Rmu_sc0007333.1_g000012

Plant transposon protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007333.1
OG0031358
Physical Location & Seq
Forward (+)
67934 .. 68227
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007333.1_g000012.1.cds

Sequence Viewer

Length: 294 bp
atgagtaggactaatgctcttgtggtagcagcagtcgctgaagcttcctctcaaacacgacgaggggtttctcgaccgaggcgtgcaccgaatgaggagcgatttagagaatcaagaggaaacataatggaagattactttgtggagcgtccagttttcagtgaagaggtgttccgaacatggtataggatgagtcacaatgttttcgactgcatctccaatgacctttgtcgctatgaccggtactttgtccagaaatcagatgctgttaagaaagtcgaactacttccctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

97

Amino Acids

11.47

Weight (kDa)

9.13

Isoelectric Point (pI)

62.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031358)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005878.1_g000015 Rmu_sc0007333.1_g000012

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 60
AfaI GTAC 1 cut(s) 245
AgeI ACCGGT 1 cut(s) 240
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
Alw21I GWGCWC 1 cut(s) 88
Alw44I GTGCAC 1 cut(s) 84
AlwNI CAGNNNCTG 2 cut(s) 38, 266
ApaLI GTGCAC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 29
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
AsiGI ACCGGT 1 cut(s) 240
Asp700I GAANNNNTTC 1 cut(s) 285
BaeGI GKGCMC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 41
BfaI CTAG 1 cut(s) 292
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
BmsI GCATC 2 cut(s) 222, 253
BoxI GACNNNNGTC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 77
BsaWI WCCGGW 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bse118I RCCGGY 1 cut(s) 240
Bse1I ACTGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 77
BseGI GGATG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 110
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 1 cut(s) 41
Bsh1285I CGRYCG 1 cut(s) 77
BshTI ACCGGT 1 cut(s) 240
BsiEI CGRYCG 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 240
BsrI ACTGG 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 84
BstF5I GGATG 1 cut(s) 195
BstMCI CGRYCG 1 cut(s) 77
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstPAI GACNNNNGTC 1 cut(s) 228
BstSLI GKGCMC 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 41
BtsCI GGATG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 84
CaiI CAGNNNCTG 2 cut(s) 38, 266
Cfr10I RCCGGY 1 cut(s) 240
CseI GACGC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 244
CspAI ACCGGT 1 cut(s) 240
CviAII CATG 1 cut(s) 180
CviJI RGCY 1 cut(s) 44
CviKI_1 RGCY 1 cut(s) 44
CviQI GTAC 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 60
FaeI CATG 1 cut(s) 183
FaiI YATR 4 cut(s) 125, 181, 186, 237
FatI CATG 1 cut(s) 179
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 1 cut(s) 202
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 1 cut(s) 292
GluI GCNGC 1 cut(s) 30
HapII CCGG 1 cut(s) 241
HgaI GACGC 1 cut(s) 137
Hin1II CATG 1 cut(s) 183
HindIII AAGCTT 1 cut(s) 42
HinfI GANTC 2 cut(s) 110, 193
HpaII CCGG 1 cut(s) 241
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 2 cut(s) 176, 262
Hpy188III TCNNGA 3 cut(s) 72, 114, 253
Hpy8I GTNNAC 1 cut(s) 86
Hpy99I CGWCG 1 cut(s) 63
HpyCH4V TGCA 2 cut(s) 86, 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
Hsp92II CATG 1 cut(s) 183
LmnI GCTCC 2 cut(s) 97, 145
LpnPI CCDG 3 cut(s) 165, 254, 266
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 2 cut(s) 222, 253
MaeI CTAG 1 cut(s) 292
MaeIII GTNAC 1 cut(s) 194
MboII GAAGA 2 cut(s) 143, 176
MhlI GDGCHC 1 cut(s) 88
MlyI GAGTC 1 cut(s) 202
MnlI CCTC 6 cut(s) 56, 58, 72, 88, 110, 160
MroXI GAANNNNTTC 1 cut(s) 285
MseI TTAA 1 cut(s) 270
MspI CCGG 1 cut(s) 241
MwoI GCNNNNNNNGC 1 cut(s) 35
NlaIII CATG 1 cut(s) 183
NmuCI GTSAC 1 cut(s) 194
PcsI WCGNNNNNNNCGW 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 1 cut(s) 110
PinAI ACCGGT 1 cut(s) 240
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PshAI GACNNNNGTC 1 cut(s) 228
PstNI CAGNNNCTG 2 cut(s) 38, 266
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 1 cut(s) 30
SchI GAGTC 1 cut(s) 202
SduI GDGCHC 1 cut(s) 88
SetI ASST 3 cut(s) 46, 171, 228
SfaNI GCATC 2 cut(s) 222, 253
SspMI CTAG 1 cut(s) 292
TaqI TCGA 3 cut(s) 73, 207, 279
TaqII GACCGA 1 cut(s) 91
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 194
TspRI CASTG 1 cut(s) 166
VneI GTGCAC 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.