Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006223.1

Orthogroup ID

OG0031364

Physical Location & Seq

Genomic Coordinates Reverse (-)

240577 .. 241425

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atgacaggtgtaccctcaatccccggaatagaacgatccctacttacttatactactaacgacatttcagggttaaattatgcgctccctaaaggcgcatcacctaccgcctccccaagctcatctccgacaccaagaaggagatcaacaactgcttcgactcgccgtctgataaccttcggctggtggggcccgattggccagaacatgctcgacggctctgacgcagtttcgaaggtcgggttcgagtcggtggggcggttgtttcaggagttcgataccaaaaggatgagcagactcgccggagataagttgatagatagtgagaattcgcttgcgattcgatctaattgggtctcttcaatggtggacttcttctggaagaagcggagtgctctaatggcgaggtcgttggttttgccggtggagagtttcagggccacggtttttccgattgtgtatgccgttaaggctgtggcctccggctccttcgaggtcataaggaagctatccaagtcttctggtggttctaatgcgattattgtggatagtaatgccgagaggttcgtcggagtttcgaatgtggtgacgcatttggtgctcgttttggcctggtctttggatccagctttgatttttgaggtggggattgacatgttatacttggctgatgttcctggtgggaagcctgagtgggcttcgcaatccattattgcaattctcacactttgggataggctgcttcagctagggaaagtattgttagagctgttgttacaaatcttcatcttcttaatcttcatatgcaggtatgcttacttgagttatgattggatattgggactataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

282

Amino Acids

31.03

Weight (kDa)

9.35

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031364)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006223.1_g000048
rosa_samantha	Rh6CG151500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	798
AciI	CCGC	3 cut(s)	108, 259, 388
AclWI	GGATC	3 cut(s)	30, 617, 630
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	328
AcuI	CTGAAG	1 cut(s)	728
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	183
AflIII	ACRYGT	1 cut(s)	654
AgsI	TTSAA	1 cut(s)	363
AhdI	GACNNNNNGTC	1 cut(s)	165
AjnI	CCWGG	2 cut(s)	611, 676
AluBI	AGCT	5 cut(s)	120, 508, 629, 748, 769
AluI	AGCT	5 cut(s)	120, 508, 629, 748, 769
Alw21I	GWGCWC	2 cut(s)	397, 603
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	3 cut(s)	30, 617, 630
AoxI	GGCC	5 cut(s)	190, 199, 438, 477, 609
ApaI	GGGCCC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	739
ApoI	RAATTY	1 cut(s)	328
AspLEI	GCGC	2 cut(s)	85, 98
AspS9I	GGNCC	3 cut(s)	190, 191, 438
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	2 cut(s)	93, 598
AsuII	TTCGAA	2 cut(s)	233, 578
BaeGI	GKGCMC	1 cut(s)	194
BaeI	ACNNNNGTAYC	1 cut(s)	27
BalI	TGGCCA	1 cut(s)	201
BamHI	GGATCC	1 cut(s)	622
BanII	GRGCYC	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	510
Bbv12I	GWGCWC	2 cut(s)	397, 603
BbvI	GCAGC	1 cut(s)	726
BceAI	ACGGC	3 cut(s)	150, 232, 449
BciT130I	CCWGG	2 cut(s)	613, 678
BcnI	CCSGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	1 cut(s)	749
BfuAI	ACCTGC	1 cut(s)	798
BglI	GCCNNNNNGGC	2 cut(s)	198, 470
BisI	GCNGC	1 cut(s)	740
BlsI	GCNGC	1 cut(s)	741
Bme1390I	CCNGG	3 cut(s)	24, 613, 678
BmeRI	GACNNNNNGTC	1 cut(s)	165
BmgT120I	GGNCC	3 cut(s)	190, 191, 438
BmiI	GGNNCC	4 cut(s)	191, 192, 487, 624
BmrFI	CCNGG	3 cut(s)	24, 613, 678
BmsI	GCATC	1 cut(s)	107
BpiI	GAAGAC	1 cut(s)	510
Bpu14I	TTCGAA	2 cut(s)	233, 578
BpuEI	CTTGAG	1 cut(s)	841
BpuMI	CCSGG	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	361
BsaJI	CCNNGG	2 cut(s)	22, 441
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse118I	RCCGGY	1 cut(s)	421
BseBI	CCWGG	2 cut(s)	613, 678
BseDI	CCNNGG	2 cut(s)	22, 441
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	681
BseSI	GKGCMC	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	726
BshFI	GGCC	5 cut(s)	192, 201, 440, 479, 611
BsiHKAI	GWGCWC	2 cut(s)	397, 603
BsiSI	CCGG	4 cut(s)	24, 303, 422, 483
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmAI	GTCTC	1 cut(s)	361
BsnI	GGCC	5 cut(s)	192, 201, 440, 479, 611
Bso31I	GGTCTC	1 cut(s)	361
Bsp119I	TTCGAA	2 cut(s)	233, 578
Bsp120I	GGGCCC	1 cut(s)	190
Bsp1286I	GDGCHC	3 cut(s)	194, 397, 603
Bsp143I	GATC	4 cut(s)	35, 143, 344, 622
BspACI	CCGC	3 cut(s)	108, 259, 388
BspANI	GGCC	5 cut(s)	192, 201, 440, 479, 611
BspCNI	CTCAG	1 cut(s)	682
BspLI	GGNNCC	4 cut(s)	191, 192, 487, 624
BspMI	ACCTGC	1 cut(s)	798
BspPI	GGATC	3 cut(s)	30, 617, 630
BspT104I	TTCGAA	2 cut(s)	233, 578
BspTNI	GGTCTC	1 cut(s)	361
BsrFI	RCCGGY	1 cut(s)	421
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	2 cut(s)	22, 441
BssMI	GATC	4 cut(s)	35, 143, 344, 622
Bst2UI	CCWGG	2 cut(s)	613, 678
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	1 cut(s)	364
BstAPI	GCANNNNNTGC	1 cut(s)	598
BstBI	TTCGAA	2 cut(s)	233, 578
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	1 cut(s)	690
BstDSI	CCRYGG	1 cut(s)	441
BstF5I	GGATG	1 cut(s)	294
BstHHI	GCGC	2 cut(s)	85, 98
BstKTI	GATC	4 cut(s)	38, 146, 347, 625
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	4 cut(s)	35, 143, 344, 622
BstMWI	GCNNNNNNNGC	6 cut(s)	189, 198, 401, 470, 598, 745
BstNI	CCWGG	2 cut(s)	613, 678
BstNSI	RCATGY	2 cut(s)	211, 658
BstSCI	CCNGG	3 cut(s)	22, 611, 676
BstSLI	GKGCMC	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	726
BstV2I	GAAGAC	1 cut(s)	510
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BsuRI	GGCC	5 cut(s)	192, 201, 440, 479, 611
BtgI	CCRYGG	1 cut(s)	441
BtsCI	GGATG	1 cut(s)	294
BveI	ACCTGC	1 cut(s)	798
Cac8I	GCNNGC	1 cut(s)	336
CfoI	GCGC	2 cut(s)	85, 98
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	3 cut(s)	190, 191, 438
CseI	GACGC	2 cut(s)	233, 598
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	2 cut(s)	208, 655
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	1 cut(s)	690
DpnI	GATC	4 cut(s)	37, 145, 346, 624
DpnII	GATC	4 cut(s)	35, 143, 344, 622
DriI	GACNNNNNGTC	1 cut(s)	165
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	364
Eam1105I	GACNNNNNGTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	194
Eco31I	GGTCTC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	728
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRI	GAATTC	1 cut(s)	328
EcoRII	CCWGG	2 cut(s)	611, 676
EcoT38I	GRGCYC	1 cut(s)	194
FaeI	CATG	2 cut(s)	211, 658
FatI	CATG	2 cut(s)	207, 654
FauNDI	CATATG	1 cut(s)	803
Fnu4HI	GCNGC	1 cut(s)	740
FokI	GGATG	1 cut(s)	301
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	1 cut(s)	740
FspBI	CTAG	1 cut(s)	749
GlaI	GCGC	2 cut(s)	84, 97
GluI	GCNGC	1 cut(s)	740
HaeIII	GGCC	5 cut(s)	192, 201, 440, 479, 611
HapII	CCGG	4 cut(s)	24, 303, 422, 483
HgaI	GACGC	2 cut(s)	233, 598
HhaI	GCGC	2 cut(s)	85, 98
Hin1II	CATG	2 cut(s)	211, 658
Hin6I	GCGC	2 cut(s)	83, 96
HinP1I	GCGC	2 cut(s)	83, 96
HinfI	GANTC	4 cut(s)	160, 248, 297, 340
HpaII	CCGG	4 cut(s)	24, 303, 422, 483
HphI	GGTGA	2 cut(s)	93, 598
Hpy166II	GTNNAC	2 cut(s)	11, 370
Hpy188I	TCNGA	5 cut(s)	129, 171, 223, 453, 572
Hpy188III	TCNNGA	2 cut(s)	269, 379
Hpy8I	GTNNAC	2 cut(s)	11, 370
Hpy99I	CGWCG	2 cut(s)	218, 572
HpyAV	CCTTC	4 cut(s)	132, 187, 229, 499
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4V	TGCA	2 cut(s)	716, 807
HpyF10VI	GCNNNNNNNGC	6 cut(s)	189, 198, 401, 470, 598, 745
HpyF3I	CTNAG	1 cut(s)	690
Hsp92II	CATG	2 cut(s)	211, 658
HspAI	GCGC	2 cut(s)	83, 96
Kzo9I	GATC	4 cut(s)	35, 143, 344, 622
LmnI	GCTCC	2 cut(s)	90, 491
Lsp1109I	GCAGC	1 cut(s)	726
LweI	GCATC	1 cut(s)	107
MaeI	CTAG	1 cut(s)	749
MaeIII	GTNAC	2 cut(s)	586, 774
MalI	GATC	4 cut(s)	37, 145, 346, 624
MboI	GATC	4 cut(s)	35, 143, 344, 622
MboII	GAAGA	7 cut(s)	351, 367, 394, 510, 775, 781, 790
MflI	RGATCY	1 cut(s)	622
MhlI	GDGCHC	3 cut(s)	194, 397, 603
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	4 cut(s)	76, 328, 349, 717
MluNI	TGGCCA	1 cut(s)	201
MlyI	GAGTC	3 cut(s)	154, 257, 291
MmeI	TCCRAC	2 cut(s)	152, 550
MnlI	CCTC	7 cut(s)	25, 121, 399, 487, 490, 555, 634
Mox20I	TGGCCA	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	201
MseI	TTAA	3 cut(s)	74, 468, 794
Msp20I	TGGCCA	1 cut(s)	201
MspI	CCGG	4 cut(s)	24, 303, 422, 483
MspR9I	CCNGG	3 cut(s)	24, 613, 678
MvaI	CCWGG	2 cut(s)	613, 678
MwoI	GCNNNNNNNGC	6 cut(s)	189, 198, 401, 470, 598, 745
NciI	CCSGG	1 cut(s)	24
NdeI	CATATG	1 cut(s)	803
NdeII	GATC	4 cut(s)	35, 143, 344, 622
NlaIII	CATG	2 cut(s)	211, 658
NlaIV	GGNNCC	4 cut(s)	191, 192, 487, 624
NmeAIII	GCCGAG	1 cut(s)	583
NmuCI	GTSAC	1 cut(s)	586
NspI	RCATGY	2 cut(s)	211, 658
NspV	TTCGAA	2 cut(s)	233, 578
PciI	ACATGT	1 cut(s)	654
PcsI	WCGNNNNNNNCGW	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	340
PkrI	GCNGC	1 cut(s)	741
PleI	GAGTC	3 cut(s)	154, 256, 291
PpsI	GAGTC	3 cut(s)	154, 256, 291
PscI	ACATGT	1 cut(s)	654
Psp6I	CCWGG	2 cut(s)	611, 676
PspGI	CCWGG	2 cut(s)	611, 676
PspN4I	GGNNCC	4 cut(s)	191, 192, 487, 624
PspOMI	GGGCCC	1 cut(s)	190
PspPI	GGNCC	3 cut(s)	190, 191, 438
PsrI	GAACNNNNNNTAC	2 cut(s)	24, 56
PsuI	RGATCY	1 cut(s)	622
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
SaqAI	TTAA	3 cut(s)	74, 468, 794
SatI	GCNGC	1 cut(s)	740
Sau3AI	GATC	4 cut(s)	35, 143, 344, 622
Sau96I	GGNCC	3 cut(s)	190, 191, 438
SchI	GAGTC	3 cut(s)	154, 257, 291
ScrFI	CCNGG	3 cut(s)	24, 613, 678
SduI	GDGCHC	3 cut(s)	194, 397, 603
SfaNI	GCATC	1 cut(s)	107
SfiI	GGCCNNNNNGGCC	1 cut(s)	198
SfuI	TTCGAA	2 cut(s)	233, 578
SmlI	CTYRAG	1 cut(s)	820
SmoI	CTYRAG	1 cut(s)	820
Sse9I	AATT	4 cut(s)	76, 328, 349, 717
SsiI	CCGC	3 cut(s)	108, 259, 388
SspMI	CTAG	1 cut(s)	749
StyD4I	CCNGG	3 cut(s)	22, 611, 676
TaaI	ACNGT	1 cut(s)	445
TaqI	TCGA	8 cut(s)	158, 213, 233, 246, 276, 343, 492, 578
TasI	AATT	4 cut(s)	76, 328, 349, 717
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	3 cut(s)	74, 468, 794
Tru9I	TTAA	3 cut(s)	74, 468, 794
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	1 cut(s)	739
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	2 cut(s)	775, 790
XapI	RAATTY	1 cut(s)	328
XceI	RCATGY	2 cut(s)	211, 658
XspI	CTAG	1 cut(s)	749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.