Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005573.1

Orthogroup ID

OG0031345

Physical Location & Seq

Genomic Coordinates Reverse (-)

71157 .. 74179

Gene Structure 3023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgtcgaccagggacagccgtcatcatcttcatcctcggcgaatagggcatcaattcttattctcactctctgtgtgtttgcaaatcggcgctgatggccaagaccattctggcaccggcgaggccggttacatcggtagccacaccatgctgcagcttttactcggtggcttcagcaccgtcgtcgttgacaaccttgacaattcctctgaaattcctattaaccttgtcagagaactcgatggggattttggcaggaacctctcggctgggcatggtcccagactggcactggatttgcagggacctagaccggctatcttttttctggcagggcttgcagtttcaaagaatggggaccgggctaaactaggaccaggacaagaggccgcaacggaggagcacgatgacggcgcccgagttgaacttgaagagcgagaggtagaggaaatgaggaataatggactgactgatctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0003978 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005829 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0022622 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00052 ko00520 ko01100 map00052 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

159

Amino Acids

17.2

Weight (kDa)

5.13

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031345)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005573.1_g000012 Rmu_sc0005810.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	113, 413
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	390
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	157
AcyI	GRCGYC	1 cut(s)	414
AgsI	TTSAA	3 cut(s)	348, 425, 431
AjnI	CCWGG	2 cut(s)	8, 376
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw21I	GWGCWC	1 cut(s)	405
Ama87I	CYCGRG	1 cut(s)	417
AoxI	GGCC	3 cut(s)	97, 123, 387
ApeKI	GCWGC	2 cut(s)	151, 154
ApoI	RAATTY	1 cut(s)	213
AspLEI	GCGC	2 cut(s)	92, 416
AspS9I	GGNCC	4 cut(s)	278, 305, 358, 374
AsuC2I	CCSGG	1 cut(s)	362
AvaI	CYCGRG	1 cut(s)	417
AvaII	GGWCC	4 cut(s)	278, 305, 358, 374
BalI	TGGCCA	1 cut(s)	99
BanI	GGYRCC	2 cut(s)	113, 413
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	2 cut(s)	138, 166
BccI	CCATC	2 cut(s)	89, 236
BceAI	ACGGC	2 cut(s)	3, 427
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BciT130I	CCWGG	2 cut(s)	10, 378
BcnI	CCSGG	1 cut(s)	362
BfaI	CTAG	3 cut(s)	309, 371, 478
BfmI	CTRYAG	1 cut(s)	152
BfoI	RGCGCY	2 cut(s)	93, 417
BisI	GCNGC	3 cut(s)	152, 155, 390
BlsI	GCNGC	3 cut(s)	153, 156, 391
Bme1390I	CCNGG	3 cut(s)	10, 362, 378
Bme18I	GGWCC	4 cut(s)	278, 305, 358, 374
BmeT110I	CYCGRG	1 cut(s)	417
BmgT120I	GGNCC	4 cut(s)	278, 305, 358, 374
BmiI	GGNNCC	6 cut(s)	115, 260, 280, 306, 359, 415
BmrFI	CCNGG	3 cut(s)	10, 362, 378
BmsI	GCATC	1 cut(s)	58
BoxI	GACNNNNGTC	1 cut(s)	18
BpuMI	CCSGG	1 cut(s)	362
BsaHI	GRCGYC	1 cut(s)	414
BsaJI	CCNNGG	2 cut(s)	9, 35
Bse118I	RCCGGY	3 cut(s)	116, 125, 313
Bse1I	ACTGG	2 cut(s)	291, 297
BseBI	CCWGG	2 cut(s)	10, 378
BseDI	CCNNGG	2 cut(s)	9, 35
BseGI	GGATG	1 cut(s)	31
BseNI	ACTGG	2 cut(s)	291, 297
BseRI	GAGGAG	1 cut(s)	413
BseXI	GCAGC	2 cut(s)	138, 166
BseYI	CCCAGC	1 cut(s)	269
BshFI	GGCC	3 cut(s)	99, 125, 389
BshNI	GGYRCC	2 cut(s)	113, 413
BsiHKAI	GWGCWC	1 cut(s)	405
BsiHKCI	CYCGRG	1 cut(s)	417
BsiSI	CCGG	4 cut(s)	117, 126, 314, 361
BslFI	GGGAC	4 cut(s)	26, 264, 318, 371
BsmFI	GGGAC	4 cut(s)	26, 264, 318, 371
BsnI	GGCC	3 cut(s)	99, 125, 389
BsoBI	CYCGRG	1 cut(s)	417
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	1 cut(s)	472
BspACI	CCGC	1 cut(s)	390
BspANI	GGCC	3 cut(s)	99, 125, 389
BspLI	GGNNCC	6 cut(s)	115, 260, 280, 306, 359, 415
BspMAI	CTGCAG	1 cut(s)	156
BspQI	GCTCTTC	1 cut(s)	426
BspT107I	GGYRCC	2 cut(s)	113, 413
BsrFI	RCCGGY	3 cut(s)	116, 125, 313
BsrI	ACTGG	2 cut(s)	291, 297
BssAI	RCCGGY	3 cut(s)	116, 125, 313
BssECI	CCNNGG	2 cut(s)	9, 35
BssMI	GATC	1 cut(s)	472
BssNI	GRCGYC	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	10, 378
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	426
BstACI	GRCGYC	1 cut(s)	414
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	31
BstH2I	RGCGCY	2 cut(s)	93, 417
BstHHI	GCGC	2 cut(s)	92, 416
BstKTI	GATC	1 cut(s)	475
BstMBI	GATC	1 cut(s)	472
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 96, 338
BstNI	CCWGG	2 cut(s)	10, 378
BstPAI	GACNNNNGTC	1 cut(s)	18
BstSCI	CCNGG	3 cut(s)	8, 360, 376
BstSFI	CTRYAG	1 cut(s)	152
BstV1I	GCAGC	2 cut(s)	138, 166
BsuRI	GGCC	3 cut(s)	99, 125, 389
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	290
Cac8I	GCNNGC	1 cut(s)	339
CfoI	GCGC	2 cut(s)	92, 416
Cfr10I	RCCGGY	3 cut(s)	116, 125, 313
Cfr13I	GGNCC	4 cut(s)	278, 305, 358, 374
CviAII	CATG	2 cut(s)	148, 275
DinI	GGCGCC	1 cut(s)	415
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco47I	GGWCC	4 cut(s)	278, 305, 358, 374
Eco57I	CTGAAG	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	417
EcoO109I	RGGNCCY	1 cut(s)	305
EcoRII	CCWGG	2 cut(s)	8, 376
EgeI	GGCGCC	1 cut(s)	415
EheI	GGCGCC	1 cut(s)	415
FaeI	CATG	2 cut(s)	151, 278
FaiI	YATR	2 cut(s)	149, 276
FaqI	GGGAC	4 cut(s)	26, 264, 318, 371
FatI	CATG	2 cut(s)	147, 274
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	152, 155, 390
FokI	GGATG	1 cut(s)	18
Fsp4HI	GCNGC	3 cut(s)	152, 155, 390
FspBI	CTAG	3 cut(s)	309, 371, 478
GlaI	GCGC	2 cut(s)	91, 415
GluI	GCNGC	3 cut(s)	152, 155, 390
GsaI	CCCAGC	1 cut(s)	273
HaeII	RGCGCY	2 cut(s)	93, 417
HaeIII	GGCC	3 cut(s)	99, 125, 389
HapII	CCGG	4 cut(s)	117, 126, 314, 361
HhaI	GCGC	2 cut(s)	92, 416
Hin1I	GRCGYC	1 cut(s)	414
Hin1II	CATG	2 cut(s)	151, 278
Hin6I	GCGC	2 cut(s)	90, 414
HinP1I	GCGC	2 cut(s)	90, 414
HincII	GTYRAC	2 cut(s)	6, 190
HindII	GTYRAC	2 cut(s)	6, 190
HpaII	CCGG	4 cut(s)	117, 126, 314, 361
Hpy166II	GTNNAC	2 cut(s)	6, 190
Hpy188I	TCNGA	2 cut(s)	211, 233
Hpy8I	GTNNAC	2 cut(s)	6, 190
Hpy99I	CGWCG	2 cut(s)	185, 188
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	4 cut(s)	82, 154, 301, 341
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 96, 338
Hsp92I	GRCGYC	1 cut(s)	414
Hsp92II	CATG	2 cut(s)	151, 278
HspAI	GCGC	2 cut(s)	90, 414
KasI	GGCGCC	1 cut(s)	413
Kzo9I	GATC	1 cut(s)	472
LguI	GCTCTTC	1 cut(s)	426
LmnI	GCTCC	1 cut(s)	400
Lsp1109I	GCAGC	2 cut(s)	138, 166
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	3 cut(s)	309, 371, 478
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	1 cut(s)	474
MboI	GATC	1 cut(s)	472
MboII	GAAGA	2 cut(s)	20, 443
MhlI	GDGCHC	1 cut(s)	405
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	3 cut(s)	53, 202, 213
MluNI	TGGCCA	1 cut(s)	99
Mly113I	GGCGCC	1 cut(s)	414
MnlI	CCTC	9 cut(s)	45, 115, 217, 272, 379, 391, 433, 439, 447
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	1 cut(s)	222
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	4 cut(s)	117, 126, 314, 361
MspR9I	CCNGG	3 cut(s)	10, 362, 378
MvaI	CCWGG	2 cut(s)	10, 378
MwoI	GCNNNNNNNGC	3 cut(s)	46, 96, 338
NarI	GGCGCC	1 cut(s)	414
NciI	CCSGG	1 cut(s)	362
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	2 cut(s)	151, 278
NlaIV	GGNNCC	6 cut(s)	115, 260, 280, 306, 359, 415
NmeAIII	GCCGAG	2 cut(s)	16, 245
PciSI	GCTCTTC	1 cut(s)	426
PkrI	GCNGC	3 cut(s)	153, 156, 391
PluTI	GGCGCC	1 cut(s)	417
PpuMI	RGGWCCY	1 cut(s)	305
PshAI	GACNNNNGTC	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	305
Psp6I	CCWGG	2 cut(s)	8, 376
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	2 cut(s)	8, 376
PspN4I	GGNNCC	6 cut(s)	115, 260, 280, 306, 359, 415
PspPI	GGNCC	4 cut(s)	278, 305, 358, 374
PspPPI	RGGWCCY	1 cut(s)	305
PstI	CTGCAG	1 cut(s)	156
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	426
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	3 cut(s)	152, 155, 390
Sau3AI	GATC	1 cut(s)	472
Sau96I	GGNCC	4 cut(s)	278, 305, 358, 374
ScrFI	CCNGG	3 cut(s)	10, 362, 378
SduI	GDGCHC	1 cut(s)	405
SetI	ASST	6 cut(s)	159, 198, 228, 264, 310, 444
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	152
SfoI	GGCGCC	1 cut(s)	415
SgrAI	CRCCGGYG	1 cut(s)	116
SinI	GGWCC	4 cut(s)	278, 305, 358, 374
Sse9I	AATT	3 cut(s)	53, 202, 213
SsiI	CCGC	1 cut(s)	390
SspDI	GGCGCC	1 cut(s)	413
SspMI	CTAG	3 cut(s)	309, 371, 478
StyD4I	CCNGG	3 cut(s)	8, 360, 376
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	2 cut(s)	5, 240
TasI	AATT	3 cut(s)	53, 202, 213
TauI	GCSGC	1 cut(s)	392
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	1 cut(s)	297
TseI	GCWGC	2 cut(s)	151, 154
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	1 cut(s)	297
VpaK11BI	GGWCC	4 cut(s)	278, 305, 358, 374
XapI	RAATTY	1 cut(s)	213
XcmI	CCANNNNNNNNNTGG	2 cut(s)	107, 289
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	3 cut(s)	309, 371, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.