Rmu_sc0006128.1_g000015

Hs1pro-1 N-terminus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006128.1
OG0023120
Physical Location & Seq
Forward (+)
59734 .. 60066
333 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 333 bp
atggtctcctcagatatacccagcaagttccccagactctccatcaagctctatcacctttccatccccagttccttccgtgccgtgcaaatccagttagacatttatgctgcctccgagcaggcctgctccacctacgagcactacccccgcctccccgagttccgtaggctctggagctccacctacttcctaaaatggaaaagcgagtccattctcaagttggctctgcaagcacttgagatttcgtttcggttcgtctccacgatcctatcggttccgaggccgtactccaaccatggacagagcaacatcaatttgatcaataagtag

Protein Analysis

110

Amino Acids

12.77

Weight (kDa)

9.72

Isoelectric Point (pI)

63.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hs1pro-1_N PF07231 1 - 101 2.9e-31 Hs1pro-1 N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0023120)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006128.1_g000015
rosa_samantha Rh2AG146000 Rh2BG151400 Rh2DG151500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 151
AclWI GGATC 1 cut(s) 262
AfaI GTAC 1 cut(s) 290
AluBI AGCT 2 cut(s) 49, 180
AluI AGCT 2 cut(s) 49, 180
Alw21I GWGCWC 2 cut(s) 144, 182
Alw26I GTCTC 2 cut(s) 10, 265
AlwI GGATC 1 cut(s) 262
Ama87I CYCGRG 1 cut(s) 158
AoxI GGCC 2 cut(s) 123, 284
ApeKI GCWGC 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 47
AvaI CYCGRG 1 cut(s) 158
BanII GRGCYC 1 cut(s) 182
Bbv12I GWGCWC 2 cut(s) 144, 182
BbvI GCAGC 1 cut(s) 97
BccI CCATC 2 cut(s) 50, 71
BceAI ACGGC 2 cut(s) 68, 271
BclI TGATCA 1 cut(s) 321
BcoDI GTCTC 2 cut(s) 10, 265
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BmeT110I CYCGRG 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 279
BmrI ACTGGG 1 cut(s) 63
BmuI ACTGGG 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 196
BpuEI CTTGAG 2 cut(s) 203, 260
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 2 cut(s) 281, 298
Bse1I ACTGG 2 cut(s) 69, 94
BseDI CCNNGG 2 cut(s) 281, 298
BseGI GGATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 2 cut(s) 69, 94
BseXI GCAGC 1 cut(s) 97
BseYI CCCAGC 1 cut(s) 20
BshFI GGCC 2 cut(s) 125, 286
BsiHKAI GWGCWC 2 cut(s) 144, 182
BsiHKCI CYCGRG 1 cut(s) 158
BsmAI GTCTC 2 cut(s) 10, 265
BsmBI CGTCTC 1 cut(s) 265
BsnI GGCC 2 cut(s) 125, 286
Bso31I GGTCTC 1 cut(s) 10
BsoBI CYCGRG 1 cut(s) 158
Bsp1286I GDGCHC 2 cut(s) 144, 182
Bsp143I GATC 2 cut(s) 267, 321
Bsp19I CCATGG 1 cut(s) 298
BspACI CCGC 1 cut(s) 151
BspANI GGCC 2 cut(s) 125, 286
BspCNI CTCAG 1 cut(s) 23
BspLI GGNNCC 1 cut(s) 279
BspPI GGATC 1 cut(s) 262
BspTNI GGTCTC 1 cut(s) 10
BsrI ACTGG 2 cut(s) 69, 94
BssECI CCNNGG 2 cut(s) 281, 298
BssMI GATC 2 cut(s) 267, 321
BssT1I CCWWGG 1 cut(s) 298
BstC8I GCNNGC 3 cut(s) 123, 127, 234
BstDEI CTNAG 1 cut(s) 10
BstDSI CCRYGG 1 cut(s) 298
BstF5I GGATG 1 cut(s) 63
BstKTI GATC 2 cut(s) 270, 324
BstMAI GTCTC 2 cut(s) 10, 265
BstMBI GATC 2 cut(s) 267, 321
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 97
BsuRI GGCC 2 cut(s) 125, 286
BtgI CCRYGG 1 cut(s) 298
BtsCI GGATG 1 cut(s) 63
Cac8I GCNNGC 3 cut(s) 123, 127, 234
Csp6I GTAC 1 cut(s) 289
CviAII CATG 1 cut(s) 299
CviJI RGCY 6 cut(s) 49, 125, 172, 180, 227, 286
CviKI_1 RGCY 6 cut(s) 49, 125, 172, 180, 227, 286
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 1 cut(s) 10
DpnI GATC 2 cut(s) 269, 323
DpnII GATC 2 cut(s) 267, 321
Ecl136II GAGCTC 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 298
Eco147I AGGCCT 1 cut(s) 125
Eco24I GRGCYC 1 cut(s) 182
Eco31I GGTCTC 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 180
Eco88I CYCGRG 1 cut(s) 158
EcoICRI GAGCTC 1 cut(s) 180
EcoT14I CCWWGG 1 cut(s) 298
EcoT38I GRGCYC 1 cut(s) 182
ErhI CCWWGG 1 cut(s) 298
Esp3I CGTCTC 1 cut(s) 265
FaeI CATG 1 cut(s) 302
FaiI YATR 3 cut(s) 17, 108, 300
FatI CATG 1 cut(s) 298
FauI CCCGC 1 cut(s) 158
FbaI TGATCA 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 50
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
GsaI CCCAGC 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 196
HaeIII GGCC 2 cut(s) 125, 286
Hin1II CATG 1 cut(s) 302
HinfI GANTC 2 cut(s) 36, 209
HphI GGTGA 1 cut(s) 47
Hpy188I TCNGA 3 cut(s) 13, 118, 282
Hpy188III TCNNGA 1 cut(s) 175
HpyAV CCTTC 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 88, 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 10
Hsp92II CATG 1 cut(s) 302
Ksp22I TGATCA 1 cut(s) 321
Kzo9I GATC 2 cut(s) 267, 321
LmnI GCTCC 3 cut(s) 134, 177, 185
LpnPI CCDG 7 cut(s) 34, 46, 82, 107, 107, 139, 160
Lsp1109I GCAGC 1 cut(s) 97
MalI GATC 2 cut(s) 269, 323
MboI GATC 2 cut(s) 267, 321
MhlI GDGCHC 2 cut(s) 144, 182
MluCI AATT 1 cut(s) 316
MlyI GAGTC 2 cut(s) 30, 218
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 4 cut(s) 19, 124, 164, 276
MwoI GCNNNNNNNGC 1 cut(s) 233
NcoI CCATGG 1 cut(s) 298
NdeII GATC 2 cut(s) 267, 321
NlaIII CATG 1 cut(s) 302
NlaIV GGNNCC 1 cut(s) 279
PceI AGGCCT 1 cut(s) 125
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 2 cut(s) 30, 217
PpsI GAGTC 2 cut(s) 30, 217
Psp124BI GAGCTC 1 cut(s) 182
PspFI CCCAGC 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 279
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SacI GAGCTC 1 cut(s) 182
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 2 cut(s) 267, 321
SchI GAGTC 2 cut(s) 30, 218
SduI GDGCHC 2 cut(s) 144, 182
SetI ASST 5 cut(s) 51, 60, 137, 182, 188
SmlI CTYRAG 2 cut(s) 218, 239
SmoI CTYRAG 2 cut(s) 218, 239
Sse9I AATT 1 cut(s) 316
SseBI AGGCCT 1 cut(s) 125
SsiI CCGC 1 cut(s) 151
SstI GAGCTC 1 cut(s) 182
StuI AGGCCT 1 cut(s) 125
StyI CCWWGG 1 cut(s) 298
TasI AATT 1 cut(s) 316
TseI GCWGC 1 cut(s) 110
TspGWI ACGGA 2 cut(s) 68, 155
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.