Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0023120

Physical Location & Seq

Genomic Coordinates Reverse (-)

12964917 .. 12965318

Gene Structure 402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG151400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGTCTCCTCAGATATACCGAGCAAGTTCCCCAGACTCTCCATCAAGCTCTATCACCTTTCCATCCCCAGTTCCTTCCGTGCCGTGCAAATCCAGTTAGACATTTCTGCTGCCTCCGAGCAGGCCTGCTCCACCTACGAGCACTACCCCCGCCTCCCCGAGCTCCGTAGGCTCTGGAGCTCCACGTACTTCCTAAAATGGAAAAGCGAGTCCATTCTCAAGTTGGCTCTGCAAGCACTTGAGATTTCGTTTCGATTCGTCTCCACGGTCCTATCGGTTCCGAGGCCGTACTCCAACCATGGACAGAGCAACATCAATTTGATCAATAAGTGGGATTTTCACAGACTTTTCAATTTGAGGCAATTGAAGTGGAATCATAGAGGAAATTGCATCTTCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hs1pro-1_C Hs1pro-1_N

Protein Analysis

133

Amino Acids

15.69

Weight (kDa)

9.95

Isoelectric Point (pI)

56.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hs1pro-1_N	PF07231	1 - 101	9.6e-33	Hs1pro-1 N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0023120)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006128.1_g000015
rosa_samantha	Rh2AG146000 Rh2BG151400 Rh2DG151500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	151
AfaI	GTAC	2 cut(s)	188, 290
AgsI	TTSAA	2 cut(s)	352, 367
AluBI	AGCT	3 cut(s)	49, 163, 180
AluI	AGCT	3 cut(s)	49, 163, 180
Alw21I	GWGCWC	3 cut(s)	144, 165, 182
Alw26I	GTCTC	2 cut(s)	10, 265
Ama87I	CYCGRG	1 cut(s)	158
AoxI	GGCC	2 cut(s)	123, 284
ApeKI	GCWGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	268
BanII	GRGCYC	2 cut(s)	165, 182
Bbv12I	GWGCWC	3 cut(s)	144, 165, 182
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	2 cut(s)	50, 71
BceAI	ACGGC	2 cut(s)	68, 271
BclI	TGATCA	1 cut(s)	321
BcoDI	GTCTC	2 cut(s)	10, 265
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	268
BmeT110I	CYCGRG	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	279
BmrI	ACTGGG	1 cut(s)	63
BmuI	ACTGGG	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	196
BpuEI	CTTGAG	2 cut(s)	203, 260
BsaAI	YACGTR	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	3 cut(s)	264, 281, 298
Bse1I	ACTGG	2 cut(s)	69, 94
BseDI	CCNNGG	3 cut(s)	264, 281, 298
BseGI	GGATG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	2 cut(s)	69, 94
BseXI	GCAGC	1 cut(s)	97
BshFI	GGCC	2 cut(s)	125, 286
BsiHKAI	GWGCWC	3 cut(s)	144, 165, 182
BsiHKCI	CYCGRG	1 cut(s)	158
BsmAI	GTCTC	2 cut(s)	10, 265
BsmBI	CGTCTC	1 cut(s)	265
BsnI	GGCC	2 cut(s)	125, 286
Bso31I	GGTCTC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	158
Bsp1286I	GDGCHC	3 cut(s)	144, 165, 182
Bsp143I	GATC	1 cut(s)	321
Bsp19I	CCATGG	1 cut(s)	298
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	2 cut(s)	125, 286
BspCNI	CTCAG	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	279
BspTNI	GGTCTC	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	69, 94
BssECI	CCNNGG	3 cut(s)	264, 281, 298
BssMI	GATC	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	298
Bst4CI	ACNGT	1 cut(s)	268
BstBAI	YACGTR	1 cut(s)	186
BstC8I	GCNNGC	3 cut(s)	123, 127, 234
BstDEI	CTNAG	1 cut(s)	10
BstDSI	CCRYGG	2 cut(s)	264, 298
BstF5I	GGATG	1 cut(s)	63
BstKTI	GATC	1 cut(s)	324
BstMAI	GTCTC	2 cut(s)	10, 265
BstMBI	GATC	1 cut(s)	321
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 233
BstV1I	GCAGC	1 cut(s)	97
BsuRI	GGCC	2 cut(s)	125, 286
BtgI	CCRYGG	2 cut(s)	264, 298
BtsCI	GGATG	1 cut(s)	63
Cac8I	GCNNGC	3 cut(s)	123, 127, 234
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	187, 289
CspCI	CAANNNNNGTGG	2 cut(s)	350, 385
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	7 cut(s)	49, 125, 163, 172, 180, 227, 286
CviKI_1	RGCY	7 cut(s)	49, 125, 163, 172, 180, 227, 286
CviQI	GTAC	2 cut(s)	187, 289
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	1 cut(s)	323
DpnII	GATC	1 cut(s)	321
Ecl136II	GAGCTC	2 cut(s)	163, 180
Eco130I	CCWWGG	1 cut(s)	298
Eco147I	AGGCCT	1 cut(s)	125
Eco24I	GRGCYC	2 cut(s)	165, 182
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	268
Eco53kI	GAGCTC	2 cut(s)	163, 180
Eco88I	CYCGRG	1 cut(s)	158
EcoICRI	GAGCTC	2 cut(s)	163, 180
EcoT14I	CCWWGG	1 cut(s)	298
EcoT38I	GRGCYC	2 cut(s)	165, 182
ErhI	CCWWGG	1 cut(s)	298
Esp3I	CGTCTC	1 cut(s)	265
FaeI	CATG	1 cut(s)	302
FaiI	YATR	3 cut(s)	17, 300, 378
FatI	CATG	1 cut(s)	298
FauI	CCCGC	1 cut(s)	158
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	2 cut(s)	165, 182
Fsp4HI	GCNGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	2 cut(s)	125, 286
Hin1II	CATG	1 cut(s)	302
HinfI	GANTC	4 cut(s)	36, 209, 255, 373
HphI	GGTGA	1 cut(s)	47
Hpy188I	TCNGA	3 cut(s)	13, 118, 282
Hpy188III	TCNNGA	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	3 cut(s)	88, 232, 390
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 233
HpyF3I	CTNAG	1 cut(s)	10
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	1 cut(s)	302
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	1 cut(s)	321
LmnI	GCTCC	4 cut(s)	134, 168, 177, 185
LpnPI	CCDG	6 cut(s)	46, 82, 107, 107, 139, 160
Lsp1109I	GCAGC	1 cut(s)	97
MaeII	ACGT	1 cut(s)	185
MalI	GATC	1 cut(s)	323
MboI	GATC	1 cut(s)	321
MboII	GAAGA	1 cut(s)	385
MfeI	CAATTG	1 cut(s)	362
MhlI	GDGCHC	3 cut(s)	144, 165, 182
MluCI	AATT	4 cut(s)	316, 352, 362, 385
MlyI	GAGTC	2 cut(s)	30, 218
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	6 cut(s)	19, 124, 164, 276, 351, 374
MunI	CAATTG	1 cut(s)	362
MwoI	GCNNNNNNNGC	2 cut(s)	169, 233
NcoI	CCATGG	1 cut(s)	298
NdeII	GATC	1 cut(s)	321
NlaIII	CATG	1 cut(s)	302
NlaIV	GGNNCC	1 cut(s)	279
PceI	AGGCCT	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	255, 373
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	2 cut(s)	30, 217
PpsI	GAGTC	2 cut(s)	30, 217
Ppu21I	YACGTR	1 cut(s)	186
Psp124BI	GAGCTC	2 cut(s)	165, 182
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	268
RsaI	GTAC	2 cut(s)	188, 290
RsaNI	GTAC	2 cut(s)	187, 289
SacI	GAGCTC	2 cut(s)	165, 182
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	321
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	2 cut(s)	30, 218
SduI	GDGCHC	3 cut(s)	144, 165, 182
SetI	ASST	6 cut(s)	51, 60, 137, 165, 182, 188
SinI	GGWCC	1 cut(s)	268
SmlI	CTYRAG	2 cut(s)	218, 239
SmoI	CTYRAG	2 cut(s)	218, 239
Sse9I	AATT	4 cut(s)	316, 352, 362, 385
SseBI	AGGCCT	1 cut(s)	125
SsiI	CCGC	1 cut(s)	151
SstI	GAGCTC	2 cut(s)	165, 182
StuI	AGGCCT	1 cut(s)	125
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	1 cut(s)	253
TasI	AATT	4 cut(s)	316, 352, 362, 385
TfiI	GAWTC	2 cut(s)	255, 373
TseI	GCWGC	1 cut(s)	110
TspGWI	ACGGA	2 cut(s)	68, 155
VpaK11BI	GGWCC	1 cut(s)	268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.