Rmu_sc0005791.1_g000011

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005791.1
OG0031354
Physical Location & Seq
Reverse (-)
61023 .. 62244
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005791.1_g000011.1.cds

Sequence Viewer

Length: 906 bp
atgtatgtgccttatgcctcaaggctgcaagactctctcgaaaacgcctcggaaactcatactccggattggattattcatgagttttaccctcattggttgccaccaatagctacaaagctgctaggcatatcacgagcctatttcagcatcctcaacggtgccgttgtatgcttcttgggcccaacagcacctgatgtaaaagagcgctatgctcctagaactcggccagaagatttcactgtccctcccgagtgggttccttttcctaattccaaattggcttttaggccattcgaagccaagaaatttttcgaggctactgtacaaaacccttcgggcatttcggatcttttgcgctctgagttgacgaccaaagattgtgaactctatctagttcaaagtcgcaaagagatcgagggtgagtggctggatttggctcaggatataattcatccaacacctttagtgcttccagtggggttactgccaccgataatagagcaatctgatgaagacaaggaggataagagctggactataattgtcgactggttgaacaagcaagagaaggggactgttgtttatgttgcgttaggaactgaagtgaatccaagccgagaagacttcacagaattggctctgggattggaactttctgggttgcgctgcctttcttttgggctttgggacaagaaggttggaattgaggtaccgagagatgagcagagtggatcgtttatgagggattcggtggccaagtcactgaaattggttatggtggaggaggatggaaaggcttatagggatggggctaaggaatttagtgcaacattcagagacagagagcttcaagatagatacatcatacatggacacattcttggactatttagaaaagcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

301

Amino Acids

34.27

Weight (kDa)

5.09

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031354)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8516767.1_g000001 Rmu_sc0005791.1_g000011

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 712
AccB1I GGYRCC 2 cut(s) 161, 712
AccI GTMKAC 1 cut(s) 549
AccIII TCCGGA 1 cut(s) 64
AclWI GGATC 2 cut(s) 357, 742
AcoI YGGCCR 2 cut(s) 227, 756
AcsI RAATTY 2 cut(s) 308, 821
AcuI CTGAAG 1 cut(s) 624
AfaI GTAC 2 cut(s) 327, 714
AfeI AGCGCT 1 cut(s) 209
AgsI TTSAA 3 cut(s) 401, 559, 854
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
AluBI AGCT 4 cut(s) 113, 121, 534, 850
AluI AGCT 4 cut(s) 113, 121, 534, 850
Alw26I GTCTC 1 cut(s) 834
AlwI GGATC 2 cut(s) 357, 742
AlwNI CAGNNNCTG 1 cut(s) 194
Ama87I CYCGRG 1 cut(s) 251
Aor13HI TCCGGA 1 cut(s) 64
Aor51HI AGCGCT 1 cut(s) 209
AoxI GGCC 4 cut(s) 181, 227, 290, 756
ApaI GGGCCC 1 cut(s) 185
ApeKI GCWGC 3 cut(s) 25, 121, 669
ApoI RAATTY 2 cut(s) 308, 821
Asp700I GAANNNNTTC 1 cut(s) 311
Asp718I GGTACC 1 cut(s) 712
AspLEI GCGC 3 cut(s) 210, 360, 669
AspS9I GGNCC 2 cut(s) 181, 182
AsuHPI GGTGA 1 cut(s) 434
AsuII TTCGAA 1 cut(s) 297
AvaI CYCGRG 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 185
BalI TGGCCA 1 cut(s) 758
BanI GGYRCC 2 cut(s) 161, 712
BanII GRGCYC 1 cut(s) 185
BauI CACGAG 1 cut(s) 135
BbsI GAAGAC 2 cut(s) 522, 630
BbvI GCAGC 3 cut(s) 12, 108, 656
BccI CCATC 2 cut(s) 785, 803
BceAI ACGGC 1 cut(s) 149
BcgI CGANNNNNNTGC 2 cut(s) 397, 431
BcoDI GTCTC 1 cut(s) 834
BfaI CTAG 3 cut(s) 125, 219, 395
BfoI RGCGCY 1 cut(s) 211
BisI GCNGC 3 cut(s) 26, 122, 670
BlsI GCNGC 3 cut(s) 27, 123, 671
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 2 cut(s) 181, 182
BmiI GGNNCC 4 cut(s) 163, 183, 261, 714
BmsI GCATC 1 cut(s) 159
BpiI GAAGAC 2 cut(s) 522, 630
Bpu10I CCTNAGC 2 cut(s) 441, 816
Bpu14I TTCGAA 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 4
BsaJI CCNNGG 1 cut(s) 48
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 4 cut(s) 46, 76, 232, 262
Bse1I ACTGG 2 cut(s) 476, 557
BseAI TCCGGA 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 4 cut(s) 150, 454, 796, 814
BseMII CTCAG 2 cut(s) 354, 455
BseNI ACTGG 2 cut(s) 476, 557
BseRI GAGGAG 1 cut(s) 800
BseSI GKGCMC 1 cut(s) 185
BseXI GCAGC 3 cut(s) 12, 108, 656
BshFI GGCC 4 cut(s) 183, 229, 292, 758
BshNI GGYRCC 2 cut(s) 161, 712
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 3 cut(s) 230, 589, 704
BsmAI GTCTC 1 cut(s) 834
BsmFI GGGAC 3 cut(s) 230, 589, 704
BsnI GGCC 4 cut(s) 183, 229, 292, 758
BsoBI CYCGRG 1 cut(s) 251
Bsp119I TTCGAA 1 cut(s) 297
Bsp120I GGGCCC 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 185
Bsp13I TCCGGA 1 cut(s) 64
Bsp1407I TGTACA 1 cut(s) 325
Bsp143I GATC 3 cut(s) 349, 414, 734
BspANI GGCC 4 cut(s) 183, 229, 292, 758
BspCNI CTCAG 2 cut(s) 355, 454
BspEI TCCGGA 1 cut(s) 64
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 4 cut(s) 163, 183, 261, 714
BspPI GGATC 2 cut(s) 357, 742
BspT104I TTCGAA 1 cut(s) 297
BspT107I GGYRCC 2 cut(s) 161, 712
BsrGI TGTACA 1 cut(s) 325
BsrI ACTGG 2 cut(s) 476, 557
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 3 cut(s) 349, 414, 734
BssSI CACGAG 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 135
Bst4CI ACNGT 4 cut(s) 161, 244, 325, 580
BstAUI TGTACA 1 cut(s) 325
BstBI TTCGAA 1 cut(s) 297
BstDEI CTNAG 3 cut(s) 363, 441, 816
BstF5I GGATG 4 cut(s) 150, 454, 796, 814
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 3 cut(s) 210, 360, 669
BstKTI GATC 3 cut(s) 352, 417, 737
BstMAI GTCTC 1 cut(s) 834
BstMBI GATC 3 cut(s) 349, 414, 734
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 185
BstV1I GCAGC 3 cut(s) 12, 108, 656
BstV2I GAAGAC 2 cut(s) 522, 630
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BsuRI GGCC 4 cut(s) 183, 229, 292, 758
BtsCI GGATG 4 cut(s) 150, 454, 796, 814
BtsIMutI CAGTG 3 cut(s) 240, 483, 764
CaiI CAGNNNCTG 1 cut(s) 194
CciI TCATGA 1 cut(s) 79
CfoI GCGC 3 cut(s) 210, 360, 669
Cfr13I GGNCC 2 cut(s) 181, 182
Csp6I GTAC 2 cut(s) 326, 713
CviAII CATG 2 cut(s) 80, 872
CviQI GTAC 2 cut(s) 326, 713
DdeI CTNAG 3 cut(s) 363, 441, 816
DpnI GATC 3 cut(s) 351, 416, 736
DpnII GATC 3 cut(s) 349, 414, 734
EaeI YGGCCR 2 cut(s) 227, 756
Eco24I GRGCYC 1 cut(s) 185
Eco47III AGCGCT 1 cut(s) 209
Eco57I CTGAAG 1 cut(s) 624
Eco88I CYCGRG 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 185
FaeI CATG 2 cut(s) 83, 875
FaqI GGGAC 3 cut(s) 230, 589, 704
FatI CATG 2 cut(s) 79, 871
FblI GTMKAC 1 cut(s) 549
Fnu4HI GCNGC 3 cut(s) 26, 122, 670
FokI GGATG 4 cut(s) 137, 441, 803, 821
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 3 cut(s) 26, 122, 670
FspBI CTAG 3 cut(s) 125, 219, 395
GlaI GCGC 3 cut(s) 209, 359, 668
GluI GCNGC 3 cut(s) 26, 122, 670
HaeII RGCGCY 1 cut(s) 211
HaeIII GGCC 4 cut(s) 183, 229, 292, 758
HapII CCGG 1 cut(s) 65
HhaI GCGC 3 cut(s) 210, 360, 669
Hin1II CATG 2 cut(s) 83, 875
Hin6I GCGC 3 cut(s) 208, 358, 667
HinP1I GCGC 3 cut(s) 208, 358, 667
HincII GTYRAC 2 cut(s) 369, 550
HindII GTYRAC 2 cut(s) 369, 550
HinfI GANTC 3 cut(s) 32, 610, 749
HpaII CCGG 1 cut(s) 65
HphI GGTGA 1 cut(s) 434
Hpy166II GTNNAC 3 cut(s) 369, 386, 550
Hpy188I TCNGA 5 cut(s) 52, 349, 364, 511, 839
Hpy188III TCNNGA 7 cut(s) 38, 65, 80, 135, 251, 443, 854
Hpy8I GTNNAC 3 cut(s) 369, 386, 550
HpyAV CCTTC 3 cut(s) 345, 565, 691
HpyCH4III ACNGT 4 cut(s) 161, 244, 325, 580
HpyCH4V TGCA 2 cut(s) 28, 830
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpyF3I CTNAG 3 cut(s) 363, 441, 816
Hsp92II CATG 2 cut(s) 83, 875
HspAI GCGC 3 cut(s) 208, 358, 667
Kpn2I TCCGGA 1 cut(s) 64
KpnI GGTACC 1 cut(s) 716
Kzo9I GATC 3 cut(s) 349, 414, 734
LmnI GCTCC 1 cut(s) 220
Lsp1109I GCAGC 3 cut(s) 12, 108, 656
LweI GCATC 1 cut(s) 159
MaeI CTAG 3 cut(s) 125, 219, 395
MaeIII GTNAC 2 cut(s) 483, 762
MalI GATC 3 cut(s) 351, 416, 736
MboI GATC 3 cut(s) 349, 414, 734
MboII GAAGA 3 cut(s) 245, 527, 635
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 1 cut(s) 185
MlsI TGGCCA 1 cut(s) 758
MluCI AATT 9 cut(s) 271, 278, 308, 450, 543, 635, 705, 770, 821
MluNI TGGCCA 1 cut(s) 758
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 2 cut(s) 482, 682
Mox20I TGGCCA 1 cut(s) 758
MroI TCCGGA 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 311
MscI TGGCCA 1 cut(s) 758
Msp20I TGGCCA 1 cut(s) 758
MspI CCGG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 180
NdeII GATC 3 cut(s) 349, 414, 734
NlaIII CATG 2 cut(s) 83, 875
NlaIV GGNNCC 4 cut(s) 163, 183, 261, 714
NmeAIII GCCGAG 2 cut(s) 205, 644
NmuCI GTSAC 1 cut(s) 762
NspV TTCGAA 1 cut(s) 297
PagI TCATGA 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 2 cut(s) 610, 749
PkrI GCNGC 3 cut(s) 27, 123, 671
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
PspN4I GGNNCC 4 cut(s) 163, 183, 261, 714
PspOMI GGGCCC 1 cut(s) 181
PspPI GGNCC 2 cut(s) 181, 182
PstNI CAGNNNCTG 1 cut(s) 194
PsuI RGATCY 1 cut(s) 349
RsaI GTAC 2 cut(s) 327, 714
RsaNI GTAC 2 cut(s) 326, 713
SalI GTCGAC 1 cut(s) 548
SatI GCNGC 3 cut(s) 26, 122, 670
Sau3AI GATC 3 cut(s) 349, 414, 734
Sau96I GGNCC 2 cut(s) 181, 182
SchI GAGTC 1 cut(s) 26
SduI GDGCHC 1 cut(s) 185
SetI ASST 8 cut(s) 115, 123, 196, 466, 536, 702, 714, 852
SfaNI GCATC 1 cut(s) 159
SfuI TTCGAA 1 cut(s) 297
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
Sse9I AATT 9 cut(s) 271, 278, 308, 450, 543, 635, 705, 770, 821
SspMI CTAG 3 cut(s) 125, 219, 395
TaaI ACNGT 4 cut(s) 161, 244, 325, 580
TaqI TCGA 5 cut(s) 39, 297, 315, 417, 549
TasI AATT 9 cut(s) 271, 278, 308, 450, 543, 635, 705, 770, 821
TatI WGTACW 1 cut(s) 325
TfiI GAWTC 2 cut(s) 610, 749
TscAI CASTG 3 cut(s) 247, 483, 771
TseFI GTSAC 1 cut(s) 762
TseI GCWGC 3 cut(s) 25, 121, 669
Tsp45I GTSAC 1 cut(s) 762
TspDTI ATGAA 3 cut(s) 68, 443, 528
TspRI CASTG 3 cut(s) 247, 483, 771
XapI RAATTY 2 cut(s) 308, 821
XmiI GTMKAC 1 cut(s) 549
XmnI GAANNNNTTC 1 cut(s) 311
XspI CTAG 3 cut(s) 125, 219, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.