Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005566.1

Orthogroup ID

OG0015407

Physical Location & Seq

Genomic Coordinates Forward (+)

28623 .. 34858

Gene Structure 6236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005566.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

atgaaggaagaggaggacggaccacccaatagagaactgtacgcactgcttcacatatcgcccgacgcctccgatgaggaaatcagaaaatcgtaccggcaatgggcccaaatctaccacccagataagattcaagctccccatatgaaagaagctgctacagaaaacttccaacgaatatgcgaagcttatgagatactgtcggatgagaacaaaaggaagatatatgacatttatggtatggaagggttgacttctggtttggagcttggtacaaagctcaataaagcagaagagctaaaggaggaacttgagaggttgcggaaattgaaggaacagcagaaggtcgcagcacattttcaaccttctggtaccatactggccaatatgtctttaccacactttttacgcggccatggcttcatgagaggaatggctatgacaagttcagttcagtctcagctatcaacacgcaatgcactatcaattggtggaaatgtggcagttaatgggaactctggcggcggaggagctactcttgtttttcagcatcagctttcaccagtttcttccatagagtttgtaggctcaaccggcttaaggtcgcttcttggggtgcagacatctcgtcacttatcccagcatttaactgcaacaatgggacttgcactgtctttgaaagacggttcgctgaatctgtccaacatgtggacgcgacaactgtctgaaactacaagtggaaatatagagcttgctctgggctctgattcaactattggagtaggatggcaaaagaaagaacagaaatcatctgcttctggacagctgaagttgggaataaattcttttgaggcgtcagccaattatactcgtcgtttttcaaaaaagtctcatggtcatctagaaggcaaaattggaagccatgcccttgtgattgaagttggtggtgggagaaagttatctaaatttagcactgtccgcatgttgtattcaataggaattcagaaattcatcctcaaaccttattatcttaagagggaaaagcagaaggctctagagaacatggaaagaacttctgccaaggttcaagaggcacgagcagcagcagataaagctaagcagttattacaaaatgtagcaaataggaaacagaaaaagcagcaagaagtagggggcttggtaatcacaaaggcattgtacgggagtgttaaagctttgaagaaaagggatgaacctgtagaaccaaatgatgaattagcttcacagttcattgatgttgcattgcctctaaatttccttgtcagcgatgatgggcaactcaagcttcatgaaggcgtaaagaagtctggcattatgggcttttgtgatccatgtcctggagagcctaagcagttgtatgtggagtacacttatggtggcaatatatacgaggtggtagttgatgattatgccgagttgcttatacctcaggaaaggcacagaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009536 GO:0009628 GO:0009642 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055122 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3395 DnaJ

Protein Analysis

495

Amino Acids

54.88

Weight (kDa)

9.02

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35720
fragaria_vesca	FvH4_5g18830 FvH4_5g18830 FvH4_5g18830
malus_domestica	MD06G1057900.v1.1
prunus_persica	Prupe.5G069200_v2.0.a1 Prupe.5G069200_v2.0.a1
pyrus_communis	pycom06g04870
rosa_chinensis	RchiOBHm_Chr7g0203181
rosa_laevigata	RLG00000003545
rosa_multiflora	Rmu_sc0005566.1_g000010 Rmu_sc0014667.1_g000004
rosa_roxburghii	Rroxscaffold_3G00254010
rosa_rugosa	Rorug07G0074900
rosa_samantha	Rh7BG203500
rosa_wichuraiana	Rw7G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	371
AccB1I	GGYRCC	1 cut(s)	371
AccB7I	CCANNNNNTGG	2 cut(s)	708, 1376
AccII	CGCG	2 cut(s)	411, 715
AciI	CCGC	5 cut(s)	322, 411, 522, 525, 979
AclWI	GGATC	1 cut(s)	1361
AcoI	YGGCCR	2 cut(s)	381, 412
AcsI	RAATTY	6 cut(s)	841, 965, 999, 1007, 1291, 1482
AcuI	CTGAAG	1 cut(s)	848
AcyI	GRCGYC	2 cut(s)	66, 854
AfaI	GTAC	6 cut(s)	41, 95, 274, 373, 1199, 1406
AfiI	CCNNNNNNNGG	4 cut(s)	103, 600, 708, 1376
AflII	CTTAAG	2 cut(s)	598, 1031
AflIII	ACRYGT	1 cut(s)	705
AhdI	GACNNNNNGTC	1 cut(s)	627
AjnI	CCWGG	1 cut(s)	1375
AjuI	GAANNNNNNNTTGG	2 cut(s)	897, 929
Alw26I	GTCTC	2 cut(s)	462, 894
AlwI	GGATC	1 cut(s)	1361
AoxI	GGCC	3 cut(s)	105, 381, 412
ApaI	GGGCCC	1 cut(s)	109
ApeKI	GCWGC	5 cut(s)	155, 350, 1100, 1103, 1159
ApoI	RAATTY	6 cut(s)	841, 965, 999, 1007, 1291, 1482
ArsI	GACNNNNNNTTYG	2 cut(s)	244, 276
Asp700I	GAANNNNTTC	1 cut(s)	841
Asp718I	GGTACC	1 cut(s)	371
AspS9I	GGNCC	3 cut(s)	20, 105, 106
AsuHPI	GGTGA	1 cut(s)	552
AvaII	GGWCC	1 cut(s)	20
AxyI	CCTNAGG	1 cut(s)	1467
BaeGI	GKGCMC	1 cut(s)	109
BalI	TGGCCA	1 cut(s)	383
BanI	GGYRCC	1 cut(s)	371
BanII	GRGCYC	2 cut(s)	109, 764
BauI	CACGAG	1 cut(s)	1095
BbvI	GCAGC	5 cut(s)	142, 362, 1112, 1115, 1171
BccI	CCATC	2 cut(s)	780, 1304
BcgI	CGANNNNNNTGC	2 cut(s)	608, 642
BciT130I	CCWGG	1 cut(s)	1377
BcoDI	GTCTC	2 cut(s)	462, 894
BfaI	CTAG	2 cut(s)	902, 1055
BfmI	CTRYAG	2 cut(s)	159, 1236
BfrI	CTTAAG	2 cut(s)	598, 1031
BisI	GCNGC	7 cut(s)	156, 351, 412, 523, 1101, 1104, 1160
BlpI	GCTNAGC	1 cut(s)	1116
BlsI	GCNGC	7 cut(s)	157, 352, 413, 524, 1102, 1105, 1161
Bme1390I	CCNGG	1 cut(s)	1377
Bme18I	GGWCC	1 cut(s)	20
BmeRI	GACNNNNNGTC	1 cut(s)	627
BmgT120I	GGNCC	3 cut(s)	20, 105, 106
BmiI	GGNNCC	2 cut(s)	107, 373
BmrFI	CCNGG	1 cut(s)	1377
BmsI	GCATC	1 cut(s)	559
BoxI	GACNNNNGTC	1 cut(s)	721
BpmI	CTGGAG	1 cut(s)	1398
Bpu10I	CCTNAGC	1 cut(s)	1386
Bpu1102I	GCTNAGC	1 cut(s)	1116
BpuEI	CTTGAG	2 cut(s)	332, 1304
BsaHI	GRCGYC	2 cut(s)	66, 854
BsaJI	CCNNGG	2 cut(s)	415, 1080
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 600, 708, 1376
Bse118I	RCCGGY	2 cut(s)	96, 593
Bse1I	ACTGG	2 cut(s)	384, 563
Bse21I	CCTNAGG	1 cut(s)	1467
Bse3DI	GCAATG	3 cut(s)	107, 481, 1280
BseBI	CCWGG	1 cut(s)	1377
BseDI	CCNNGG	2 cut(s)	415, 1080
BseGI	GGATG	4 cut(s)	211, 791, 1011, 1234
BseLI	CCNNNNNNNGG	4 cut(s)	103, 600, 708, 1376
BseMI	GCAATG	3 cut(s)	107, 481, 1280
BseMII	CTCAG	2 cut(s)	473, 1481
BseNI	ACTGG	2 cut(s)	384, 563
BseRI	GAGGAG	2 cut(s)	26, 543
BseSI	GKGCMC	1 cut(s)	109
BseXI	GCAGC	5 cut(s)	142, 362, 1112, 1115, 1171
BseYI	CCCAGC	1 cut(s)	639
BsgI	GTGCAG	1 cut(s)	638
Bsh1236I	CGCG	2 cut(s)	411, 715
BshFI	GGCC	3 cut(s)	107, 383, 414
BshNI	GGYRCC	1 cut(s)	371
BsiSI	CCGG	2 cut(s)	97, 594
BslFI	GGGAC	1 cut(s)	675
BslI	CCNNNNNNNGG	4 cut(s)	103, 600, 708, 1376
BsmAI	GTCTC	2 cut(s)	462, 894
BsmFI	GGGAC	1 cut(s)	675
BsnI	GGCC	3 cut(s)	107, 383, 414
Bsp120I	GGGCCC	1 cut(s)	105
Bsp1286I	GDGCHC	2 cut(s)	109, 764
Bsp143I	GATC	1 cut(s)	1366
Bsp1720I	GCTNAGC	1 cut(s)	1116
Bsp19I	CCATGG	1 cut(s)	415
BspACI	CCGC	5 cut(s)	322, 411, 522, 525, 979
BspANI	GGCC	3 cut(s)	107, 383, 414
BspCNI	CTCAG	2 cut(s)	472, 1480
BspFNI	CGCG	2 cut(s)	411, 715
BspHI	TCATGA	2 cut(s)	423, 1327
BspLI	GGNNCC	2 cut(s)	107, 373
BspPI	GGATC	1 cut(s)	1361
BspQI	GCTCTTC	1 cut(s)	288
BspT107I	GGYRCC	1 cut(s)	371
BspTI	CTTAAG	2 cut(s)	598, 1031
BsrDI	GCAATG	3 cut(s)	107, 481, 1280
BsrFI	RCCGGY	2 cut(s)	96, 593
BsrI	ACTGG	2 cut(s)	384, 563
BssAI	RCCGGY	2 cut(s)	96, 593
BssECI	CCNNGG	2 cut(s)	415, 1080
BssMI	GATC	1 cut(s)	1366
BssNI	GRCGYC	2 cut(s)	66, 854
BssSI	CACGAG	1 cut(s)	1095
BssT1I	CCWWGG	2 cut(s)	415, 1080
Bst2BI	CACGAG	1 cut(s)	1095
Bst2UI	CCWGG	1 cut(s)	1377
Bst4CI	ACNGT	7 cut(s)	39, 201, 672, 686, 723, 976, 1266
Bst6I	CTCTTC	2 cut(s)	3, 288
BstACI	GRCGYC	2 cut(s)	66, 854
BstAFI	CTTAAG	2 cut(s)	598, 1031
BstC8I	GCNNGC	1 cut(s)	753
BstDEI	CTNAG	4 cut(s)	459, 1116, 1386, 1467
BstDSI	CCRYGG	1 cut(s)	415
BstF5I	GGATG	4 cut(s)	211, 791, 1011, 1234
BstFNI	CGCG	2 cut(s)	411, 715
BstKTI	GATC	1 cut(s)	1369
BstMAI	GTCTC	2 cut(s)	462, 894
BstMBI	GATC	1 cut(s)	1366
BstMWI	GCNNNNNNNGC	7 cut(s)	417, 594, 978, 1100, 1112, 1321, 1356
BstNI	CCWGG	1 cut(s)	1377
BstNSI	RCATGY	2 cut(s)	709, 985
BstPAI	GACNNNNGTC	1 cut(s)	721
BstSCI	CCNGG	1 cut(s)	1375
BstSFI	CTRYAG	2 cut(s)	159, 1236
BstSLI	GKGCMC	1 cut(s)	109
BstUI	CGCG	2 cut(s)	411, 715
BstV1I	GCAGC	5 cut(s)	142, 362, 1112, 1115, 1171
Bsu36I	CCTNAGG	1 cut(s)	1467
BsuRI	GGCC	3 cut(s)	107, 383, 414
BtgI	CCRYGG	1 cut(s)	415
BtgZI	GCGATG	1 cut(s)	1320
BtsCI	GGATG	4 cut(s)	211, 791, 1011, 1234
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	3 cut(s)	44, 668, 972
Cac8I	GCNNGC	1 cut(s)	753
CciI	TCATGA	2 cut(s)	423, 1327
Cfr10I	RCCGGY	2 cut(s)	96, 593
Cfr13I	GGNCC	3 cut(s)	20, 105, 106
CseI	GACGC	3 cut(s)	74, 721, 843
Csp6I	GTAC	6 cut(s)	40, 94, 273, 372, 1198, 1405
CviAII	CATG	9 cut(s)	416, 424, 706, 893, 923, 982, 1063, 1328, 1371
CviQI	GTAC	6 cut(s)	40, 94, 273, 372, 1198, 1405
DdeI	CTNAG	4 cut(s)	459, 1116, 1386, 1467
DpnI	GATC	1 cut(s)	1368
DpnII	GATC	1 cut(s)	1366
DriI	GACNNNNNGTC	1 cut(s)	627
EaeI	YGGCCR	2 cut(s)	381, 412
Eam1104I	CTCTTC	2 cut(s)	3, 288
Eam1105I	GACNNNNNGTC	1 cut(s)	627
EarI	CTCTTC	2 cut(s)	3, 288
EciI	GGCGGA	1 cut(s)	540
Eco130I	CCWWGG	2 cut(s)	415, 1080
Eco24I	GRGCYC	2 cut(s)	109, 764
Eco47I	GGWCC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	848
Eco81I	CCTNAGG	1 cut(s)	1467
EcoRI	GAATTC	1 cut(s)	999
EcoRII	CCWGG	1 cut(s)	1375
EcoT14I	CCWWGG	2 cut(s)	415, 1080
EcoT38I	GRGCYC	2 cut(s)	109, 764
ErhI	CCWWGG	2 cut(s)	415, 1080
FaeI	CATG	9 cut(s)	419, 427, 709, 896, 926, 985, 1066, 1331, 1374
FaqI	GGGAC	1 cut(s)	675
FatI	CATG	9 cut(s)	415, 423, 705, 892, 922, 981, 1062, 1327, 1370
FauNDI	CATATG	1 cut(s)	144
Fnu4HI	GCNGC	7 cut(s)	156, 351, 412, 523, 1101, 1104, 1160
FokI	GGATG	4 cut(s)	218, 798, 998, 1241
FriOI	GRGCYC	2 cut(s)	109, 764
Fsp4HI	GCNGC	7 cut(s)	156, 351, 412, 523, 1101, 1104, 1160
FspBI	CTAG	2 cut(s)	902, 1055
GluI	GCNGC	7 cut(s)	156, 351, 412, 523, 1101, 1104, 1160
GsaI	CCCAGC	1 cut(s)	643
GsuI	CTGGAG	1 cut(s)	1398
HaeIII	GGCC	3 cut(s)	107, 383, 414
HapII	CCGG	2 cut(s)	97, 594
HgaI	GACGC	3 cut(s)	74, 721, 843
Hin1I	GRCGYC	2 cut(s)	66, 854
Hin1II	CATG	9 cut(s)	419, 427, 709, 896, 926, 985, 1066, 1331, 1374
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HindIII	AAGCTT	3 cut(s)	186, 1212, 1322
HinfI	GANTC	3 cut(s)	130, 694, 767
HpaII	CCGG	2 cut(s)	97, 594
HphI	GGTGA	1 cut(s)	552
Hpy166II	GTNNAC	3 cut(s)	252, 711, 1407
Hpy188I	TCNGA	6 cut(s)	73, 86, 205, 727, 766, 1005
Hpy188III	TCNNGA	7 cut(s)	424, 819, 902, 1055, 1088, 1328, 1469
Hpy8I	GTNNAC	3 cut(s)	252, 711, 1407
Hpy99I	CGWCG	2 cut(s)	68, 876
HpyAV	CCTTC	7 cut(s)	239, 325, 337, 375, 899, 1042, 1325
HpyCH4III	ACNGT	7 cut(s)	39, 201, 672, 686, 723, 976, 1266
HpyCH4V	TGCA	5 cut(s)	479, 619, 653, 668, 1280
HpyF10VI	GCNNNNNNNGC	7 cut(s)	417, 594, 978, 1100, 1112, 1321, 1356
HpyF3I	CTNAG	4 cut(s)	459, 1116, 1386, 1467
Hsp92I	GRCGYC	2 cut(s)	66, 854
Hsp92II	CATG	9 cut(s)	419, 427, 709, 896, 926, 985, 1066, 1331, 1374
KpnI	GGTACC	1 cut(s)	375
Kzo9I	GATC	1 cut(s)	1366
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	3 cut(s)	142, 265, 530
Lsp1109I	GCAGC	5 cut(s)	142, 362, 1112, 1115, 1171
LweI	GCATC	1 cut(s)	559
MaeI	CTAG	2 cut(s)	902, 1055
MaeIII	GTNAC	1 cut(s)	629
MalI	GATC	1 cut(s)	1368
MboI	GATC	1 cut(s)	1366
MboII	GAAGA	5 cut(s)	20, 232, 305, 561, 1231
MfeI	CAATTG	1 cut(s)	486
MhlI	GDGCHC	2 cut(s)	109, 764
MlsI	TGGCCA	1 cut(s)	383
MluNI	TGGCCA	1 cut(s)	383
MmeI	TCCRAC	3 cut(s)	183, 196, 726
Mox20I	TGGCCA	1 cut(s)	383
MroXI	GAANNNNTTC	1 cut(s)	841
MscI	TGGCCA	1 cut(s)	383
MseI	TTAA	5 cut(s)	507, 599, 647, 1032, 1209
Msp20I	TGGCCA	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	826
MspCI	CTTAAG	2 cut(s)	598, 1031
MspI	CCGG	2 cut(s)	97, 594
MspR9I	CCNGG	1 cut(s)	1377
MunI	CAATTG	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	1377
MvnI	CGCG	2 cut(s)	411, 715
MwoI	GCNNNNNNNGC	7 cut(s)	417, 594, 978, 1100, 1112, 1321, 1356
NcoI	CCATGG	1 cut(s)	415
NdeI	CATATG	1 cut(s)	144
NdeII	GATC	1 cut(s)	1366
NlaIII	CATG	9 cut(s)	419, 427, 709, 896, 926, 985, 1066, 1331, 1374
NlaIV	GGNNCC	2 cut(s)	107, 373
NmeAIII	GCCGAG	1 cut(s)	1477
NmuCI	GTSAC	1 cut(s)	629
NspI	RCATGY	2 cut(s)	709, 985
PagI	TCATGA	2 cut(s)	423, 1327
PciI	ACATGT	1 cut(s)	705
PciSI	GCTCTTC	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	841
PfeI	GAWTC	3 cut(s)	130, 694, 767
PflMI	CCANNNNNTGG	2 cut(s)	708, 1376
PfoI	TCCNGGA	1 cut(s)	1375
PkrI	GCNGC	7 cut(s)	157, 352, 413, 524, 1102, 1105, 1161
PscI	ACATGT	1 cut(s)	705
PshAI	GACNNNNGTC	1 cut(s)	721
Psp6I	CCWGG	1 cut(s)	1375
PspFI	CCCAGC	1 cut(s)	639
PspGI	CCWGG	1 cut(s)	1375
PspN4I	GGNNCC	2 cut(s)	107, 373
PspOMI	GGGCCC	1 cut(s)	105
PspPI	GGNCC	3 cut(s)	20, 105, 106
PvuII	CAGCTG	1 cut(s)	826
RsaI	GTAC	6 cut(s)	41, 95, 274, 373, 1199, 1406
RsaNI	GTAC	6 cut(s)	40, 94, 273, 372, 1198, 1405
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	5 cut(s)	507, 599, 647, 1032, 1209
SatI	GCNGC	7 cut(s)	156, 351, 412, 523, 1101, 1104, 1160
Sau3AI	GATC	1 cut(s)	1366
Sau96I	GGNCC	3 cut(s)	20, 105, 106
ScrFI	CCNGG	1 cut(s)	1377
SduI	GDGCHC	2 cut(s)	109, 764
SfaNI	GCATC	1 cut(s)	559
SfcI	CTRYAG	2 cut(s)	159, 1236
SinI	GGWCC	1 cut(s)	20
SmlI	CTYRAG	4 cut(s)	311, 598, 1031, 1319
SmoI	CTYRAG	4 cut(s)	311, 598, 1031, 1319
SsiI	CCGC	5 cut(s)	322, 411, 522, 525, 979
SspMI	CTAG	2 cut(s)	902, 1055
StyD4I	CCNGG	1 cut(s)	1375
StyI	CCWWGG	2 cut(s)	415, 1080
TaaI	ACNGT	7 cut(s)	39, 201, 672, 686, 723, 976, 1266
TatI	WGTACW	1 cut(s)	1404
TauI	GCSGC	2 cut(s)	414, 525
TfiI	GAWTC	3 cut(s)	130, 694, 767
Tru1I	TTAA	5 cut(s)	507, 599, 647, 1032, 1209
Tru9I	TTAA	5 cut(s)	507, 599, 647, 1032, 1209
TscAI	CASTG	3 cut(s)	51, 675, 979
TseFI	GTSAC	1 cut(s)	629
TseI	GCWGC	5 cut(s)	155, 350, 1100, 1103, 1159
Tsp45I	GTSAC	1 cut(s)	629
TspDTI	ATGAA	9 cut(s)	17, 161, 412, 1000, 1245, 1258, 1266, 1316, 1344
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	3 cut(s)	51, 675, 979
Van91I	CCANNNNNTGG	2 cut(s)	708, 1376
Vha464I	CTTAAG	2 cut(s)	598, 1031
VpaK11BI	GGWCC	1 cut(s)	20
XapI	RAATTY	6 cut(s)	841, 965, 999, 1007, 1291, 1482
XbaI	TCTAGA	2 cut(s)	901, 1054
XceI	RCATGY	2 cut(s)	709, 985
XmnI	GAANNNNTTC	1 cut(s)	841
XspI	CTAG	2 cut(s)	902, 1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.