Rmu_sc0006184.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006184.1
OG0031256
Physical Location & Seq
Reverse (-)
183 .. 1985
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006184.1_g000001.1.cds

Sequence Viewer

Length: 576 bp
atgccagcaccgtggggtgcagtcgtcggggagtcccttgacatgacttcttctcaaatgctgtggacgaggagagcaccaacctcgtcacaaggttcttctctctgcctttcggaaaaggacttcttgccttacggggcattacccttgctttgctggttttcaactaggttgaagtggatttgtgatgtccgccagcatctcaaggcccaaggaatcctggaaacgactcttaagcctagccaggatgtgctaactgttaagcaagctcaagctttggaagcaaatagagcagccttggaatcaaataaggcaaaagccgtcatcctaatgactcgccatatggatgattcactccaatataagtatctaaatgaagaaaaccccagaaggctgtgggtatcactcgaagaactctttggctacgtccgtgtggcgttgtggtcagagttggagctcgaagataagcaaatgtgggatttgagggagagggatgaggtgaaaggggagaggggagagggagtggaggtggggtttgaggtggttcagaggaggaggatgagggaagcccaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

191

Amino Acids

22.03

Weight (kDa)

5.84

Isoelectric Point (pI)

52.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031256)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003252.1_g000003 Rmu_sc0006184.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 193
AflII CTTAAG 1 cut(s) 233
AgsI TTSAA 2 cut(s) 165, 175
AjnI CCWGG 2 cut(s) 219, 243
AjuI GAANNNNNNNTTGG 2 cut(s) 402, 434
AluBI AGCT 3 cut(s) 269, 275, 457
AluI AGCT 3 cut(s) 269, 275, 457
Alw21I GWGCWC 2 cut(s) 79, 459
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 511
BanII GRGCYC 1 cut(s) 459
Bbv12I GWGCWC 2 cut(s) 79, 459
BbvI GCAGC 1 cut(s) 305
BceAI ACGGC 1 cut(s) 305
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BciT130I CCWGG 2 cut(s) 221, 245
BfaI CTAG 2 cut(s) 168, 240
BfrI CTTAAG 1 cut(s) 233
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
Bme1390I CCNGG 2 cut(s) 221, 245
BmgT120I GGNCC 1 cut(s) 208
BmrFI CCNGG 2 cut(s) 221, 245
BmsI GCATC 1 cut(s) 208
BpuEI CTTGAG 2 cut(s) 188, 255
BsaJI CCNNGG 3 cut(s) 11, 211, 297
BsaXI ACNNNNNCTCC 6 cut(s) 507, 513, 518, 537, 543, 548
BseBI CCWGG 2 cut(s) 221, 245
BseDI CCNNGG 3 cut(s) 11, 211, 297
BseGI GGATG 5 cut(s) 253, 324, 352, 499, 564
BseRI GAGGAG 3 cut(s) 85, 565, 568
BseXI GCAGC 1 cut(s) 305
BsgI GTGCAG 1 cut(s) 39
BshFI GGCC 1 cut(s) 209
BsiHKAI GWGCWC 2 cut(s) 79, 459
BslFI GGGAC 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 1 cut(s) 209
Bsp1286I GDGCHC 2 cut(s) 79, 459
BspACI CCGC 1 cut(s) 193
BspANI GGCC 1 cut(s) 209
BspTI CTTAAG 1 cut(s) 233
BssECI CCNNGG 3 cut(s) 11, 211, 297
BssT1I CCWWGG 2 cut(s) 211, 297
Bst2UI CCWGG 2 cut(s) 221, 245
Bst4CI ACNGT 2 cut(s) 12, 259
BstAFI CTTAAG 1 cut(s) 233
BstC8I GCNNGC 3 cut(s) 6, 197, 267
BstDSI CCRYGG 1 cut(s) 11
BstF5I GGATG 5 cut(s) 253, 324, 352, 499, 564
BstMWI GCNNNNNNNGC 2 cut(s) 281, 290
BstNI CCWGG 2 cut(s) 221, 245
BstSCI CCNGG 2 cut(s) 219, 243
BstV1I GCAGC 1 cut(s) 305
BstXI CCANNNNNNTGG 1 cut(s) 12
BsuRI GGCC 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 11
BtsCI GGATG 5 cut(s) 253, 324, 352, 499, 564
Cac8I GCNNGC 3 cut(s) 6, 197, 267
Cfr13I GGNCC 1 cut(s) 208
CspCI CAANNNNNGTGG 2 cut(s) 44, 79
CviAII CATG 1 cut(s) 43
EciI GGCGGA 1 cut(s) 182
Ecl136II GAGCTC 1 cut(s) 457
Eco130I CCWWGG 2 cut(s) 211, 297
Eco24I GRGCYC 1 cut(s) 459
Eco53kI GAGCTC 1 cut(s) 457
EcoICRI GAGCTC 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 219, 243
EcoT14I CCWWGG 2 cut(s) 211, 297
EcoT38I GRGCYC 1 cut(s) 459
ErhI CCWWGG 2 cut(s) 211, 297
FaeI CATG 1 cut(s) 46
FaiI YATR 4 cut(s) 44, 342, 344, 363
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FaqI GGGAC 1 cut(s) 19
FatI CATG 1 cut(s) 42
FauNDI CATATG 1 cut(s) 342
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 5 cut(s) 260, 311, 359, 506, 571
FriOI GRGCYC 1 cut(s) 459
Fsp4HI GCNGC 1 cut(s) 294
FspBI CTAG 2 cut(s) 168, 240
GluI GCNGC 1 cut(s) 294
HaeIII GGCC 1 cut(s) 209
Hin1II CATG 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 273
HinfI GANTC 6 cut(s) 32, 216, 229, 302, 334, 350
HphI GGTGA 1 cut(s) 511
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 3 cut(s) 115, 448, 549
Hpy8I GTNNAC 1 cut(s) 66
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 384
HpyCH4III ACNGT 2 cut(s) 12, 259
HpyCH4IV ACGT 1 cut(s) 426
HpyCH4V TGCA 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 290
HpySE526I ACGT 1 cut(s) 426
Hsp92II CATG 1 cut(s) 46
LmnI GCTCC 1 cut(s) 454
LpnPI CCDG 8 cut(s) 18, 142, 206, 209, 230, 233, 257, 400
Lsp1109I GCAGC 1 cut(s) 305
LweI GCATC 1 cut(s) 208
MaeI CTAG 2 cut(s) 168, 240
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 1 cut(s) 87
MboII GAAGA 5 cut(s) 42, 90, 389, 422, 473
MhlI GDGCHC 2 cut(s) 79, 459
MlyI GAGTC 3 cut(s) 41, 223, 328
MmeI TCCRAC 1 cut(s) 432
MseI TTAA 2 cut(s) 234, 261
MslI CAYNNNNRTG 2 cut(s) 329, 345
MspCI CTTAAG 1 cut(s) 233
MspR9I CCNGG 2 cut(s) 221, 245
MvaI CCWGG 2 cut(s) 221, 245
MwoI GCNNNNNNNGC 2 cut(s) 281, 290
NdeI CATATG 1 cut(s) 342
NlaIII CATG 1 cut(s) 46
NmuCI GTSAC 1 cut(s) 87
PfeI GAWTC 3 cut(s) 216, 302, 350
PfoI TCCNGGA 1 cut(s) 219
PkrI GCNGC 1 cut(s) 295
PleI GAGTC 3 cut(s) 40, 223, 328
PpsI GAGTC 3 cut(s) 40, 223, 328
Psp124BI GAGCTC 1 cut(s) 459
Psp6I CCWGG 2 cut(s) 219, 243
PspGI CCWGG 2 cut(s) 219, 243
PspPI GGNCC 1 cut(s) 208
RseI CAYNNNNRTG 2 cut(s) 329, 345
SacI GAGCTC 1 cut(s) 459
SaqAI TTAA 2 cut(s) 234, 261
SatI GCNGC 1 cut(s) 294
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 3 cut(s) 41, 223, 328
ScrFI CCNGG 2 cut(s) 221, 245
SduI GDGCHC 2 cut(s) 79, 459
SfaNI GCATC 1 cut(s) 208
SmiMI CAYNNNNRTG 2 cut(s) 329, 345
SmlI CTYRAG 3 cut(s) 203, 233, 270
SmoI CTYRAG 3 cut(s) 203, 233, 270
SsiI CCGC 1 cut(s) 193
SspMI CTAG 2 cut(s) 168, 240
SstI GAGCTC 1 cut(s) 459
StyD4I CCNGG 2 cut(s) 219, 243
StyI CCWWGG 2 cut(s) 211, 297
TaaI ACNGT 2 cut(s) 12, 259
TaiI ACGT 1 cut(s) 429
TaqI TCGA 2 cut(s) 408, 459
TfiI GAWTC 3 cut(s) 216, 302, 350
Tru1I TTAA 2 cut(s) 234, 261
Tru9I TTAA 2 cut(s) 234, 261
TseFI GTSAC 1 cut(s) 87
TseI GCWGC 1 cut(s) 293
Tsp45I GTSAC 1 cut(s) 87
TspDTI ATGAA 1 cut(s) 390
TspGWI ACGGA 1 cut(s) 419
Vha464I CTTAAG 1 cut(s) 233
XspI CTAG 2 cut(s) 168, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.