Rmu_sc0006211.1_g000005

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006211.1
OG0031363
Physical Location & Seq
Forward (+)
25170 .. 26502
1333 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 711 bp
atgaagagatttggcattacacctgccaaaacaaagacagcacttaagacacttctgaaattgtatgaaaataactgggagcttatcgaagatgagcattacaaagtactttttgatgttttgatgccagaggaacagagagtggaacccaagggaaaagaaactttgatccttgaatcagagggaatgacaacttctcacaaaaaagttccatcacatgtcaaaactgaagtttctgaacttccaatcaagacattattcacaggacaagaggaaaaacatgcatcgtcactctccaaatcttccttggattcaaatccatcaagaagagcacatcagaatgatggtgattctggtgcatctcagccattactgagaagagcccgccaatttagatgccgagaagaagctttcatccgtgaatcaaagcgggaattgaaatcaaagaacaaagaagctccaccagataataatactgaagtttttgaacttccaactaagagattatacacaagacaacagaaaaaacaggcattgtccctatccaaatcatgcatggaaatacctccatcaagaagggcacatcagagtgatgatgatctgtttacagattctgaagaagctcaaccactattgaaaagaccccgcctaagagaccaggaaggagaagctatgatctgcgactcaaaggtgatgattgtttgcttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SET WIYLD

Protein Analysis

236

Amino Acids

27.15

Weight (kDa)

8.78

Isoelectric Point (pI)

68.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WIYLD PF10440 1 - 45 1.4e-13 Ubiquitin-binding WIYLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031363)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006211.1_g000005 Rmu_sc0017498.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 31
Acc36I ACCTGC 1 cut(s) 31
AciI CCGC 3 cut(s) 385, 430, 646
AclWI GGATC 1 cut(s) 163
AcuI CTGAAG 3 cut(s) 249, 498, 636
AfaI GTAC 1 cut(s) 108
AflII CTTAAG 1 cut(s) 44
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 5 cut(s) 176, 315, 439, 488, 637
AjnI CCWGG 1 cut(s) 657
AluBI AGCT 5 cut(s) 82, 410, 458, 623, 671
AluI AGCT 5 cut(s) 82, 410, 458, 623, 671
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 1 cut(s) 648
AlwI GGATC 1 cut(s) 163
AlwNI CAGNNNCTG 1 cut(s) 614
AsuHPI GGTGA 2 cut(s) 359, 703
BaeGI GKGCMC 1 cut(s) 583
BanII GRGCYC 1 cut(s) 385
Bbv12I GWGCWC 1 cut(s) 334
BccI CCATC 4 cut(s) 220, 328, 338, 577
BciT130I CCWGG 1 cut(s) 659
BcoDI GTCTC 1 cut(s) 648
BfrI CTTAAG 1 cut(s) 44
BfuAI ACCTGC 1 cut(s) 31
BmcAI AGTACT 1 cut(s) 108
Bme1390I CCNGG 1 cut(s) 659
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 659
BmrI ACTGGG 1 cut(s) 85
BmsI GCATC 4 cut(s) 114, 293, 368, 386
BmuI ACTGGG 1 cut(s) 85
BsaBI GATNNNNATC 2 cut(s) 315, 597
BsaI GGTCTC 1 cut(s) 648
BsaJI CCNNGG 2 cut(s) 150, 306
Bse1I ACTGG 1 cut(s) 80
Bse8I GATNNNNATC 2 cut(s) 315, 597
BseBI CCWGG 1 cut(s) 659
BseDI CCNNGG 2 cut(s) 150, 306
BseGI GGATG 1 cut(s) 414
BseJI GATNNNNATC 2 cut(s) 315, 597
BseMII CTCAG 2 cut(s) 365, 377
BseNI ACTGG 1 cut(s) 80
BseSI GKGCMC 1 cut(s) 583
BsiHKAI GWGCWC 1 cut(s) 334
BslFI GGGAC 1 cut(s) 523
BsmAI GTCTC 1 cut(s) 648
BsmFI GGGAC 1 cut(s) 523
Bso31I GGTCTC 1 cut(s) 648
Bsp1286I GDGCHC 3 cut(s) 334, 385, 583
Bsp143I GATC 3 cut(s) 168, 598, 675
BspACI CCGC 3 cut(s) 385, 430, 646
BspCNI CTCAG 2 cut(s) 366, 376
BspLI GGNNCC 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 31
BspPI GGATC 1 cut(s) 163
BspQI GCTCTTC 2 cut(s) 322, 373
BspTI CTTAAG 1 cut(s) 44
BspTNI GGTCTC 1 cut(s) 648
BsrI ACTGG 1 cut(s) 80
BssECI CCNNGG 2 cut(s) 150, 306
BssMI GATC 3 cut(s) 168, 598, 675
BssT1I CCWWGG 2 cut(s) 150, 306
Bst2UI CCWGG 1 cut(s) 659
Bst6I CTCTTC 2 cut(s) 322, 373
BstAFI CTTAAG 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 385
BstDEI CTNAG 4 cut(s) 363, 374, 498, 650
BstF5I GGATG 1 cut(s) 414
BstKTI GATC 3 cut(s) 171, 601, 678
BstMAI GTCTC 1 cut(s) 648
BstMBI GATC 3 cut(s) 168, 598, 675
BstNI CCWGG 1 cut(s) 659
BstNSI RCATGY 2 cut(s) 221, 284
BstSCI CCNGG 1 cut(s) 657
BstSLI GKGCMC 1 cut(s) 583
BtsCI GGATG 1 cut(s) 414
BveI ACCTGC 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 385
CaiI CAGNNNCTG 1 cut(s) 614
Csp6I GTAC 1 cut(s) 107
CviAII CATG 4 cut(s) 218, 281, 552, 556
CviJI RGCY 7 cut(s) 82, 367, 383, 410, 458, 623, 671
CviKI_1 RGCY 7 cut(s) 82, 367, 383, 410, 458, 623, 671
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 4 cut(s) 363, 374, 498, 650
DpnI GATC 3 cut(s) 170, 600, 677
DpnII GATC 3 cut(s) 168, 598, 675
Eam1104I CTCTTC 2 cut(s) 322, 373
EarI CTCTTC 2 cut(s) 322, 373
Eco130I CCWWGG 2 cut(s) 150, 306
Eco24I GRGCYC 1 cut(s) 385
Eco31I GGTCTC 1 cut(s) 648
Eco57I CTGAAG 3 cut(s) 249, 498, 636
EcoRII CCWGG 1 cut(s) 657
EcoT14I CCWWGG 2 cut(s) 150, 306
EcoT22I ATGCAT 2 cut(s) 286, 557
EcoT38I GRGCYC 1 cut(s) 385
ErhI CCWWGG 2 cut(s) 150, 306
FaeI CATG 4 cut(s) 221, 284, 555, 559
FaiI YATR 7 cut(s) 66, 219, 282, 508, 553, 557, 674
FaqI GGGAC 1 cut(s) 523
FatI CATG 4 cut(s) 217, 280, 551, 555
FauI CCCGC 3 cut(s) 392, 423, 653
FokI GGATG 1 cut(s) 401
FriOI GRGCYC 1 cut(s) 385
Hin1II CATG 4 cut(s) 221, 284, 555, 559
HindIII AAGCTT 1 cut(s) 408
HinfI GANTC 6 cut(s) 176, 311, 350, 422, 611, 683
HphI GGTGA 2 cut(s) 359, 703
Hpy166II GTNNAC 1 cut(s) 606
Hpy188I TCNGA 6 cut(s) 57, 181, 238, 339, 588, 616
Hpy188III TCNNGA 3 cut(s) 250, 324, 573
Hpy8I GTNNAC 1 cut(s) 606
HpyAV CCTTC 2 cut(s) 570, 656
HpyCH4V TGCA 3 cut(s) 284, 359, 555
HpyF3I CTNAG 4 cut(s) 363, 374, 498, 650
Hsp92II CATG 4 cut(s) 221, 284, 555, 559
Kzo9I GATC 3 cut(s) 168, 598, 675
LguI GCTCTTC 2 cut(s) 322, 373
LmnI GCTCC 2 cut(s) 79, 463
LpnPI CCDG 9 cut(s) 36, 61, 141, 249, 339, 477, 515, 644, 671
LweI GCATC 4 cut(s) 114, 293, 368, 386
MaeIII GTNAC 1 cut(s) 288
MalI GATC 3 cut(s) 170, 600, 677
MboI GATC 3 cut(s) 168, 598, 675
MboII GAAGA 7 cut(s) 16, 101, 294, 339, 390, 416, 629
MhlI GDGCHC 3 cut(s) 334, 385, 583
MluCI AATT 3 cut(s) 59, 389, 434
MlyI GAGTC 1 cut(s) 677
MmeI TCCRAC 1 cut(s) 518
MnlI CCTC 4 cut(s) 124, 175, 265, 576
Mph1103I ATGCAT 2 cut(s) 286, 557
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 2 cut(s) 339, 588
MspCI CTTAAG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 659
MvaI CCWGG 1 cut(s) 659
NdeII GATC 3 cut(s) 168, 598, 675
NlaIII CATG 4 cut(s) 221, 284, 555, 559
NlaIV GGNNCC 1 cut(s) 147
NmeAIII GCCGAG 1 cut(s) 425
NmuCI GTSAC 1 cut(s) 288
NsiI ATGCAT 2 cut(s) 286, 557
NspI RCATGY 2 cut(s) 221, 284
PaqCI CACCTGC 1 cut(s) 31
PciI ACATGT 1 cut(s) 217
PciSI GCTCTTC 2 cut(s) 322, 373
PfeI GAWTC 5 cut(s) 176, 311, 350, 422, 611
PleI GAGTC 1 cut(s) 677
PpsI GAGTC 1 cut(s) 677
PscI ACATGT 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 657
PspGI CCWGG 1 cut(s) 657
PspN4I GGNNCC 1 cut(s) 147
PstNI CAGNNNCTG 1 cut(s) 614
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
RseI CAYNNNNRTG 2 cut(s) 339, 588
SapI GCTCTTC 2 cut(s) 322, 373
SaqAI TTAA 1 cut(s) 45
Sau3AI GATC 3 cut(s) 168, 598, 675
ScaI AGTACT 1 cut(s) 108
SchI GAGTC 1 cut(s) 677
ScrFI CCNGG 1 cut(s) 659
SduI GDGCHC 3 cut(s) 334, 385, 583
SetI ASST 8 cut(s) 25, 84, 412, 460, 568, 625, 673, 693
SfaNI GCATC 4 cut(s) 114, 293, 368, 386
SmiMI CAYNNNNRTG 2 cut(s) 339, 588
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 3 cut(s) 59, 389, 434
SsiI CCGC 3 cut(s) 385, 430, 646
StyD4I CCNGG 1 cut(s) 657
StyI CCWWGG 2 cut(s) 150, 306
TaqI TCGA 1 cut(s) 87
TasI AATT 3 cut(s) 59, 389, 434
TatI WGTACW 1 cut(s) 106
TfiI GAWTC 5 cut(s) 176, 311, 350, 422, 611
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseFI GTSAC 1 cut(s) 288
Tsp45I GTSAC 1 cut(s) 288
TspDTI ATGAA 3 cut(s) 17, 81, 403
TspGWI ACGGA 1 cut(s) 407
Vha464I CTTAAG 1 cut(s) 44
XceI RCATGY 2 cut(s) 221, 284
XcmI CCANNNNNNNNNTGG 2 cut(s) 304, 553
ZrmI AGTACT 1 cut(s) 108
Zsp2I ATGCAT 2 cut(s) 286, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.