Rmu_sc0005745.1_g000041

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005745.1
OG0031353
Physical Location & Seq
Forward (+)
157920 .. 159023
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005745.1_g000041.1.cds

Sequence Viewer

Length: 921 bp
atggaggattacttcatcgaatatccaatttttgaggaagttgaatttcggaagaggtacagaatgcgaagatcagtctttaatctcatcatggagagcctttgcaaccacgatcggttctggcaccaaaaacccgattgctctggcaaaatgagacttctaccccaacaaaaaatgacaggtgcctttcgtatgcttgcatatggtgcagctgccgatcaatgtatcgaaataacgaggatggacgaatccaccacattggaatgtttgaagaagttctgtcaacaagttgaagctctttactcagagtggtaccttcgcactccgacaccggtagacctccacaggcttctccaaagaggagataagcatggttttccggacatgattggaagcattgatttggcgtcctacgacacatggatatggcatgcatttttcagaactccgggagctcaaaatgacatcaacgtgctcggacagtctaaagtgttccaacgtgtcatctctagaagtgctccttcagtgacgttcaaggccaacgacataacattttccaacccctactacctagttgatggaatttaccctcggtggtcaacattcgtcaaaacaattcacaatccaaggggttttgcggagaaattatttgccaaaaagcaaaaagcatatcgaaaagatgtggaaagatgttttggtattcttcaatctcgttttgcgatactacgtcacgatgacttcatagagcctaacaaaattgacaacatgaaatcggaaggggcaaacgtctatgattgtcccttggaccgtgaaggacgtcctattcctttccagccacttggaagagacggacaaaatcttccacagctcattgaccgtgtggagcaacttcattcggcctatctccacaagactctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

306

Amino Acids

35.97

Weight (kDa)

8.73

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031353)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005745.1_g000041 Rmu_sc0006567.1_g000012

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 820
Acc65I GGTACC 1 cut(s) 312
AccB1I GGYRCC 3 cut(s) 123, 182, 312
AccI GTMKAC 1 cut(s) 336
AccIII TCCGGA 1 cut(s) 379
AciI CCGC 1 cut(s) 638
AcsI RAATTY 2 cut(s) 44, 582
AcuI CTGAAG 1 cut(s) 507
AcyI GRCGYC 2 cut(s) 407, 817
AfaI GTAC 2 cut(s) 59, 314
AflIII ACRYGT 1 cut(s) 499
AgeI ACCGGT 1 cut(s) 331
AgsI TTSAA 5 cut(s) 44, 271, 293, 535, 707
AjuI GAANNNNNNNTTGG 2 cut(s) 678, 710
AluBI AGCT 4 cut(s) 212, 296, 455, 868
AluI AGCT 4 cut(s) 212, 296, 455, 868
Alw21I GWGCWC 3 cut(s) 457, 477, 520
Alw26I GTCTC 2 cut(s) 148, 840
Aor13HI TCCGGA 1 cut(s) 379
AoxI GGCC 2 cut(s) 537, 897
ApeKI GCWGC 2 cut(s) 209, 212
ApoI RAATTY 2 cut(s) 44, 582
AsiGI ACCGGT 1 cut(s) 331
Asp700I GAANNNNTTC 1 cut(s) 275
Asp718I GGTACC 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 805
AsuC2I CCSGG 1 cut(s) 450
AvaII GGWCC 1 cut(s) 805
BanI GGYRCC 3 cut(s) 123, 182, 312
BanII GRGCYC 1 cut(s) 457
Bbv12I GWGCWC 3 cut(s) 457, 477, 520
BbvI GCAGC 2 cut(s) 199, 221
BccI CCATC 2 cut(s) 235, 572
BcnI CCSGG 1 cut(s) 450
BcoDI GTCTC 2 cut(s) 148, 840
BfaI CTAG 2 cut(s) 510, 572
BisI GCNGC 2 cut(s) 210, 213
BlsI GCNGC 2 cut(s) 211, 214
Bme1390I CCNGG 1 cut(s) 450
Bme18I GGWCC 1 cut(s) 805
BmgT120I GGNCC 1 cut(s) 805
BmiI GGNNCC 3 cut(s) 125, 184, 314
BmrFI CCNGG 1 cut(s) 450
BpuMI CCSGG 1 cut(s) 450
BsaHI GRCGYC 2 cut(s) 407, 817
BsaJI CCNNGG 3 cut(s) 590, 626, 801
BsaWI WCCGGW 2 cut(s) 331, 379
Bse118I RCCGGY 1 cut(s) 331
BseAI TCCGGA 1 cut(s) 379
BseDI CCNNGG 3 cut(s) 590, 626, 801
BseGI GGATG 1 cut(s) 246
BseMII CTCAG 1 cut(s) 318
BseRI GAGGAG 1 cut(s) 375
BseXI GCAGC 2 cut(s) 199, 221
BsgI GTGCAG 1 cut(s) 228
Bsh1285I CGRYCG 1 cut(s) 115
BshFI GGCC 2 cut(s) 539, 899
BshNI GGYRCC 3 cut(s) 123, 182, 312
BshTI ACCGGT 1 cut(s) 331
BsiEI CGRYCG 1 cut(s) 115
BsiHKAI GWGCWC 3 cut(s) 457, 477, 520
BsiSI CCGG 3 cut(s) 332, 380, 449
BslFI GGGAC 1 cut(s) 783
BsmAI GTCTC 2 cut(s) 148, 840
BsmBI CGTCTC 1 cut(s) 840
BsmFI GGGAC 1 cut(s) 783
BsmI GAATGC 1 cut(s) 69
BsnI GGCC 2 cut(s) 539, 899
Bsp1286I GDGCHC 3 cut(s) 457, 477, 520
Bsp13I TCCGGA 1 cut(s) 379
Bsp143I GATC 3 cut(s) 71, 112, 217
BspACI CCGC 1 cut(s) 638
BspANI GGCC 2 cut(s) 539, 899
BspCNI CTCAG 1 cut(s) 317
BspEI TCCGGA 1 cut(s) 379
BspLI GGNNCC 3 cut(s) 125, 184, 314
BspT107I GGYRCC 3 cut(s) 123, 182, 312
BsrFI RCCGGY 1 cut(s) 331
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 3 cut(s) 590, 626, 801
BssMI GATC 3 cut(s) 71, 112, 217
BssNI GRCGYC 2 cut(s) 407, 817
BssT1I CCWWGG 2 cut(s) 626, 801
Bst4CI ACNGT 3 cut(s) 483, 809, 878
Bst6I CTCTTC 2 cut(s) 47, 838
BstACI GRCGYC 2 cut(s) 407, 817
BstAPI GCANNNNNTGC 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 198, 432
BstDEI CTNAG 1 cut(s) 304
BstF5I GGATG 1 cut(s) 246
BstKTI GATC 3 cut(s) 74, 115, 220
BstMAI GTCTC 2 cut(s) 148, 840
BstMBI GATC 3 cut(s) 71, 112, 217
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 434
BstSCI CCNGG 1 cut(s) 448
BstV1I GCAGC 2 cut(s) 199, 221
BstXI CCANNNNNNTGG 2 cut(s) 259, 839
BsuRI GGCC 2 cut(s) 539, 899
BtsCI GGATG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 531
Cac8I GCNNGC 2 cut(s) 198, 432
Cfr10I RCCGGY 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 805
CseI GACGC 1 cut(s) 396
Csp6I GTAC 2 cut(s) 58, 313
CspAI ACCGGT 1 cut(s) 331
CviAII CATG 6 cut(s) 91, 371, 385, 420, 431, 766
CviQI GTAC 2 cut(s) 58, 313
DdeI CTNAG 1 cut(s) 304
DpnI GATC 3 cut(s) 73, 114, 219
DpnII GATC 3 cut(s) 71, 112, 217
Eam1104I CTCTTC 2 cut(s) 47, 838
EarI CTCTTC 2 cut(s) 47, 838
Ecl136II GAGCTC 1 cut(s) 455
Eco130I CCWWGG 2 cut(s) 626, 801
Eco24I GRGCYC 1 cut(s) 457
Eco47I GGWCC 1 cut(s) 805
Eco53kI GAGCTC 1 cut(s) 455
Eco57I CTGAAG 1 cut(s) 507
EcoICRI GAGCTC 1 cut(s) 455
EcoT14I CCWWGG 2 cut(s) 626, 801
EcoT22I ATGCAT 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 457
ErhI CCWWGG 2 cut(s) 626, 801
Esp3I CGTCTC 1 cut(s) 840
FaeI CATG 6 cut(s) 94, 374, 388, 423, 434, 769
FalI AAGNNNNNCTT 2 cut(s) 505, 537
FaqI GGGAC 1 cut(s) 783
FatI CATG 6 cut(s) 90, 370, 384, 419, 430, 765
FauNDI CATATG 1 cut(s) 202
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 2 cut(s) 210, 213
FokI GGATG 1 cut(s) 253
FriOI GRGCYC 1 cut(s) 457
Fsp4HI GCNGC 2 cut(s) 210, 213
FspBI CTAG 2 cut(s) 510, 572
GluI GCNGC 2 cut(s) 210, 213
HaeIII GGCC 2 cut(s) 539, 899
HapII CCGG 3 cut(s) 332, 380, 449
HgaI GACGC 1 cut(s) 396
Hin1I GRCGYC 2 cut(s) 407, 817
Hin1II CATG 6 cut(s) 94, 374, 388, 423, 434, 769
HincII GTYRAC 2 cut(s) 284, 600
HindII GTYRAC 2 cut(s) 284, 600
HinfI GANTC 2 cut(s) 248, 913
HpaII CCGG 3 cut(s) 332, 380, 449
Hpy166II GTNNAC 3 cut(s) 284, 337, 600
Hpy188I TCNGA 6 cut(s) 51, 307, 327, 443, 479, 775
Hpy188III TCNNGA 3 cut(s) 380, 510, 731
Hpy8I GTNNAC 3 cut(s) 284, 337, 600
HpyAV CCTTC 4 cut(s) 326, 531, 770, 806
HpyCH4III ACNGT 3 cut(s) 483, 809, 878
HpyCH4IV ACGT 6 cut(s) 471, 499, 530, 727, 786, 817
HpyCH4V TGCA 4 cut(s) 105, 200, 209, 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 1 cut(s) 304
HpySE526I ACGT 6 cut(s) 471, 499, 530, 727, 786, 817
Hsp92I GRCGYC 2 cut(s) 407, 817
Hsp92II CATG 6 cut(s) 94, 374, 388, 423, 434, 769
Kpn2I TCCGGA 1 cut(s) 379
KpnI GGTACC 1 cut(s) 316
Kzo9I GATC 3 cut(s) 71, 112, 217
LmnI GCTCC 3 cut(s) 452, 523, 883
LpnPI CCDG 8 cut(s) 106, 129, 165, 331, 345, 393, 462, 845
Lsp1109I GCAGC 2 cut(s) 199, 221
MaeI CTAG 2 cut(s) 510, 572
MaeII ACGT 6 cut(s) 471, 499, 530, 727, 786, 817
MaeIII GTNAC 2 cut(s) 526, 728
MalI GATC 3 cut(s) 73, 114, 219
MboI GATC 3 cut(s) 71, 112, 217
MboII GAAGA 6 cut(s) 64, 81, 283, 695, 851, 855
MhlI GDGCHC 3 cut(s) 457, 477, 520
MluCI AATT 6 cut(s) 27, 44, 582, 615, 644, 756
MlyI GAGTC 1 cut(s) 907
MmeI TCCRAC 3 cut(s) 350, 520, 582
MnlI CCTC 6 cut(s) 28, 48, 231, 350, 353, 600
Mph1103I ATGCAT 1 cut(s) 436
MroI TCCGGA 1 cut(s) 379
MroXI GAANNNNTTC 1 cut(s) 275
MseI TTAA 2 cut(s) 81, 919
MslI CAYNNNNRTG 3 cut(s) 262, 424, 470
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 3 cut(s) 332, 380, 449
MspR9I CCNGG 1 cut(s) 450
Mva1269I GAATGC 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 206
NciI CCSGG 1 cut(s) 450
NdeI CATATG 1 cut(s) 202
NdeII GATC 3 cut(s) 71, 112, 217
NlaIII CATG 6 cut(s) 94, 374, 388, 423, 434, 769
NlaIV GGNNCC 3 cut(s) 125, 184, 314
NmuCI GTSAC 2 cut(s) 526, 728
NsiI ATGCAT 1 cut(s) 436
NspI RCATGY 1 cut(s) 434
PaeI GCATGC 1 cut(s) 434
PctI GAATGC 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 1 cut(s) 248
PfoI TCCNGGA 1 cut(s) 448
PinAI ACCGGT 1 cut(s) 331
PkrI GCNGC 2 cut(s) 211, 214
Ple19I CGATCG 1 cut(s) 115
PleI GAGTC 1 cut(s) 907
PpsI GAGTC 1 cut(s) 907
Psp124BI GAGCTC 1 cut(s) 457
PspN4I GGNNCC 3 cut(s) 125, 184, 314
PspPI GGNCC 1 cut(s) 805
PvuI CGATCG 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 2 cut(s) 59, 314
RsaNI GTAC 2 cut(s) 58, 313
RseI CAYNNNNRTG 3 cut(s) 262, 424, 470
SacI GAGCTC 1 cut(s) 457
SaqAI TTAA 2 cut(s) 81, 919
SatI GCNGC 2 cut(s) 210, 213
Sau3AI GATC 3 cut(s) 71, 112, 217
Sau96I GGNCC 1 cut(s) 805
SchI GAGTC 1 cut(s) 907
ScrFI CCNGG 1 cut(s) 450
SduI GDGCHC 3 cut(s) 457, 477, 520
SinI GGWCC 1 cut(s) 805
SmiMI CAYNNNNRTG 3 cut(s) 262, 424, 470
SphI GCATGC 1 cut(s) 434
Sse9I AATT 6 cut(s) 27, 44, 582, 615, 644, 756
SsiI CCGC 1 cut(s) 638
SspMI CTAG 2 cut(s) 510, 572
SstI GAGCTC 1 cut(s) 457
StyD4I CCNGG 1 cut(s) 448
StyI CCWWGG 2 cut(s) 626, 801
TaaI ACNGT 3 cut(s) 483, 809, 878
TaiI ACGT 6 cut(s) 474, 502, 533, 730, 789, 820
TaqI TCGA 3 cut(s) 18, 228, 673
TasI AATT 6 cut(s) 27, 44, 582, 615, 644, 756
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 2 cut(s) 81, 919
Tru9I TTAA 2 cut(s) 81, 919
TscAI CASTG 1 cut(s) 531
TseFI GTSAC 2 cut(s) 526, 728
TseI GCWGC 2 cut(s) 209, 212
Tsp45I GTSAC 2 cut(s) 526, 728
TspDTI ATGAA 4 cut(s) 4, 730, 782, 881
TspGWI ACGGA 1 cut(s) 864
TspRI CASTG 1 cut(s) 531
VpaK11BI GGWCC 1 cut(s) 805
XapI RAATTY 2 cut(s) 44, 582
XbaI TCTAGA 1 cut(s) 509
XceI RCATGY 1 cut(s) 434
XmiI GTMKAC 1 cut(s) 336
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 2 cut(s) 510, 572
ZraI GACGTC 1 cut(s) 818
Zsp2I ATGCAT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.