Rmu_sc0005878.1_g000015

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005878.1
OG0031358
Physical Location & Seq
Forward (+)
60320 .. 61003
684 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 594 bp
atgcgtaggactaatgctcttgtggtagcagcagtcgctgaagcttcctctcaaacacgacgaggggtttctcgaccgaggcgtgcaccgaatgaggagcgatttagagaatcaagaggaaacataatggaagattactttgtggagcgtccagttttcagtgaaggggtgttccggacacggtacaggatgagtcacaatgttttcgactgcatctccaatgacctttgtcgctatgaccggtactttgtccagaaattagatgctgttaagaaaatggcgaaatctacctccatcgaggctctgaaactatttacaagaggaatcgttaatttgtactatgcagaatacctcctggctcctactctggccaacctcagaagacttctcgccaaagctgagagaagaggttttcctgggatgattggaagtatcgactgcatacactggcaatggaagaattgcccaacaagttgggttggagaatacaacggtcgaaaacgtgtgcccaatatcatcctcgaagcagtcacttattatgacgcatggatatggcatgcctggatcatgcaacgacctcaatgtgcttgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

197

Amino Acids

23.11

Weight (kDa)

9.78

Isoelectric Point (pI)

56.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_tran PF04827 116 - 190 5.8e-29 Plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031358)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005878.1_g000015 Rmu_sc0007333.1_g000012

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 174
AclWI GGATC 1 cut(s) 572
AcoI YGGCCR 1 cut(s) 369
AcuI CTGAAG 1 cut(s) 60
AfaI GTAC 3 cut(s) 185, 245, 338
AflIII ACRYGT 1 cut(s) 502
AgeI ACCGGT 1 cut(s) 240
AjnI CCWGG 3 cut(s) 354, 415, 560
AluBI AGCT 2 cut(s) 44, 398
AluI AGCT 2 cut(s) 44, 398
Alw21I GWGCWC 1 cut(s) 88
Alw44I GTGCAC 1 cut(s) 84
AlwI GGATC 1 cut(s) 572
AlwNI CAGNNNCTG 1 cut(s) 38
Aor13HI TCCGGA 1 cut(s) 174
AoxI GGCC 1 cut(s) 369
ApaLI GTGCAC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 29
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
AsiGI ACCGGT 1 cut(s) 240
BaeGI GKGCMC 2 cut(s) 88, 510
BalI TGGCCA 1 cut(s) 371
BbsI GAAGAC 1 cut(s) 388
Bbv12I GWGCWC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 41
BccI CCATC 1 cut(s) 302
BciT130I CCWGG 3 cut(s) 356, 417, 562
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 3 cut(s) 356, 417, 562
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 3 cut(s) 356, 417, 562
BmsI GCATC 2 cut(s) 222, 253
BoxI GACNNNNGTC 1 cut(s) 228
BpiI GAAGAC 1 cut(s) 388
BsaJI CCNNGG 2 cut(s) 77, 416
BsaWI WCCGGW 2 cut(s) 174, 240
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bse118I RCCGGY 1 cut(s) 240
Bse1I ACTGG 2 cut(s) 152, 452
Bse3DI GCAATG 1 cut(s) 458
BseAI TCCGGA 1 cut(s) 174
BseBI CCWGG 3 cut(s) 356, 417, 562
BseDI CCNNGG 2 cut(s) 77, 416
BseGI GGATG 3 cut(s) 195, 426, 516
BseMI GCAATG 1 cut(s) 458
BseMII CTCAG 2 cut(s) 390, 391
BseNI ACTGG 2 cut(s) 152, 452
BseRI GAGGAG 1 cut(s) 110
BseSI GKGCMC 2 cut(s) 88, 510
BseXI GCAGC 1 cut(s) 41
Bsh1285I CGRYCG 2 cut(s) 77, 496
BshFI GGCC 1 cut(s) 371
BshTI ACCGGT 1 cut(s) 240
BsiEI CGRYCG 2 cut(s) 77, 496
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 2 cut(s) 175, 241
BsnI GGCC 1 cut(s) 371
Bsp1286I GDGCHC 2 cut(s) 88, 510
Bsp13I TCCGGA 1 cut(s) 174
Bsp143I GATC 1 cut(s) 564
BspANI GGCC 1 cut(s) 371
BspCNI CTCAG 2 cut(s) 390, 391
BspEI TCCGGA 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 360
BspPI GGATC 1 cut(s) 572
BsrDI GCAATG 1 cut(s) 458
BsrFI RCCGGY 1 cut(s) 240
BsrI ACTGG 2 cut(s) 152, 452
BssAI RCCGGY 1 cut(s) 240
BssECI CCNNGG 2 cut(s) 77, 416
BssMI GATC 1 cut(s) 564
Bst2UI CCWGG 3 cut(s) 356, 417, 562
Bst4CI ACNGT 2 cut(s) 183, 494
Bst6I CTCTTC 1 cut(s) 400
BstC8I GCNNGC 3 cut(s) 84, 558, 589
BstDEI CTNAG 2 cut(s) 377, 399
BstF5I GGATG 3 cut(s) 195, 426, 516
BstKTI GATC 1 cut(s) 567
BstMBI GATC 1 cut(s) 564
BstMCI CGRYCG 2 cut(s) 77, 496
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 3 cut(s) 356, 417, 562
BstNSI RCATGY 1 cut(s) 560
BstPAI GACNNNNGTC 1 cut(s) 228
BstSCI CCNGG 3 cut(s) 354, 415, 560
BstSLI GKGCMC 2 cut(s) 88, 510
BstV1I GCAGC 1 cut(s) 41
BstV2I GAAGAC 1 cut(s) 388
BstXI CCANNNNNNTGG 1 cut(s) 474
BsuRI GGCC 1 cut(s) 371
BtsCI GGATG 3 cut(s) 195, 426, 516
BtsIMutI CAGTG 2 cut(s) 166, 445
Cac8I GCNNGC 3 cut(s) 84, 558, 589
CaiI CAGNNNCTG 1 cut(s) 38
Cfr10I RCCGGY 1 cut(s) 240
CseI GACGC 2 cut(s) 137, 551
Csp6I GTAC 3 cut(s) 184, 244, 337
CspAI ACCGGT 1 cut(s) 240
CviAII CATG 3 cut(s) 546, 557, 568
CviJI RGCY 5 cut(s) 44, 302, 359, 371, 398
CviKI_1 RGCY 5 cut(s) 44, 302, 359, 371, 398
CviQI GTAC 3 cut(s) 184, 244, 337
DdeI CTNAG 2 cut(s) 377, 399
DpnI GATC 1 cut(s) 566
DpnII GATC 1 cut(s) 564
EaeI YGGCCR 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 400
EarI CTCTTC 1 cut(s) 400
Eco57I CTGAAG 1 cut(s) 60
EcoRII CCWGG 3 cut(s) 354, 415, 560
FaeI CATG 3 cut(s) 549, 560, 571
FaiI YATR 9 cut(s) 125, 237, 342, 443, 540, 547, 553, 558, 569
FatI CATG 3 cut(s) 545, 556, 567
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 3 cut(s) 202, 433, 503
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
HaeIII GGCC 1 cut(s) 371
HapII CCGG 2 cut(s) 175, 241
HgaI GACGC 2 cut(s) 137, 551
Hin1II CATG 3 cut(s) 549, 560, 571
HindIII AAGCTT 1 cut(s) 42
HinfI GANTC 3 cut(s) 110, 193, 324
HpaII CCGG 2 cut(s) 175, 241
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 2 cut(s) 306, 380
Hpy188III TCNNGA 4 cut(s) 72, 114, 175, 253
Hpy8I GTNNAC 1 cut(s) 86
Hpy99I CGWCG 1 cut(s) 63
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 2 cut(s) 183, 494
HpyCH4IV ACGT 1 cut(s) 502
HpyCH4V TGCA 5 cut(s) 86, 213, 344, 441, 571
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 377, 399
HpySE526I ACGT 1 cut(s) 502
Hsp92II CATG 3 cut(s) 549, 560, 571
Kpn2I TCCGGA 1 cut(s) 174
Kzo9I GATC 1 cut(s) 564
LmnI GCTCC 3 cut(s) 97, 145, 364
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 2 cut(s) 222, 253
MaeII ACGT 1 cut(s) 502
MaeIII GTNAC 2 cut(s) 194, 529
MalI GATC 1 cut(s) 566
MboI GATC 1 cut(s) 564
MboII GAAGA 4 cut(s) 143, 393, 417, 469
MhlI GDGCHC 2 cut(s) 88, 510
MlsI TGGCCA 1 cut(s) 371
MluCI AATT 3 cut(s) 257, 331, 460
MluNI TGGCCA 1 cut(s) 371
MlyI GAGTC 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 460
Mox20I TGGCCA 1 cut(s) 371
MroI TCCGGA 1 cut(s) 174
MscI TGGCCA 1 cut(s) 371
MseI TTAA 2 cut(s) 270, 330
MslI CAYNNNNRTG 1 cut(s) 550
Msp20I TGGCCA 1 cut(s) 371
MspI CCGG 2 cut(s) 175, 241
MspR9I CCNGG 3 cut(s) 356, 417, 562
MvaI CCWGG 3 cut(s) 356, 417, 562
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 1 cut(s) 564
NlaIII CATG 3 cut(s) 549, 560, 571
NlaIV GGNNCC 1 cut(s) 360
NmuCI GTSAC 2 cut(s) 194, 529
NspI RCATGY 1 cut(s) 560
PaeI GCATGC 1 cut(s) 560
PcsI WCGNNNNNNNCGW 1 cut(s) 79
PfeI GAWTC 2 cut(s) 110, 324
PinAI ACCGGT 1 cut(s) 240
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PshAI GACNNNNGTC 1 cut(s) 228
Psp6I CCWGG 3 cut(s) 354, 415, 560
PspGI CCWGG 3 cut(s) 354, 415, 560
PspN4I GGNNCC 1 cut(s) 360
PstNI CAGNNNCTG 1 cut(s) 38
RsaI GTAC 3 cut(s) 185, 245, 338
RsaNI GTAC 3 cut(s) 184, 244, 337
RseI CAYNNNNRTG 1 cut(s) 550
SaqAI TTAA 2 cut(s) 270, 330
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 1 cut(s) 564
SchI GAGTC 1 cut(s) 202
ScrFI CCNGG 3 cut(s) 356, 417, 562
SduI GDGCHC 2 cut(s) 88, 510
SetI ASST 9 cut(s) 46, 228, 293, 354, 378, 400, 412, 505, 580
SfaNI GCATC 2 cut(s) 222, 253
SmiMI CAYNNNNRTG 1 cut(s) 550
SphI GCATGC 1 cut(s) 560
Sse9I AATT 3 cut(s) 257, 331, 460
StyD4I CCNGG 3 cut(s) 354, 415, 560
TaaI ACNGT 2 cut(s) 183, 494
TaiI ACGT 1 cut(s) 505
TaqI TCGA 6 cut(s) 73, 207, 297, 435, 496, 522
TaqII GACCGA 1 cut(s) 91
TasI AATT 3 cut(s) 257, 331, 460
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 2 cut(s) 110, 324
Tru1I TTAA 2 cut(s) 270, 330
Tru9I TTAA 2 cut(s) 270, 330
TscAI CASTG 2 cut(s) 166, 452
TseFI GTSAC 2 cut(s) 194, 529
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 2 cut(s) 194, 529
TspRI CASTG 2 cut(s) 166, 452
VneI GTGCAC 1 cut(s) 84
XceI RCATGY 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.