Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005810.1

Orthogroup ID

OG0031345

Physical Location & Seq

Genomic Coordinates Reverse (-)

19070 .. 19896

Gene Structure 827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005810.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgtcgaccagggacggccgtcatcatcttcgtcctcggcgaatagggcatcaattcttattctcactctctgtgtgtttgcaaatcggcactgatggccaagaccattctggcaccggcgaggccagttacatcggtagccacaccatgctgcagcttttactcggtggcttcagcaccgtcgtcgttgacaaccttgacaattcctctgaaattgctattaaccttgtcagagaactcgctggggattttggcaggaacctctcgtttcacaagccgacgatcggtgacggaattccggctaccggaattcgggggaagtctcctatggcttctctctgttccattttctttctatgtgataaaggagggagggcaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0003978 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005829 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0022622 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00052 ko00520 ko01100 map00052 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

127

Amino Acids

13.66

Weight (kDa)

8.59

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031345)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005573.1_g000012 Rmu_sc0005810.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	5
AcoI	YGGCCR	2 cut(s)	16, 97
AcsI	RAATTY	2 cut(s)	294, 309
AcuI	CTGAAG	1 cut(s)	157
AfiI	CCNNNNNNNGG	3 cut(s)	284, 305, 312
AjnI	CCWGG	1 cut(s)	8
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw26I	GTCTC	1 cut(s)	327
AoxI	GGCC	3 cut(s)	16, 97, 123
ApeKI	GCWGC	2 cut(s)	151, 154
ApoI	RAATTY	2 cut(s)	294, 309
AsuHPI	GGTGA	1 cut(s)	299
BalI	TGGCCA	1 cut(s)	99
BanI	GGYRCC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	138, 166
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	2 cut(s)	3, 31
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BciT130I	CCWGG	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	327
BfmI	CTRYAG	1 cut(s)	152
BisI	GCNGC	2 cut(s)	152, 155
BlsI	GCNGC	2 cut(s)	153, 156
Bme1390I	CCNGG	1 cut(s)	10
BmiI	GGNNCC	2 cut(s)	115, 260
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	1 cut(s)	58
BoxI	GACNNNNGTC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	9, 35
BsaWI	WCCGGW	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	3 cut(s)	284, 305, 312
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	2 cut(s)	9, 35
BseLI	CCNNNNNNNGG	3 cut(s)	284, 305, 312
BseNI	ACTGG	1 cut(s)	126
BseX3I	CGGCCG	1 cut(s)	16
BseXI	GCAGC	2 cut(s)	138, 166
BseYI	CCCAGC	1 cut(s)	242
Bsh1285I	CGRYCG	2 cut(s)	19, 285
BshFI	GGCC	3 cut(s)	18, 99, 125
BshNI	GGYRCC	1 cut(s)	113
BsiEI	CGRYCG	2 cut(s)	19, 285
BsiSI	CCGG	3 cut(s)	117, 299, 306
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	3 cut(s)	284, 305, 312
BsmAI	GTCTC	1 cut(s)	327
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	3 cut(s)	18, 99, 125
Bsp143I	GATC	1 cut(s)	282
BspANI	GGCC	3 cut(s)	18, 99, 125
BspLI	GGNNCC	2 cut(s)	115, 260
BspMAI	CTGCAG	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	126
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	2 cut(s)	9, 35
BssMI	GATC	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	1 cut(s)	181
BstKTI	GATC	1 cut(s)	285
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	282
BstMCI	CGRYCG	2 cut(s)	19, 285
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 96
BstNI	CCWGG	1 cut(s)	10
BstPAI	GACNNNNGTC	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	152
BstV1I	GCAGC	2 cut(s)	138, 166
BstZI	CGGCCG	1 cut(s)	16
BsuRI	GGCC	3 cut(s)	18, 99, 125
BtsIMutI	CAGTG	1 cut(s)	90
Cfr10I	RCCGGY	1 cut(s)	116
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	9 cut(s)	18, 99, 125, 141, 157, 171, 277, 302, 332
CviKI_1	RGCY	9 cut(s)	18, 99, 125, 141, 157, 171, 277, 302, 332
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
EaeI	YGGCCR	2 cut(s)	16, 97
EagI	CGGCCG	1 cut(s)	16
EclXI	CGGCCG	1 cut(s)	16
Eco52I	CGGCCG	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	157
EcoRI	GAATTC	2 cut(s)	294, 309
EcoRII	CCWGG	1 cut(s)	8
FaeI	CATG	1 cut(s)	151
FaiI	YATR	3 cut(s)	149, 329, 358
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	1 cut(s)	147
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	152, 155
Fsp4HI	GCNGC	2 cut(s)	152, 155
GluI	GCNGC	2 cut(s)	152, 155
GsaI	CCCAGC	1 cut(s)	246
HaeIII	GGCC	3 cut(s)	18, 99, 125
HapII	CCGG	3 cut(s)	117, 299, 306
Hin1II	CATG	1 cut(s)	151
HincII	GTYRAC	2 cut(s)	6, 190
HindII	GTYRAC	2 cut(s)	6, 190
HpaII	CCGG	3 cut(s)	117, 299, 306
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	6, 190
Hpy188I	TCNGA	2 cut(s)	211, 233
Hpy8I	GTNNAC	2 cut(s)	6, 190
Hpy99I	CGWCG	3 cut(s)	185, 188, 283
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	2 cut(s)	82, 154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 96
Hsp92II	CATG	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	282
LpnPI	CCDG	8 cut(s)	22, 96, 130, 139, 228, 241, 312, 319
Lsp1109I	GCAGC	2 cut(s)	138, 166
LweI	GCATC	1 cut(s)	58
MaeIII	GTNAC	2 cut(s)	128, 287
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	1 cut(s)	20
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	5 cut(s)	53, 202, 213, 294, 309
MluNI	TGGCCA	1 cut(s)	99
MnlI	CCTC	6 cut(s)	45, 115, 217, 272, 362, 366
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	1 cut(s)	222
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	3 cut(s)	117, 299, 306
MspR9I	CCNGG	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	2 cut(s)	46, 96
NdeII	GATC	1 cut(s)	282
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	2 cut(s)	115, 260
NmeAIII	GCCGAG	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	153, 156
Ple19I	CGATCG	1 cut(s)	285
PshAI	GACNNNNGTC	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	8
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	115, 260
PstI	CTGCAG	1 cut(s)	156
PvuI	CGATCG	1 cut(s)	285
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	2 cut(s)	152, 155
Sau3AI	GATC	1 cut(s)	282
ScrFI	CCNGG	1 cut(s)	10
SetI	ASST	4 cut(s)	159, 198, 228, 264
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	152
SgrAI	CRCCGGYG	1 cut(s)	116
Sse9I	AATT	5 cut(s)	53, 202, 213, 294, 309
StyD4I	CCNGG	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	5
TasI	AATT	5 cut(s)	53, 202, 213, 294, 309
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	2 cut(s)	151, 154
Tsp45I	GTSAC	1 cut(s)	287
TspGWI	ACGGA	1 cut(s)	306
TspRI	CASTG	1 cut(s)	97
XapI	RAATTY	2 cut(s)	294, 309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.