Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005758.1

Orthogroup ID

OG0025600

Physical Location & Seq

Genomic Coordinates Reverse (-)

1988 .. 4304

Gene Structure 2317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgaacaatggaatctcacgacacgacacgagtttcttaggtggagttcacatggaatcaaagattgaaaggcatggactttgttctcaatatgaaactagggacgtggttttattgtttaaacagggtagcgaattaaggtttagaggaaaggtgaaggattgggccgtgactctcaccaaaaggcccaattgttattcgtcatccacgtataaaatccaagctcaaagccgaaaccctagtccttcttattgctccgtctctcctccaactctgaccgatccagagttgaagcaggtaatggctccagcacagccgaaaaccgggctctttgtgggattgaacaaagggcacgtaaccaccaagaaagaattggcaccacgcccttctgatcgcaaaggaaaaaccagtaagagggtgcactttgttaggaacttgatccgtgaagttgctgggtttgcaccgtatgagaagagaatcactgagcttttgaaggttggcaaggacaagcgtgcactgaaggtagctaaaagaaagttgggaacccacaagagggcaaagaagaagcgtgaggagatgtctaatgtccttcgcaagatgaggtctggtggtggagctactgagaagaagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L36e

Protein Analysis

211

Amino Acids

23.82

Weight (kDa)

10.48

Isoelectric Point (pI)

50.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L36e	PF01158	108 - 201	1.5e-42	Ribosomal protein L36e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0025600)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005758.1_g000002 Rmu_sc0024583.1_g000003
rosa_samantha	Rh1AG427600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	286
AccB1I	GGYRCC	1 cut(s)	376
AclWI	GGATC	2 cut(s)	275, 433
AcuI	CTGAAG	1 cut(s)	539
AfiI	CCNNNNNNNGG	4 cut(s)	323, 414, 552, 553
AgsI	TTSAA	4 cut(s)	68, 292, 343, 493
AjiI	CACGTC	1 cut(s)	106
AluBI	AGCT	4 cut(s)	224, 487, 527, 617
AluI	AGCT	4 cut(s)	224, 487, 527, 617
Alw21I	GWGCWC	2 cut(s)	423, 517
Alw26I	GTCTC	1 cut(s)	265
Alw44I	GTGCAC	2 cut(s)	419, 513
AlwI	GGATC	2 cut(s)	275, 433
AoxI	GGCC	2 cut(s)	165, 185
ApaLI	GTGCAC	2 cut(s)	419, 513
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
AspS9I	GGNCC	2 cut(s)	165, 186
AsuC2I	CCSGG	1 cut(s)	325
AsuHPI	GGTGA	2 cut(s)	166, 169
BaeGI	GKGCMC	3 cut(s)	354, 423, 517
BanI	GGYRCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	330
BauI	CACGAG	1 cut(s)	28
Bbv12I	GWGCWC	2 cut(s)	423, 517
BceAI	ACGGC	1 cut(s)	152
BcnI	CCSGG	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	2 cut(s)	99, 240
BfuAI	ACCTGC	1 cut(s)	286
Bme1390I	CCNGG	1 cut(s)	325
BmgBI	CACGTC	1 cut(s)	106
BmgT120I	GGNCC	2 cut(s)	165, 186
BmiI	GGNNCC	3 cut(s)	306, 378, 544
BmrFI	CCNGG	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	291
BpuMI	CCSGG	1 cut(s)	325
BsaAI	YACGTR	2 cut(s)	210, 355
Bsc4I	CCNNNNNNNGG	4 cut(s)	323, 414, 552, 553
Bse1I	ACTGG	1 cut(s)	408
BseGI	GGATG	1 cut(s)	203
BseLI	CCNNNNNNNGG	4 cut(s)	323, 414, 552, 553
BseMII	CTCAG	2 cut(s)	474, 612
BseNI	ACTGG	1 cut(s)	408
BseRI	GAGGAG	2 cut(s)	255, 587
BseSI	GKGCMC	3 cut(s)	354, 423, 517
BseYI	CCCAGC	1 cut(s)	452
BshFI	GGCC	2 cut(s)	167, 187
BshNI	GGYRCC	1 cut(s)	376
BsiHKAI	GWGCWC	2 cut(s)	423, 517
BsiSI	CCGG	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	4 cut(s)	323, 414, 552, 553
BsmAI	GTCTC	1 cut(s)	265
BsmBI	CGTCTC	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	2 cut(s)	167, 187
Bsp1286I	GDGCHC	4 cut(s)	330, 354, 423, 517
Bsp143I	GATC	3 cut(s)	280, 391, 438
BspANI	GGCC	2 cut(s)	167, 187
BspCNI	CTCAG	2 cut(s)	475, 613
BspLI	GGNNCC	3 cut(s)	306, 378, 544
BspMI	ACCTGC	1 cut(s)	286
BspPI	GGATC	2 cut(s)	275, 433
BspT107I	GGYRCC	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	408
BssMI	GATC	3 cut(s)	280, 391, 438
BssSI	CACGAG	1 cut(s)	28
Bst2BI	CACGAG	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	465
Bst6I	CTCTTC	1 cut(s)	467
BstBAI	YACGTR	2 cut(s)	210, 355
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	3 cut(s)	37, 483, 621
BstF5I	GGATG	1 cut(s)	203
BstKTI	GATC	3 cut(s)	283, 394, 441
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	3 cut(s)	280, 391, 438
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstSCI	CCNGG	1 cut(s)	323
BstSLI	GKGCMC	3 cut(s)	354, 423, 517
BsuRI	GGCC	2 cut(s)	167, 187
BtrI	CACGTC	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	203
BtsIMutI	CAGTG	2 cut(s)	480, 515
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	513
Cfr13I	GGNCC	2 cut(s)	165, 186
CviAII	CATG	2 cut(s)	52, 74
DdeI	CTNAG	3 cut(s)	37, 483, 621
DpnI	GATC	3 cut(s)	282, 393, 440
DpnII	GATC	3 cut(s)	280, 391, 438
DraI	TTTAAA	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	467
EarI	CTCTTC	1 cut(s)	467
Eco24I	GRGCYC	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	539
EcoT38I	GRGCYC	1 cut(s)	330
Esp3I	CGTCTC	1 cut(s)	265
FaeI	CATG	2 cut(s)	55, 77
FaiI	YATR	5 cut(s)	53, 75, 93, 213, 468
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	2 cut(s)	51, 73
FokI	GGATG	1 cut(s)	190
FriOI	GRGCYC	1 cut(s)	330
FspBI	CTAG	2 cut(s)	99, 240
GsaI	CCCAGC	1 cut(s)	456
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	2 cut(s)	167, 187
HapII	CCGG	1 cut(s)	324
Hin1II	CATG	2 cut(s)	55, 77
HinfI	GANTC	4 cut(s)	12, 56, 172, 477
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	2 cut(s)	166, 169
Hpy166II	GTNNAC	3 cut(s)	49, 421, 515
Hpy188I	TCNGA	2 cut(s)	276, 391
Hpy188III	TCNNGA	2 cut(s)	18, 284
Hpy8I	GTNNAC	3 cut(s)	49, 421, 515
HpyAV	CCTTC	6 cut(s)	151, 255, 396, 487, 514, 599
HpyCH4III	ACNGT	1 cut(s)	465
HpyCH4IV	ACGT	3 cut(s)	105, 209, 354
HpyCH4V	TGCA	3 cut(s)	421, 461, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	3 cut(s)	37, 483, 621
HpySE526I	ACGT	3 cut(s)	105, 209, 354
Hsp92II	CATG	2 cut(s)	55, 77
Kzo9I	GATC	3 cut(s)	280, 391, 438
LmnI	GCTCC	3 cut(s)	260, 310, 614
LpnPI	CCDG	8 cut(s)	110, 281, 297, 321, 337, 421, 438, 591
MaeI	CTAG	2 cut(s)	99, 240
MaeII	ACGT	3 cut(s)	105, 209, 354
MaeIII	GTNAC	2 cut(s)	169, 355
MalI	GATC	3 cut(s)	282, 393, 440
MboI	GATC	3 cut(s)	280, 391, 438
MboII	GAAGA	2 cut(s)	484, 574
MfeI	CAATTG	1 cut(s)	190
MhlI	GDGCHC	4 cut(s)	330, 354, 423, 517
MluCI	AATT	3 cut(s)	134, 190, 371
MlyI	GAGTC	1 cut(s)	166
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	6 cut(s)	140, 276, 408, 546, 565, 594
MseI	TTAA	2 cut(s)	120, 137
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	325
MssI	GTTTAAAC	1 cut(s)	121
MunI	CAATTG	1 cut(s)	190
MwoI	GCNNNNNNNGC	1 cut(s)	458
NciI	CCSGG	1 cut(s)	325
NdeII	GATC	3 cut(s)	280, 391, 438
NlaIII	CATG	2 cut(s)	55, 77
NlaIV	GGNNCC	3 cut(s)	306, 378, 544
NmuCI	GTSAC	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PfeI	GAWTC	3 cut(s)	12, 56, 477
PleI	GAGTC	1 cut(s)	166
PmeI	GTTTAAAC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	166
Ppu21I	YACGTR	2 cut(s)	210, 355
PspFI	CCCAGC	1 cut(s)	452
PspN4I	GGNNCC	3 cut(s)	306, 378, 544
PspPI	GGNCC	2 cut(s)	165, 186
SaqAI	TTAA	2 cut(s)	120, 137
Sau3AI	GATC	3 cut(s)	280, 391, 438
Sau96I	GGNCC	2 cut(s)	165, 186
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	4 cut(s)	330, 354, 423, 517
Sse9I	AATT	3 cut(s)	134, 190, 371
SspMI	CTAG	2 cut(s)	99, 240
StyD4I	CCNGG	1 cut(s)	323
TaaI	ACNGT	1 cut(s)	465
TaiI	ACGT	3 cut(s)	108, 212, 357
TaqII	GACCGA	1 cut(s)	293
TasI	AATT	3 cut(s)	134, 190, 371
TfiI	GAWTC	3 cut(s)	12, 56, 477
Tru1I	TTAA	2 cut(s)	120, 137
Tru9I	TTAA	2 cut(s)	120, 137
TscAI	CASTG	2 cut(s)	487, 522
TseFI	GTSAC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	2 cut(s)	17, 108
TspGWI	ACGGA	2 cut(s)	247, 431
TspRI	CASTG	2 cut(s)	487, 522
VneI	GTGCAC	2 cut(s)	419, 513
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XspI	CTAG	2 cut(s)	99, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.