Rmu_sc0017498.1_g000001

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017498.1
OG0031363
Physical Location & Seq
Forward (+)
4569 .. 5963
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017498.1_g000001.1.cds

Sequence Viewer

Length: 753 bp
atgaagccaagagatcgcaaaattataaatgcctgtagtgcaatgaagagatttggcattacacctgccaaaacaaagacagcacttaagacacttctgaaattgtatgaaaataactgggagcttatcgaagatgagcattacaaagtactttttgatgttttgatgccagaggaacagagagtggaacccaagggaaaagaaactttgatccttgaatcagagggaatgacaacttctcacaaaaaagttccatcacatgtcaaaactgaagtttctgaacttccaatcaagacattattcacaggacaagaggaaaaacatgcatcgtcactctccaaatcttccttggattcaaatccatcaagaagagcacatcagaatgatggtgattctggtgcatctcagccattactgagaagagcccgccaatttagatgccgagaagaagctttcatccgtgaatcaaagcgggaattgaaatcaaagaacaaagaagctccaccagataataatactgaagtttttgaacttccaactaagagattatacacaagacaacagaaaaaacaggcattgtccctatccaaatcatgcatggaaatacctccatcaagaagggcacatcagagtgatgatgatctgtttacagattctgaagaagctcaaccactattgaaaagaccccgcctaagagaccaggaaggagaagctatgatctgcgactcaaaggtgatgattgtttgcttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SET WIYLD

Protein Analysis

250

Amino Acids

28.73

Weight (kDa)

9.1

Isoelectric Point (pI)

65.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031363)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006211.1_g000005 Rmu_sc0017498.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 26
AarI CACCTGC 1 cut(s) 73
Acc36I ACCTGC 1 cut(s) 73
AciI CCGC 3 cut(s) 427, 472, 688
AclWI GGATC 1 cut(s) 205
AcuI CTGAAG 3 cut(s) 291, 540, 678
AfaI GTAC 1 cut(s) 150
AflII CTTAAG 1 cut(s) 86
AflIII ACRYGT 1 cut(s) 259
AgsI TTSAA 5 cut(s) 218, 357, 481, 530, 679
AjnI CCWGG 1 cut(s) 699
AluBI AGCT 5 cut(s) 124, 452, 500, 665, 713
AluI AGCT 5 cut(s) 124, 452, 500, 665, 713
Alw21I GWGCWC 1 cut(s) 376
Alw26I GTCTC 1 cut(s) 690
AlwI GGATC 1 cut(s) 205
AlwNI CAGNNNCTG 1 cut(s) 656
AsuHPI GGTGA 2 cut(s) 401, 745
BaeGI GKGCMC 1 cut(s) 625
BanII GRGCYC 1 cut(s) 427
Bbv12I GWGCWC 1 cut(s) 376
BccI CCATC 4 cut(s) 262, 370, 380, 619
BciT130I CCWGG 1 cut(s) 701
BcoDI GTCTC 1 cut(s) 690
BfmI CTRYAG 1 cut(s) 34
BfrI CTTAAG 1 cut(s) 86
BfuAI ACCTGC 1 cut(s) 73
BmcAI AGTACT 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 701
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 701
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 4 cut(s) 156, 335, 410, 428
BmuI ACTGGG 1 cut(s) 127
BsaBI GATNNNNATC 2 cut(s) 357, 639
BsaI GGTCTC 1 cut(s) 690
BsaJI CCNNGG 2 cut(s) 192, 348
Bse1I ACTGG 1 cut(s) 122
Bse3DI GCAATG 1 cut(s) 48
Bse8I GATNNNNATC 2 cut(s) 357, 639
BseBI CCWGG 1 cut(s) 701
BseDI CCNNGG 2 cut(s) 192, 348
BseGI GGATG 1 cut(s) 456
BseJI GATNNNNATC 2 cut(s) 357, 639
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 407, 419
BseNI ACTGG 1 cut(s) 122
BseSI GKGCMC 1 cut(s) 625
BsiHKAI GWGCWC 1 cut(s) 376
BslFI GGGAC 1 cut(s) 565
BsmAI GTCTC 1 cut(s) 690
BsmFI GGGAC 1 cut(s) 565
Bso31I GGTCTC 1 cut(s) 690
Bsp1286I GDGCHC 3 cut(s) 376, 427, 625
Bsp143I GATC 4 cut(s) 13, 210, 640, 717
BspACI CCGC 3 cut(s) 427, 472, 688
BspCNI CTCAG 2 cut(s) 408, 418
BspLI GGNNCC 1 cut(s) 189
BspMI ACCTGC 1 cut(s) 73
BspPI GGATC 1 cut(s) 205
BspQI GCTCTTC 2 cut(s) 364, 415
BspTI CTTAAG 1 cut(s) 86
BspTNI GGTCTC 1 cut(s) 690
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 1 cut(s) 122
BssECI CCNNGG 2 cut(s) 192, 348
BssMI GATC 4 cut(s) 13, 210, 640, 717
BssT1I CCWWGG 2 cut(s) 192, 348
Bst2UI CCWGG 1 cut(s) 701
Bst6I CTCTTC 3 cut(s) 41, 364, 415
BstAFI CTTAAG 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 427
BstDEI CTNAG 4 cut(s) 405, 416, 540, 692
BstF5I GGATG 1 cut(s) 456
BstKTI GATC 4 cut(s) 16, 213, 643, 720
BstMAI GTCTC 1 cut(s) 690
BstMBI GATC 4 cut(s) 13, 210, 640, 717
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 701
BstNSI RCATGY 2 cut(s) 263, 326
BstSCI CCNGG 1 cut(s) 699
BstSFI CTRYAG 1 cut(s) 34
BstSLI GKGCMC 1 cut(s) 625
BtsCI GGATG 1 cut(s) 456
BveI ACCTGC 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 427
CaiI CAGNNNCTG 1 cut(s) 656
Csp6I GTAC 1 cut(s) 149
CviAII CATG 4 cut(s) 260, 323, 594, 598
CviJI RGCY 8 cut(s) 7, 124, 409, 425, 452, 500, 665, 713
CviKI_1 RGCY 8 cut(s) 7, 124, 409, 425, 452, 500, 665, 713
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 4 cut(s) 405, 416, 540, 692
DpnI GATC 4 cut(s) 15, 212, 642, 719
DpnII GATC 4 cut(s) 13, 210, 640, 717
Eam1104I CTCTTC 3 cut(s) 41, 364, 415
EarI CTCTTC 3 cut(s) 41, 364, 415
Eco130I CCWWGG 2 cut(s) 192, 348
Eco24I GRGCYC 1 cut(s) 427
Eco31I GGTCTC 1 cut(s) 690
Eco57I CTGAAG 3 cut(s) 291, 540, 678
EcoRII CCWGG 1 cut(s) 699
EcoT14I CCWWGG 2 cut(s) 192, 348
EcoT22I ATGCAT 2 cut(s) 328, 599
EcoT38I GRGCYC 1 cut(s) 427
ErhI CCWWGG 2 cut(s) 192, 348
FaeI CATG 4 cut(s) 263, 326, 597, 601
FaiI YATR 8 cut(s) 26, 108, 261, 324, 550, 595, 599, 716
FaqI GGGAC 1 cut(s) 565
FatI CATG 4 cut(s) 259, 322, 593, 597
FauI CCCGC 3 cut(s) 434, 465, 695
FokI GGATG 1 cut(s) 443
FriOI GRGCYC 1 cut(s) 427
Hin1II CATG 4 cut(s) 263, 326, 597, 601
HindIII AAGCTT 1 cut(s) 450
HinfI GANTC 6 cut(s) 218, 353, 392, 464, 653, 725
HphI GGTGA 2 cut(s) 401, 745
Hpy166II GTNNAC 1 cut(s) 648
Hpy188I TCNGA 6 cut(s) 99, 223, 280, 381, 630, 658
Hpy188III TCNNGA 3 cut(s) 292, 366, 615
Hpy8I GTNNAC 1 cut(s) 648
HpyAV CCTTC 2 cut(s) 612, 698
HpyCH4V TGCA 4 cut(s) 41, 326, 401, 597
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 4 cut(s) 405, 416, 540, 692
Hsp92II CATG 4 cut(s) 263, 326, 597, 601
Kzo9I GATC 4 cut(s) 13, 210, 640, 717
LguI GCTCTTC 2 cut(s) 364, 415
LmnI GCTCC 2 cut(s) 121, 505
LweI GCATC 4 cut(s) 156, 335, 410, 428
MaeIII GTNAC 1 cut(s) 330
MalI GATC 4 cut(s) 15, 212, 642, 719
MboI GATC 4 cut(s) 13, 210, 640, 717
MboII GAAGA 7 cut(s) 58, 143, 336, 381, 432, 458, 671
MhlI GDGCHC 3 cut(s) 376, 427, 625
MluCI AATT 4 cut(s) 21, 101, 431, 476
MlyI GAGTC 1 cut(s) 719
MmeI TCCRAC 1 cut(s) 560
MnlI CCTC 4 cut(s) 166, 217, 307, 618
Mph1103I ATGCAT 2 cut(s) 328, 599
MseI TTAA 1 cut(s) 87
MslI CAYNNNNRTG 2 cut(s) 381, 630
MspCI CTTAAG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 701
MvaI CCWGG 1 cut(s) 701
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeII GATC 4 cut(s) 13, 210, 640, 717
NlaIII CATG 4 cut(s) 263, 326, 597, 601
NlaIV GGNNCC 1 cut(s) 189
NmeAIII GCCGAG 1 cut(s) 467
NmuCI GTSAC 1 cut(s) 330
NsiI ATGCAT 2 cut(s) 328, 599
NspI RCATGY 2 cut(s) 263, 326
PaqCI CACCTGC 1 cut(s) 73
PciI ACATGT 1 cut(s) 259
PciSI GCTCTTC 2 cut(s) 364, 415
PfeI GAWTC 5 cut(s) 218, 353, 392, 464, 653
PleI GAGTC 1 cut(s) 719
PpsI GAGTC 1 cut(s) 719
PscI ACATGT 1 cut(s) 259
PsiI TTATAA 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 699
PspGI CCWGG 1 cut(s) 699
PspN4I GGNNCC 1 cut(s) 189
PstNI CAGNNNCTG 1 cut(s) 656
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
RseI CAYNNNNRTG 2 cut(s) 381, 630
SapI GCTCTTC 2 cut(s) 364, 415
SaqAI TTAA 1 cut(s) 87
Sau3AI GATC 4 cut(s) 13, 210, 640, 717
ScaI AGTACT 1 cut(s) 150
SchI GAGTC 1 cut(s) 719
ScrFI CCNGG 1 cut(s) 701
SduI GDGCHC 3 cut(s) 376, 427, 625
SetI ASST 8 cut(s) 67, 126, 454, 502, 610, 667, 715, 735
SfaNI GCATC 4 cut(s) 156, 335, 410, 428
SfcI CTRYAG 1 cut(s) 34
SmiMI CAYNNNNRTG 2 cut(s) 381, 630
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 4 cut(s) 21, 101, 431, 476
SsiI CCGC 3 cut(s) 427, 472, 688
StyD4I CCNGG 1 cut(s) 699
StyI CCWWGG 2 cut(s) 192, 348
TaqI TCGA 1 cut(s) 129
TasI AATT 4 cut(s) 21, 101, 431, 476
TatI WGTACW 1 cut(s) 148
TfiI GAWTC 5 cut(s) 218, 353, 392, 464, 653
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TseFI GTSAC 1 cut(s) 330
Tsp45I GTSAC 1 cut(s) 330
TspDTI ATGAA 4 cut(s) 17, 59, 123, 445
TspGWI ACGGA 1 cut(s) 449
Vha464I CTTAAG 1 cut(s) 86
XceI RCATGY 2 cut(s) 263, 326
XcmI CCANNNNNNNNNTGG 2 cut(s) 346, 595
ZrmI AGTACT 1 cut(s) 150
Zsp2I ATGCAT 2 cut(s) 328, 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.