcgcgctcgagagaaccttcgagaaaaacggcgcctccaaattctggcggcatttcgaggcacacgacgacgtttcgatcggagagcaagtgttctacaacgccttggaggaaatctcactggaaaagcagtaccaggagaagtgcttgctgatgctggttcatgctttacagacttatggaggaagaagaagccgtgattccgatgacgtcagcccggagctctttgctaagtatcaattatcagtgtcctcggttcttatggccactcttcctcggcaatttccagagatactcaactggtattttaagggaaggttggaggaactgagtactataatggccggagacgagcctcgtggcgatgaggatgaagctgacagagatgatatggagttggatgagaaatgcagagtgtcatacaggagtggacaaatggagattgatgaatgttatccccaggggaggttctttgataataataaattggtcaacaacatagggcgggttgtacatgatttgaggagtcttggatttacatctatgactgaagatgcatatgcatctgctatctttttgtttcttaaggacaaagttcatgaccttgctggtgatgattatcggatttctgttttggagtctattaagaggtggatacaggttgctttcttgtgcttgtgcttgtgtttcctttccatttatattcccttttgtgaaatggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

314

Amino Acids

35.71

Weight (kDa)

4.77

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031340)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8344153.1_g000001 Rmu_sc0005291.1_g000006

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	432
Acc36I	ACCTGC	1 cut(s)	32
AccB1I	GGYRCC	2 cut(s)	125, 251
AccB7I	CCANNNNNTGG	1 cut(s)	264
AccII	CGCG	2 cut(s)	207, 224
AciI	CCGC	8 cut(s)	5, 90, 102, 149, 172, 205, 268, 724
AcoI	YGGCCR	2 cut(s)	483, 561
AcsI	RAATTY	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	789
AcyI	GRCGYC	3 cut(s)	126, 252, 429
AfaI	GTAC	3 cut(s)	353, 553, 732
AfiI	CCNNNNNNNGG	3 cut(s)	142, 264, 684
AflII	CTTAAG	1 cut(s)	803
AjiI	CACGTC	1 cut(s)	166
AjnI	CCWGG	2 cut(s)	354, 678
AluBI	AGCT	3 cut(s)	84, 442, 596
AluI	AGCT	3 cut(s)	84, 442, 596
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	4 cut(s)	126, 163, 201, 561
Ama87I	CYCGRG	2 cut(s)	191, 227
AoxI	GGCC	4 cut(s)	145, 187, 483, 561
ApaI	GGGCCC	1 cut(s)	149
ApeKI	GCWGC	1 cut(s)	180
ApoI	RAATTY	1 cut(s)	260
AspLEI	GCGC	5 cut(s)	101, 128, 224, 226, 254
AspS9I	GGNCC	2 cut(s)	145, 146
AsuC2I	CCSGG	1 cut(s)	437
AsuHPI	GGTGA	1 cut(s)	842
AvaI	CYCGRG	2 cut(s)	191, 227
BaeGI	GKGCMC	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	485
BanI	GGYRCC	2 cut(s)	125, 251
BanII	GRGCYC	2 cut(s)	149, 444
BauI	CACGAG	1 cut(s)	576
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	1 cut(s)	192
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	4 cut(s)	139, 202, 265, 399
BciT130I	CCWGG	2 cut(s)	356, 680
BciVI	GTATCC	1 cut(s)	867
BcnI	CCSGG	1 cut(s)	437
BcoDI	GTCTC	4 cut(s)	126, 163, 201, 561
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	178
BfoI	RGCGCY	2 cut(s)	129, 255
BfrI	CTTAAG	1 cut(s)	803
BfuAI	ACCTGC	1 cut(s)	32
BfuI	GTATCC	1 cut(s)	867
BisI	GCNGC	3 cut(s)	102, 181, 269
BlsI	GCNGC	3 cut(s)	103, 182, 270
BmcAI	AGTACT	1 cut(s)	553
Bme1390I	CCNGG	3 cut(s)	356, 437, 680
BmeT110I	CYCGRG	2 cut(s)	191, 227
BmgBI	CACGTC	1 cut(s)	166
BmgT120I	GGNCC	2 cut(s)	145, 146
BmiI	GGNNCC	3 cut(s)	127, 147, 253
BmrFI	CCNGG	3 cut(s)	356, 437, 680
BmsI	GCATC	3 cut(s)	363, 763, 791
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
BpuMI	CCSGG	1 cut(s)	437
BsaBI	GATNNNNATC	2 cut(s)	757, 837
BsaHI	GRCGYC	3 cut(s)	126, 252, 429
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	8 cut(s)	141, 184, 217, 324, 471, 494, 678, 679
BsaXI	ACNNNNNCTCC	4 cut(s)	239, 269, 294, 324
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 264, 684
Bse1I	ACTGG	2 cut(s)	345, 524
Bse8I	GATNNNNATC	2 cut(s)	757, 837
BseBI	CCWGG	2 cut(s)	356, 680
BseDI	CCNNGG	8 cut(s)	141, 184, 217, 324, 471, 494, 678, 679
BseGI	GGATG	3 cut(s)	63, 595, 625
BseJI	GATNNNNATC	2 cut(s)	757, 837
BseLI	CCNNNNNNNGG	3 cut(s)	142, 264, 684
BseMII	CTCAG	2 cut(s)	64, 539
BseNI	ACTGG	2 cut(s)	345, 524
BsePI	GCGCGC	1 cut(s)	222
BseRI	GAGGAG	2 cut(s)	107, 757
BseSI	GKGCMC	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	192
Bsh1236I	CGCG	2 cut(s)	207, 224
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	4 cut(s)	147, 189, 485, 563
BshNI	GGYRCC	2 cut(s)	125, 251
BsiEI	CGRYCG	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	444
BsiHKCI	CYCGRG	2 cut(s)	191, 227
BsiSI	CCGG	3 cut(s)	129, 437, 564
BslI	CCNNNNNNNGG	3 cut(s)	142, 264, 684
BsmAI	GTCTC	4 cut(s)	126, 163, 201, 561
BsmBI	CGTCTC	2 cut(s)	163, 561
BsnI	GGCC	4 cut(s)	147, 189, 485, 563
Bso31I	GGTCTC	1 cut(s)	126
BsoBI	CYCGRG	2 cut(s)	191, 227
Bsp120I	GGGCCC	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	149, 444
Bsp1407I	TGTACA	1 cut(s)	730
Bsp143I	GATC	1 cut(s)	297
BspACI	CCGC	8 cut(s)	5, 90, 102, 149, 172, 205, 268, 724
BspANI	GGCC	4 cut(s)	147, 189, 485, 563
BspCNI	CTCAG	2 cut(s)	63, 540
BspFNI	CGCG	2 cut(s)	207, 224
BspHI	TCATGA	1 cut(s)	817
BspLI	GGNNCC	3 cut(s)	127, 147, 253
BspMAI	CTGCAG	1 cut(s)	182
BspMI	ACCTGC	1 cut(s)	32
BspT107I	GGYRCC	2 cut(s)	125, 251
BspTI	CTTAAG	1 cut(s)	803
BspTNI	GGTCTC	1 cut(s)	126
BsrGI	TGTACA	1 cut(s)	730
BsrI	ACTGG	2 cut(s)	345, 524
BssECI	CCNNGG	8 cut(s)	141, 184, 217, 324, 471, 494, 678, 679
BssHII	GCGCGC	1 cut(s)	222
BssMI	GATC	1 cut(s)	297
BssNI	GRCGYC	3 cut(s)	126, 252, 429
BssSI	CACGAG	1 cut(s)	576
BssT1I	CCWWGG	1 cut(s)	324
Bst2BI	CACGAG	1 cut(s)	576
Bst2UI	CCWGG	2 cut(s)	356, 680
Bst6I	CTCTTC	1 cut(s)	495
BstACI	GRCGYC	3 cut(s)	126, 252, 429
BstAFI	CTTAAG	1 cut(s)	803
BstAUI	TGTACA	1 cut(s)	730
BstC8I	GCNNGC	3 cut(s)	149, 224, 368
BstDEI	CTNAG	3 cut(s)	50, 450, 548
BstDSI	CCRYGG	2 cut(s)	141, 184
BstF5I	GGATG	3 cut(s)	63, 595, 625
BstFNI	CGCG	2 cut(s)	207, 224
BstH2I	RGCGCY	2 cut(s)	129, 255
BstHHI	GCGC	5 cut(s)	101, 128, 224, 226, 254
BstKTI	GATC	1 cut(s)	300
BstMAI	GTCTC	4 cut(s)	126, 163, 201, 561
BstMBI	GATC	1 cut(s)	297
BstMCI	CGRYCG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 180, 186
BstNI	CCWGG	2 cut(s)	356, 680
BstSCI	CCNGG	3 cut(s)	354, 435, 678
BstSFI	CTRYAG	1 cut(s)	178
BstSLI	GKGCMC	1 cut(s)	149
BstUI	CGCG	2 cut(s)	207, 224
BstV1I	GCAGC	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	867
BsuRI	GGCC	4 cut(s)	147, 189, 485, 563
BtgI	CCRYGG	2 cut(s)	141, 184
BtgZI	GCGATG	1 cut(s)	597
BtrI	CACGTC	1 cut(s)	166
BtsCI	GGATG	3 cut(s)	63, 595, 625
BtsIMutI	CAGTG	2 cut(s)	338, 471
BveI	ACCTGC	1 cut(s)	32
Cac8I	GCNNGC	3 cut(s)	149, 224, 368
CciI	TCATGA	1 cut(s)	817
CfoI	GCGC	5 cut(s)	101, 128, 224, 226, 254
Cfr13I	GGNCC	2 cut(s)	145, 146
Csp6I	GTAC	3 cut(s)	352, 552, 731
CviAII	CATG	3 cut(s)	383, 734, 818
CviQI	GTAC	3 cut(s)	352, 552, 731
DdeI	CTNAG	3 cut(s)	50, 450, 548
DinI	GGCGCC	2 cut(s)	127, 253
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
EaeI	YGGCCR	2 cut(s)	483, 561
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
EciI	GGCGGA	2 cut(s)	20, 79
Ecl136II	GAGCTC	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	324
Eco24I	GRGCYC	2 cut(s)	149, 444
Eco31I	GGTCTC	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	789
Eco88I	CYCGRG	2 cut(s)	191, 227
EcoICRI	GAGCTC	1 cut(s)	442
EcoRII	CCWGG	2 cut(s)	354, 678
EcoT14I	CCWWGG	1 cut(s)	324
EcoT22I	ATGCAT	2 cut(s)	778, 784
EcoT38I	GRGCYC	2 cut(s)	149, 444
EgeI	GGCGCC	2 cut(s)	127, 253
EheI	GGCGCC	2 cut(s)	127, 253
ErhI	CCWWGG	1 cut(s)	324
Esp3I	CGTCTC	2 cut(s)	163, 561
FaeI	CATG	3 cut(s)	386, 737, 821
FatI	CATG	3 cut(s)	382, 733, 817
FauI	CCCGC	2 cut(s)	156, 717
FauNDI	CATATG	1 cut(s)	778
Fnu4HI	GCNGC	3 cut(s)	102, 181, 269
FokI	GGATG	3 cut(s)	50, 602, 632
FriOI	GRGCYC	2 cut(s)	149, 444
Fsp4HI	GCNGC	3 cut(s)	102, 181, 269
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	5 cut(s)	100, 127, 223, 225, 253
GluI	GCNGC	3 cut(s)	102, 181, 269
HaeII	RGCGCY	2 cut(s)	129, 255
HaeIII	GGCC	4 cut(s)	147, 189, 485, 563
HapII	CCGG	3 cut(s)	129, 437, 564
HhaI	GCGC	5 cut(s)	101, 128, 224, 226, 254
Hin1I	GRCGYC	3 cut(s)	126, 252, 429
Hin1II	CATG	3 cut(s)	386, 737, 821
Hin6I	GCGC	5 cut(s)	99, 126, 222, 224, 252
HinP1I	GCGC	5 cut(s)	99, 126, 222, 224, 252
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HinfI	GANTC	5 cut(s)	8, 194, 419, 745, 857
HpaII	CCGG	3 cut(s)	129, 437, 564
HphI	GGTGA	1 cut(s)	842
Hpy166II	GTNNAC	3 cut(s)	169, 650, 712
Hpy188I	TCNGA	3 cut(s)	302, 424, 843
Hpy188III	TCNNGA	5 cut(s)	41, 229, 241, 506, 818
Hpy8I	GTNNAC	3 cut(s)	169, 650, 712
Hpy99I	CGWCG	3 cut(s)	80, 290, 293
HpyAV	CCTTC	3 cut(s)	103, 247, 528
HpyCH4IV	ACGT	3 cut(s)	165, 291, 429
HpyCH4V	TGCA	5 cut(s)	27, 180, 630, 776, 782
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 180, 186
HpyF3I	CTNAG	3 cut(s)	50, 450, 548
HpySE526I	ACGT	3 cut(s)	165, 291, 429
Hsp92I	GRCGYC	3 cut(s)	126, 252, 429
Hsp92II	CATG	3 cut(s)	386, 737, 821
HspAI	GCGC	5 cut(s)	99, 126, 222, 224, 252
KasI	GGCGCC	2 cut(s)	125, 251
Kzo9I	GATC	1 cut(s)	297
LmnI	GCTCC	1 cut(s)	439
Lsp1109I	GCAGC	1 cut(s)	192
LweI	GCATC	3 cut(s)	363, 763, 791
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	3 cut(s)	165, 291, 429
MalI	GATC	1 cut(s)	299
MboI	GATC	1 cut(s)	297
MboII	GAAGA	4 cut(s)	417, 420, 482, 782
MhlI	GDGCHC	2 cut(s)	149, 444
MlsI	TGGCCA	1 cut(s)	485
MluCI	AATT	4 cut(s)	260, 458, 500, 704
MluNI	TGGCCA	1 cut(s)	485
Mly113I	GGCGCC	2 cut(s)	126, 252
MlyI	GAGTC	3 cut(s)	203, 754, 866
MmeI	TCCRAC	2 cut(s)	519, 597
Mox20I	TGGCCA	1 cut(s)	485
Mph1103I	ATGCAT	2 cut(s)	778, 784
MscI	TGGCCA	1 cut(s)	485
MseI	TTAA	4 cut(s)	528, 804, 864, 943
Msp20I	TGGCCA	1 cut(s)	485
MspCI	CTTAAG	1 cut(s)	803
MspI	CCGG	3 cut(s)	129, 437, 564
MspR9I	CCNGG	3 cut(s)	356, 437, 680
MvaI	CCWGG	2 cut(s)	356, 680
MvnI	CGCG	2 cut(s)	207, 224
MwoI	GCNNNNNNNGC	3 cut(s)	98, 180, 186
NarI	GGCGCC	2 cut(s)	126, 252
NciI	CCSGG	1 cut(s)	437
NdeI	CATATG	1 cut(s)	778
NdeII	GATC	1 cut(s)	297
NlaIII	CATG	3 cut(s)	386, 737, 821
NlaIV	GGNNCC	3 cut(s)	127, 147, 253
NmeAIII	GCCGAG	2 cut(s)	198, 475
NsiI	ATGCAT	2 cut(s)	778, 784
PaeR7I	CTCGAG	2 cut(s)	191, 227
PagI	TCATGA	1 cut(s)	817
PasI	CCCWGGG	1 cut(s)	679
PauI	GCGCGC	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	5 cut(s)	75, 162, 198, 225, 282
PfeI	GAWTC	2 cut(s)	8, 419
PflMI	CCANNNNNTGG	1 cut(s)	264
PkrI	GCNGC	3 cut(s)	103, 182, 270
Ple19I	CGATCG	1 cut(s)	300
PleI	GAGTC	3 cut(s)	202, 753, 865
PluTI	GGCGCC	2 cut(s)	129, 255
PpsI	GAGTC	3 cut(s)	202, 753, 865
Psp124BI	GAGCTC	1 cut(s)	444
Psp6I	CCWGG	2 cut(s)	354, 678
PspGI	CCWGG	2 cut(s)	354, 678
PspN4I	GGNNCC	3 cut(s)	127, 147, 253
PspOMI	GGGCCC	1 cut(s)	145
PspPI	GGNCC	2 cut(s)	145, 146
PspXI	VCTCGAGB	1 cut(s)	191
PstI	CTGCAG	1 cut(s)	182
PteI	GCGCGC	1 cut(s)	222
PvuI	CGATCG	1 cut(s)	300
RsaI	GTAC	3 cut(s)	353, 553, 732
RsaNI	GTAC	3 cut(s)	352, 552, 731
SacI	GAGCTC	1 cut(s)	444
SaqAI	TTAA	4 cut(s)	528, 804, 864, 943
SatI	GCNGC	3 cut(s)	102, 181, 269
Sau3AI	GATC	1 cut(s)	297
Sau96I	GGNCC	2 cut(s)	145, 146
ScaI	AGTACT	1 cut(s)	553
SchI	GAGTC	3 cut(s)	203, 754, 866
ScrFI	CCNGG	3 cut(s)	356, 437, 680
SduI	GDGCHC	2 cut(s)	149, 444
SfaNI	GCATC	3 cut(s)	363, 763, 791
SfcI	CTRYAG	1 cut(s)	178
SfoI	GGCGCC	2 cut(s)	127, 253
Sfr274I	CTCGAG	2 cut(s)	191, 227
SlaI	CTCGAG	2 cut(s)	191, 227
SmlI	CTYRAG	3 cut(s)	191, 227, 803
SmoI	CTYRAG	3 cut(s)	191, 227, 803
Sse9I	AATT	4 cut(s)	260, 458, 500, 704
SsiI	CCGC	8 cut(s)	5, 90, 102, 149, 172, 205, 268, 724
SspDI	GGCGCC	2 cut(s)	125, 251
SspMI	CTAG	1 cut(s)	32
SstI	GAGCTC	1 cut(s)	444
StyD4I	CCNGG	3 cut(s)	354, 435, 678
StyI	CCWWGG	1 cut(s)	324
TaiI	ACGT	3 cut(s)	168, 294, 432
TaqI	TCGA	8 cut(s)	11, 42, 78, 192, 228, 240, 276, 296
TasI	AATT	4 cut(s)	260, 458, 500, 704
TatI	WGTACW	2 cut(s)	551, 730
TauI	GCSGC	2 cut(s)	104, 271
TfiI	GAWTC	2 cut(s)	8, 419
Tru1I	TTAA	4 cut(s)	528, 804, 864, 943
Tru9I	TTAA	4 cut(s)	528, 804, 864, 943
TscAI	CASTG	2 cut(s)	345, 471
TseI	GCWGC	1 cut(s)	180
TspDTI	ATGAA	5 cut(s)	6, 371, 606, 681, 806
TspGWI	ACGGA	1 cut(s)	130
TspRI	CASTG	2 cut(s)	345, 471
Van91I	CCANNNNNTGG	1 cut(s)	264
Vha464I	CTTAAG	1 cut(s)	803
XapI	RAATTY	1 cut(s)	260
XhoI	CTCGAG	2 cut(s)	191, 227
XspI	CTAG	1 cut(s)	32
ZraI	GACGTC	1 cut(s)	430
ZrmI	AGTACT	1 cut(s)	553
Zsp2I	ATGCAT	2 cut(s)	778, 784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.