Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0025600

Physical Location & Seq

Genomic Coordinates Forward (+)

65565144 .. 65567140

Gene Structure 1997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG427600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAGACAAGATTGGGCCGTGACTCTCACCAAAAGGCCCAATTGTTATTCGTCATCCACATATAAAATCCAAGCTCAAAGCCGAAACCCTAGTCCTTCTTATTGCTCCGTCTCTCCTCCAACTCTGACCGATCCAGAGTTGAAGCAGGTAATGGCTCCAGCACAGCCGAAAACCGGGCTCTTTGTGGGATTGAACAAAGGGCACGTAACCACCAAGAAAGAATTGGCTCCACGCCCTTCTGATCGCAAAGGAAAAACCAGTAAGAGGGTGCACTTTGTTAGGAACTTGATCCGTGAAGTTGCTGGGTTTGCACCGTATGAGAAGAGAATCACTGAGCTTTTGAAGGTTGGCAAGGACAAGCGTGCACTGAAGGTAGCTAAAAGAAAGTTGGGAACCCACAAGAGGGCAAAGAAGAAGCGTGAGGAGATGTCTAATGTCCTTCGCAAGATGAGGTCTGGTGGTGGAGCTACTGAGAAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L36e

Protein Analysis

161

Amino Acids

18.16

Weight (kDa)

10.71

Isoelectric Point (pI)

59.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L36e	PF01158	58 - 151	7.5e-43	Ribosomal protein L36e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025600)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005758.1_g000002 Rmu_sc0024583.1_g000003
rosa_samantha	Rh1AG427600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	136
AclWI	GGATC	2 cut(s)	125, 283
AcuI	CTGAAG	1 cut(s)	389
AfiI	CCNNNNNNNGG	4 cut(s)	173, 264, 402, 403
AgsI	TTSAA	3 cut(s)	142, 193, 343
AluBI	AGCT	4 cut(s)	74, 337, 377, 467
AluI	AGCT	4 cut(s)	74, 337, 377, 467
Alw21I	GWGCWC	2 cut(s)	273, 367
Alw26I	GTCTC	1 cut(s)	115
Alw44I	GTGCAC	2 cut(s)	269, 363
AlwI	GGATC	2 cut(s)	125, 283
AoxI	GGCC	2 cut(s)	15, 35
ApaLI	GTGCAC	2 cut(s)	269, 363
ArsI	GACNNNNNNTTYG	2 cut(s)	76, 108
AspS9I	GGNCC	2 cut(s)	15, 36
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	19
BaeGI	GKGCMC	3 cut(s)	204, 273, 367
BanII	GRGCYC	1 cut(s)	180
Bbv12I	GWGCWC	2 cut(s)	273, 367
BceAI	ACGGC	1 cut(s)	2
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	1 cut(s)	90
BfuAI	ACCTGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	15, 36
BmiI	GGNNCC	3 cut(s)	156, 228, 394
BmrFI	CCNGG	1 cut(s)	175
BpmI	CTGGAG	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	175
BsaAI	YACGTR	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	4 cut(s)	173, 264, 402, 403
Bse1I	ACTGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	4 cut(s)	173, 264, 402, 403
BseMII	CTCAG	2 cut(s)	324, 462
BseNI	ACTGG	1 cut(s)	258
BseRI	GAGGAG	2 cut(s)	105, 437
BseSI	GKGCMC	3 cut(s)	204, 273, 367
BseYI	CCCAGC	1 cut(s)	302
BshFI	GGCC	2 cut(s)	17, 37
BsiHKAI	GWGCWC	2 cut(s)	273, 367
BsiSI	CCGG	1 cut(s)	174
BslI	CCNNNNNNNGG	4 cut(s)	173, 264, 402, 403
BsmAI	GTCTC	1 cut(s)	115
BsmBI	CGTCTC	1 cut(s)	115
BsnI	GGCC	2 cut(s)	17, 37
Bsp1286I	GDGCHC	4 cut(s)	180, 204, 273, 367
Bsp143I	GATC	3 cut(s)	130, 241, 288
BspANI	GGCC	2 cut(s)	17, 37
BspCNI	CTCAG	2 cut(s)	325, 463
BspLI	GGNNCC	3 cut(s)	156, 228, 394
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	125, 283
BsrI	ACTGG	1 cut(s)	258
BssMI	GATC	3 cut(s)	130, 241, 288
Bst4CI	ACNGT	1 cut(s)	315
Bst6I	CTCTTC	1 cut(s)	317
BstBAI	YACGTR	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	2 cut(s)	333, 471
BstF5I	GGATG	1 cut(s)	53
BstKTI	GATC	3 cut(s)	133, 244, 291
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	3 cut(s)	130, 241, 288
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	173
BstSLI	GKGCMC	3 cut(s)	204, 273, 367
BsuRI	GGCC	2 cut(s)	17, 37
BtsCI	GGATG	1 cut(s)	53
BtsIMutI	CAGTG	2 cut(s)	330, 365
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	363
Cfr13I	GGNCC	2 cut(s)	15, 36
DdeI	CTNAG	2 cut(s)	333, 471
DpnI	GATC	3 cut(s)	132, 243, 290
DpnII	GATC	3 cut(s)	130, 241, 288
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	389
EcoT38I	GRGCYC	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	115
FaiI	YATR	3 cut(s)	61, 63, 318
FokI	GGATG	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	180
FspBI	CTAG	1 cut(s)	90
GsaI	CCCAGC	1 cut(s)	306
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	17, 37
HapII	CCGG	1 cut(s)	174
HinfI	GANTC	2 cut(s)	22, 327
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	2 cut(s)	271, 365
Hpy188I	TCNGA	2 cut(s)	126, 241
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	2 cut(s)	271, 365
HpyAV	CCTTC	5 cut(s)	105, 246, 337, 364, 449
HpyCH4III	ACNGT	1 cut(s)	315
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	3 cut(s)	271, 311, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	2 cut(s)	333, 471
HpySE526I	ACGT	1 cut(s)	204
Kzo9I	GATC	3 cut(s)	130, 241, 288
LmnI	GCTCC	4 cut(s)	110, 160, 232, 464
LpnPI	CCDG	7 cut(s)	131, 147, 171, 187, 271, 288, 441
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	19, 205
MalI	GATC	3 cut(s)	132, 243, 290
MboI	GATC	3 cut(s)	130, 241, 288
MboII	GAAGA	2 cut(s)	334, 424
MfeI	CAATTG	1 cut(s)	40
MhlI	GDGCHC	4 cut(s)	180, 204, 273, 367
MluCI	AATT	2 cut(s)	40, 221
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	5 cut(s)	126, 258, 396, 415, 444
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	175
MunI	CAATTG	1 cut(s)	40
MwoI	GCNNNNNNNGC	1 cut(s)	308
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	3 cut(s)	130, 241, 288
NlaIV	GGNNCC	3 cut(s)	156, 228, 394
NmuCI	GTSAC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	327
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
Ppu21I	YACGTR	1 cut(s)	205
PspFI	CCCAGC	1 cut(s)	302
PspN4I	GGNNCC	3 cut(s)	156, 228, 394
PspPI	GGNCC	2 cut(s)	15, 36
Sau3AI	GATC	3 cut(s)	130, 241, 288
Sau96I	GGNCC	2 cut(s)	15, 36
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	4 cut(s)	180, 204, 273, 367
SetI	ASST	9 cut(s)	76, 150, 207, 339, 348, 375, 379, 455, 469
Sse9I	AATT	2 cut(s)	40, 221
SspMI	CTAG	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	173
TaaI	ACNGT	1 cut(s)	315
TaiI	ACGT	1 cut(s)	207
TaqII	GACCGA	1 cut(s)	143
TasI	AATT	2 cut(s)	40, 221
TfiI	GAWTC	1 cut(s)	327
TscAI	CASTG	2 cut(s)	337, 372
TseFI	GTSAC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	19
TspGWI	ACGGA	2 cut(s)	97, 281
TspRI	CASTG	2 cut(s)	337, 372
VneI	GTGCAC	2 cut(s)	269, 363
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.