Rmu_sc0006070.1_g000020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006070.1
OG0031360
Physical Location & Seq
Forward (+)
60363 .. 63055
2693 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1626 bp
atggagcacatcgcgagccaagctaaggaaaaccacaagcagcttataggtatgatagctgcccagggcaagaacacaacatctgagattgataccattcgcaattatgggtctaatctcgcaactcaggtcgctatacaaaaagatgatttggatcaggccacagagattttgaagaaagcaataggagatcctgctgcgagtcctaaccacgatgaggtttacgggggaccttttcctccgcacatcatgcttgcactatatcccaagcgctacaagaacatcatattcttaaccttctcaggggaggatactgagtccgccgccactcacttggccaggttcagagtgcagtgtcgccagtatcaaaacaatgacagcctgaagtgtaagatctttggcacttctctattaagggctgcctttacttggtttgccaagttgaagccaggatcagtcgctaattggctaacaatggaaagacttttcagagagactttcggggctatagaacctgagaatgaagaggaggactcagaagatgaggaagagaaggacaacgacgtctccgctttcgagccaactggaataaagaatcccgtgctcaaacaactgaagcttaccaaggagccggtcaagctcaaatacgtggcgtttaccaaactagagtttgcgatctatacatacgatgcgaataaagcgcataacttattggatgagatgatagtcgcgaagatggtaaaaactgactttggacctttccctagactagatcagttgaaagggaagaagtactataagttccacaatctttggaaccataataccgctgaatcagctttggtgcatctgaaccctttccctgacacgggggtgaatatggacaagaggaagaagatagagagcagccagcaaagaagaggcctaagcctatcaaagagacttcgcctgttgtcctttgcttgcagtgcaaagaagaatttggaatccaggtgtcgcatgaagaagttgagtagactttccgctttggttcattcccgccaatcaagctgggctccccttccagaaactttcagacctagagacaagagtaaagcagatgctctatccccttcgaatgactccaacttgttcaagaaatcaagggctgcagaggaaggaatgatgcagaatgaaaaggccaagggcaagcaaagggatatcctgactaagtcgtatatctcacctgacaaagctgtagaaatcagcccctctaagaagagaaaactccaacgctgctttggggaggcgaaacgaaccgtagaagcactagatcagggcttgatcaagccttcccagctgacaaaatccccagagaaataccttaggcaaatagaggcacttgcagctaagccactgatcgcacccagaactttctataagcaatctaagtctacgccagcaatgcctaagcctagcgtattttgcaggatcgctgaggagaaacgaagtactcctccacctgcaaaaaaggaaagctcgcccactagaagacccaatgtcaagcgacgtttatttcaagacgagtcagaaaacaaggttttcaagagactggggagcaaggggagtgatgctgaaagcttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

541

Amino Acids

61.37

Weight (kDa)

9.67

Isoelectric Point (pI)

57.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031360)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8395251.1_g000001 Rmu_sc0006070.1_g000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1510
AasI GACNNNNNNGTC 1 cut(s) 563
AatII GACGTC 1 cut(s) 567
Acc36I ACCTGC 1 cut(s) 1510
AccI GTMKAC 2 cut(s) 1015, 1433
AccII CGCG 2 cut(s) 14, 731
AciI CCGC 7 cut(s) 242, 321, 324, 570, 828, 1023, 1039
AclWI GGATC 4 cut(s) 162, 185, 460, 1478
AcoI YGGCCR 1 cut(s) 336
AcsI RAATTY 1 cut(s) 979
AcuI CTGAAG 2 cut(s) 404, 635
AcyI GRCGYC 1 cut(s) 564
AfaI GTAC 2 cut(s) 794, 1492
AfeI AGCGCT 1 cut(s) 272
AfiI CCNNNNNNNGG 6 cut(s) 25, 217, 303, 429, 868, 869
AgsI TTSAA 6 cut(s) 175, 445, 781, 1135, 1559, 1585
AhdI GACNNNNNGTC 1 cut(s) 1538
AjnI CCWGG 4 cut(s) 63, 338, 448, 989
AleI CACNNNNGTG 1 cut(s) 872
Alw21I GWGCWC 2 cut(s) 9, 606
Alw26I GTCTC 5 cut(s) 488, 571, 934, 1077, 1582
AlwI GGATC 4 cut(s) 162, 185, 460, 1478
Aor51HI AGCGCT 1 cut(s) 272
AoxI GGCC 4 cut(s) 159, 336, 922, 1179
ApeKI GCWGC 8 cut(s) 40, 59, 197, 419, 906, 1148, 1275, 1385
ApoI RAATTY 1 cut(s) 979
Asp700I GAANNNNTTC 1 cut(s) 857
AspLEI GCGC 2 cut(s) 273, 703
AspS9I GGNCC 2 cut(s) 230, 755
AsuHPI GGTGA 2 cut(s) 886, 1215
AsuII TTCGAA 1 cut(s) 1115
AvaII GGWCC 2 cut(s) 230, 755
AxyI CCTNAGG 1 cut(s) 1364
BalI TGGCCA 1 cut(s) 338
BanII GRGCYC 1 cut(s) 1057
BbsI GAAGAC 1 cut(s) 1537
Bbv12I GWGCWC 2 cut(s) 9, 606
BbvCI CCTCAGC 1 cut(s) 1476
BbvI GCAGC 8 cut(s) 46, 52, 184, 406, 918, 1135, 1262, 1397
BccI CCATC 1 cut(s) 730
BciT130I CCWGG 4 cut(s) 65, 340, 450, 991
BciVI GTATCC 1 cut(s) 304
BclI TGATCA 1 cut(s) 1323
BcoDI GTCTC 5 cut(s) 488, 571, 934, 1077, 1582
BfaI CTAG 7 cut(s) 665, 765, 770, 1080, 1310, 1455, 1527
BfmI CTRYAG 3 cut(s) 507, 1149, 1236
BfoI RGCGCY 1 cut(s) 274
BfuAI ACCTGC 1 cut(s) 1510
BfuI GTATCC 1 cut(s) 304
BglII AGATCT 1 cut(s) 393
BisI GCNGC 9 cut(s) 41, 60, 198, 324, 420, 907, 1149, 1276, 1386
BlpI GCTNAGC 1 cut(s) 1389
BlsI GCNGC 9 cut(s) 42, 61, 199, 325, 421, 908, 1150, 1277, 1387
BmcAI AGTACT 2 cut(s) 794, 1492
Bme1390I CCNGG 4 cut(s) 65, 340, 450, 991
Bme18I GGWCC 2 cut(s) 230, 755
BmeRI GACNNNNNGTC 1 cut(s) 1538
BmgT120I GGNCC 2 cut(s) 230, 755
BmiI GGNNCC 4 cut(s) 231, 630, 818, 1056
BmrFI CCNGG 4 cut(s) 65, 340, 450, 991
BmrI ACTGGG 1 cut(s) 1601
BmsI GCATC 5 cut(s) 679, 856, 1090, 1155, 1600
BmuI ACTGGG 1 cut(s) 1601
BpiI GAAGAC 1 cut(s) 1537
BplI GAGNNNNNCTC 2 cut(s) 518, 550
Bpu10I CCTNAGC 4 cut(s) 24, 926, 1449, 1476
Bpu1102I GCTNAGC 1 cut(s) 1389
Bpu14I TTCGAA 1 cut(s) 1115
BsaAI YACGTR 1 cut(s) 649
BsaBI GATNNNNATC 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 564
BsaJI CCNNGG 4 cut(s) 63, 64, 624, 1182
BsaXI ACNNNNNCTCC 2 cut(s) 551, 581
Bsc4I CCNNNNNNNGG 6 cut(s) 25, 217, 303, 429, 868, 869
Bse118I RCCGGY 1 cut(s) 631
Bse1I ACTGG 3 cut(s) 361, 589, 1596
Bse21I CCTNAGG 1 cut(s) 1364
Bse3DI GCAATG 1 cut(s) 1449
Bse8I GATNNNNATC 1 cut(s) 153
BseBI CCWGG 4 cut(s) 65, 340, 450, 991
BseDI CCNNGG 4 cut(s) 63, 64, 624, 1182
BseGI GGATG 1 cut(s) 721
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 6 cut(s) 25, 217, 303, 429, 868, 869
BseMI GCAATG 1 cut(s) 1449
BseMII CTCAG 7 cut(s) 75, 140, 306, 315, 507, 549, 1467
BseNI ACTGG 3 cut(s) 361, 589, 1596
BseRI GAGGAG 3 cut(s) 542, 1485, 1493
BseXI GCAGC 8 cut(s) 46, 52, 184, 406, 918, 1135, 1262, 1397
BseYI CCCAGC 2 cut(s) 1050, 1335
BsgI GTGCAG 1 cut(s) 371
Bsh1236I CGCG 2 cut(s) 14, 731
BshFI GGCC 4 cut(s) 161, 338, 924, 1181
BsiHKAI GWGCWC 2 cut(s) 9, 606
BsiSI CCGG 1 cut(s) 632
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 6 cut(s) 25, 217, 303, 429, 868, 869
BsmAI GTCTC 5 cut(s) 488, 571, 934, 1077, 1582
BsmBI CGTCTC 1 cut(s) 571
BsmFI GGGAC 1 cut(s) 243
BsnI GGCC 4 cut(s) 161, 338, 924, 1181
Bsp119I TTCGAA 1 cut(s) 1115
Bsp1286I GDGCHC 3 cut(s) 9, 606, 1057
Bsp1720I GCTNAGC 1 cut(s) 1389
Bsp68I TCGCGA 2 cut(s) 14, 731
BspACI CCGC 7 cut(s) 242, 321, 324, 570, 828, 1023, 1039
BspANI GGCC 4 cut(s) 161, 338, 924, 1181
BspCNI CTCAG 7 cut(s) 76, 139, 307, 314, 508, 548, 1468
BspFNI CGCG 2 cut(s) 14, 731
BspLI GGNNCC 4 cut(s) 231, 630, 818, 1056
BspMAI CTGCAG 1 cut(s) 1153
BspMI ACCTGC 1 cut(s) 1510
BspPI GGATC 4 cut(s) 162, 185, 460, 1478
BspT104I TTCGAA 1 cut(s) 1115
BsrDI GCAATG 1 cut(s) 1449
BsrFI RCCGGY 1 cut(s) 631
BsrI ACTGG 3 cut(s) 361, 589, 1596
BssAI RCCGGY 1 cut(s) 631
BssECI CCNNGG 4 cut(s) 63, 64, 624, 1182
BssNI GRCGYC 1 cut(s) 564
BssT1I CCWWGG 2 cut(s) 624, 1182
Bst2UI CCWGG 4 cut(s) 65, 340, 450, 991
Bst4CI ACNGT 1 cut(s) 1300
Bst6I CTCTTC 4 cut(s) 519, 543, 913, 1253
BstACI GRCGYC 1 cut(s) 564
BstAPI GCANNNNNTGC 1 cut(s) 250
BstBAI YACGTR 1 cut(s) 649
BstBI TTCGAA 1 cut(s) 1115
BstC8I GCNNGC 7 cut(s) 16, 255, 911, 964, 1190, 1440, 1520
BstF5I GGATG 1 cut(s) 721
BstFNI CGCG 2 cut(s) 14, 731
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 2 cut(s) 273, 703
BstMAI GTCTC 5 cut(s) 488, 571, 934, 1077, 1582
BstNI CCWGG 4 cut(s) 65, 340, 450, 991
BstSCI CCNGG 4 cut(s) 63, 338, 448, 989
BstSFI CTRYAG 3 cut(s) 507, 1149, 1236
BstUI CGCG 2 cut(s) 14, 731
BstV1I GCAGC 8 cut(s) 46, 52, 184, 406, 918, 1135, 1262, 1397
BstV2I GAAGAC 1 cut(s) 1537
BstX2I RGATCY 2 cut(s) 190, 393
BstXI CCANNNNNNTGG 1 cut(s) 334
BstYI RGATCY 2 cut(s) 190, 393
Bsu36I CCTNAGG 1 cut(s) 1364
BsuI GTATCC 1 cut(s) 304
BsuRI GGCC 4 cut(s) 161, 338, 924, 1181
BtsCI GGATG 1 cut(s) 721
BtsI GCAGTG 2 cut(s) 359, 973
BtsIMutI CAGTG 3 cut(s) 359, 973, 1394
BtuMI TCGCGA 2 cut(s) 14, 731
BveI ACCTGC 1 cut(s) 1510
Cac8I GCNNGC 7 cut(s) 16, 255, 911, 964, 1190, 1440, 1520
CfoI GCGC 2 cut(s) 273, 703
Cfr10I RCCGGY 1 cut(s) 631
Cfr13I GGNCC 2 cut(s) 230, 755
Csp6I GTAC 2 cut(s) 793, 1491
CspCI CAANNNNNGTGG 2 cut(s) 794, 829
CviAII CATG 2 cut(s) 250, 1000
CviQI GTAC 2 cut(s) 793, 1491
DrdI GACNNNNNNGTC 1 cut(s) 563
DriI GACNNNNNGTC 1 cut(s) 1538
DseDI GACNNNNNNGTC 1 cut(s) 563
EaeI YGGCCR 1 cut(s) 336
Eam1104I CTCTTC 4 cut(s) 519, 543, 913, 1253
Eam1105I GACNNNNNGTC 1 cut(s) 1538
EarI CTCTTC 4 cut(s) 519, 543, 913, 1253
EciI GGCGGA 1 cut(s) 310
Eco130I CCWWGG 2 cut(s) 624, 1182
Eco147I AGGCCT 1 cut(s) 924
Eco24I GRGCYC 1 cut(s) 1057
Eco32I GATATC 1 cut(s) 1201
Eco47I GGWCC 2 cut(s) 230, 755
Eco47III AGCGCT 1 cut(s) 272
Eco57I CTGAAG 2 cut(s) 404, 635
Eco81I CCTNAGG 1 cut(s) 1364
EcoO109I RGGNCCY 1 cut(s) 230
EcoRII CCWGG 4 cut(s) 63, 338, 448, 989
EcoRV GATATC 1 cut(s) 1201
EcoT14I CCWWGG 2 cut(s) 624, 1182
EcoT38I GRGCYC 1 cut(s) 1057
ErhI CCWWGG 2 cut(s) 624, 1182
Esp3I CGTCTC 1 cut(s) 571
FaeI CATG 2 cut(s) 253, 1003
FaqI GGGAC 1 cut(s) 243
FatI CATG 2 cut(s) 249, 999
FauI CCCGC 1 cut(s) 1046
FbaI TGATCA 1 cut(s) 1323
FblI GTMKAC 2 cut(s) 1015, 1433
Fnu4HI GCNGC 9 cut(s) 41, 60, 198, 324, 420, 907, 1149, 1276, 1386
FokI GGATG 1 cut(s) 728
FriOI GRGCYC 1 cut(s) 1057
Fsp4HI GCNGC 9 cut(s) 41, 60, 198, 324, 420, 907, 1149, 1276, 1386
FspBI CTAG 7 cut(s) 665, 765, 770, 1080, 1310, 1455, 1527
GlaI GCGC 2 cut(s) 272, 702
GluI GCNGC 9 cut(s) 41, 60, 198, 324, 420, 907, 1149, 1276, 1386
GsaI CCCAGC 2 cut(s) 1054, 1339
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 4 cut(s) 161, 338, 924, 1181
HapII CCGG 1 cut(s) 632
HhaI GCGC 2 cut(s) 273, 703
Hin1I GRCGYC 1 cut(s) 564
Hin1II CATG 2 cut(s) 253, 1003
Hin6I GCGC 2 cut(s) 271, 701
HinP1I GCGC 2 cut(s) 271, 701
HindIII AAGCTT 2 cut(s) 617, 1618
HinfI GANTC 8 cut(s) 202, 317, 533, 595, 833, 986, 1121, 1565
HpaII CCGG 1 cut(s) 632
HphI GGTGA 2 cut(s) 886, 1215
Hpy166II GTNNAC 4 cut(s) 223, 657, 1016, 1434
Hpy188I TCNGA 7 cut(s) 85, 347, 491, 538, 852, 1076, 1570
Hpy188III TCNNGA 7 cut(s) 13, 730, 1064, 1135, 1204, 1559, 1585
Hpy8I GTNNAC 4 cut(s) 223, 657, 1016, 1434
Hpy99I CGWCG 2 cut(s) 566, 1551
HpyAV CCTTC 6 cut(s) 307, 547, 1070, 1122, 1151, 1341
HpyCH4III ACNGT 1 cut(s) 1300
HpyCH4IV ACGT 3 cut(s) 564, 648, 1549
HpySE526I ACGT 3 cut(s) 564, 648, 1549
Hsp92I GRCGYC 1 cut(s) 564
Hsp92II CATG 2 cut(s) 253, 1003
HspAI GCGC 2 cut(s) 271, 701
Ksp22I TGATCA 1 cut(s) 1323
LmnI GCTCC 4 cut(s) 4, 628, 1060, 1596
Lsp1109I GCAGC 8 cut(s) 46, 52, 184, 406, 918, 1135, 1262, 1397
LweI GCATC 5 cut(s) 679, 856, 1090, 1155, 1600
MaeI CTAG 7 cut(s) 665, 765, 770, 1080, 1310, 1455, 1527
MaeII ACGT 3 cut(s) 564, 648, 1549
MflI RGATCY 2 cut(s) 190, 393
MhlI GDGCHC 3 cut(s) 9, 606, 1057
MlsI TGGCCA 1 cut(s) 338
MluCI AATT 3 cut(s) 103, 463, 979
MluNI TGGCCA 1 cut(s) 338
MlyI GAGTC 5 cut(s) 211, 326, 527, 1115, 1574
MmeI TCCRAC 2 cut(s) 1149, 1294
Mox20I TGGCCA 1 cut(s) 338
MroXI GAANNNNTTC 1 cut(s) 857
MscI TGGCCA 1 cut(s) 338
MseI TTAA 2 cut(s) 293, 413
MslI CAYNNNNRTG 1 cut(s) 872
Msp20I TGGCCA 1 cut(s) 338
MspA1I CMGCKG 2 cut(s) 830, 1339
MspI CCGG 1 cut(s) 632
MspR9I CCNGG 4 cut(s) 65, 340, 450, 991
MvaI CCWGG 4 cut(s) 65, 340, 450, 991
MvnI CGCG 2 cut(s) 14, 731
NlaIII CATG 2 cut(s) 253, 1003
NlaIV GGNNCC 4 cut(s) 231, 630, 818, 1056
NruI TCGCGA 2 cut(s) 14, 731
NspV TTCGAA 1 cut(s) 1115
OliI CACNNNNGTG 1 cut(s) 872
PaqCI CACCTGC 1 cut(s) 1510
PasI CCCWGGG 1 cut(s) 64
PceI AGGCCT 1 cut(s) 924
PdmI GAANNNNTTC 1 cut(s) 857
PfeI GAWTC 3 cut(s) 595, 833, 986
PflFI GACNNNGTC 1 cut(s) 1210
PkrI GCNGC 9 cut(s) 42, 61, 199, 325, 421, 908, 1150, 1277, 1387
PleI GAGTC 5 cut(s) 210, 325, 527, 1115, 1573
PpsI GAGTC 5 cut(s) 210, 325, 527, 1115, 1573
Ppu21I YACGTR 1 cut(s) 649
PpuMI RGGWCCY 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 230
Psp6I CCWGG 4 cut(s) 63, 338, 448, 989
PspFI CCCAGC 2 cut(s) 1050, 1335
PspGI CCWGG 4 cut(s) 63, 338, 448, 989
PspN4I GGNNCC 4 cut(s) 231, 630, 818, 1056
PspPI GGNCC 2 cut(s) 230, 755
PspPPI RGGWCCY 1 cut(s) 230
PsrI GAACNNNNNNTAC 2 cut(s) 785, 817
PstI CTGCAG 1 cut(s) 1153
PsuI RGATCY 2 cut(s) 190, 393
PsyI GACNNNGTC 1 cut(s) 1210
PvuII CAGCTG 1 cut(s) 1339
RruI TCGCGA 2 cut(s) 14, 731
RsaI GTAC 2 cut(s) 794, 1492
RsaNI GTAC 2 cut(s) 793, 1491
RseI CAYNNNNRTG 1 cut(s) 872
SaqAI TTAA 2 cut(s) 293, 413
SatI GCNGC 9 cut(s) 41, 60, 198, 324, 420, 907, 1149, 1276, 1386
Sau96I GGNCC 2 cut(s) 230, 755
ScaI AGTACT 2 cut(s) 794, 1492
SchI GAGTC 5 cut(s) 211, 326, 527, 1115, 1574
ScrFI CCNGG 4 cut(s) 65, 340, 450, 991
SduI GDGCHC 3 cut(s) 9, 606, 1057
SfaNI GCATC 5 cut(s) 679, 856, 1090, 1155, 1600
SfcI CTRYAG 3 cut(s) 507, 1149, 1236
SfuI TTCGAA 1 cut(s) 1115
SinI GGWCC 2 cut(s) 230, 755
SmiMI CAYNNNNRTG 1 cut(s) 872
Sse9I AATT 3 cut(s) 103, 463, 979
SseBI AGGCCT 1 cut(s) 924
SsiI CCGC 7 cut(s) 242, 321, 324, 570, 828, 1023, 1039
SspMI CTAG 7 cut(s) 665, 765, 770, 1080, 1310, 1455, 1527
StuI AGGCCT 1 cut(s) 924
StyD4I CCNGG 4 cut(s) 63, 338, 448, 989
StyI CCWWGG 2 cut(s) 624, 1182
TaaI ACNGT 1 cut(s) 1300
TaiI ACGT 3 cut(s) 567, 651, 1552
TaqI TCGA 2 cut(s) 576, 1115
TasI AATT 3 cut(s) 103, 463, 979
TatI WGTACW 2 cut(s) 792, 1490
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 3 cut(s) 595, 833, 986
Tru1I TTAA 2 cut(s) 293, 413
Tru9I TTAA 2 cut(s) 293, 413
TscAI CASTG 3 cut(s) 359, 973, 1401
TseI GCWGC 8 cut(s) 40, 59, 197, 419, 906, 1148, 1275, 1385
TspDTI ATGAA 4 cut(s) 537, 1016, 1022, 1188
TspRI CASTG 3 cut(s) 359, 973, 1401
Tth111I GACNNNGTC 1 cut(s) 1210
VpaK11BI GGWCC 2 cut(s) 230, 755
XapI RAATTY 1 cut(s) 979
XcmI CCANNNNNNNNNTGG 1 cut(s) 1277
XmiI GTMKAC 2 cut(s) 1015, 1433
XmnI GAANNNNTTC 1 cut(s) 857
XspI CTAG 7 cut(s) 665, 765, 770, 1080, 1310, 1455, 1527
ZraI GACGTC 1 cut(s) 565
ZrmI AGTACT 2 cut(s) 794, 1492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.