Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0031364

Physical Location & Seq

Genomic Coordinates Reverse (-)

19765693 .. 19766481

Gene Structure 789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG151500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTCAGCGCCGCCGCCATCTCGATCCTCGCCGCCATCCCCTCCTACTGCCTCCCCAAGCTCATCTCCGACACCAAGAAGGAGATTAACAACTGCTTCGACTCGCCGTCTGATAACCTTCGACTGGTGGGGCCGGATCGGCCAGAACATGCTCGACGGCTCCGACGCCGTTTCGAAGGTCGGGTTCGAGTCGGTGGGGCAGTTGTTTCAGGAGTTCGATACCAAAAGGATGAGCAGACTCGCCGGAGATAAGTTGATAGATAGTGAGAATTCACTTGCGATTCGATCTAATTGGGTCTCTTCAATGGTGGACTTCGTCTGGAAGAAGCGGAGTGCTCTAATGGCGAGGTCGTTGGTTTTGCCGGTGGAGAGTTTCAGGGCCACGGTGTTTCCGATTGTCTTTGCTGTTAAGGCTGTGGCCTCCGGCTCCGTCGAGGTCATAAGGAAGCTATCCAAGTCTTCTGGTGGTTCTAATGCGACTATTGTGGATAGTAATGCCGAGAGGTTTGTCGGAGTTTCGAATGTGGTGACGCATTTGGTGCTCTTTTTGGCCTGGTCTTTGGATCCAGCTTTGATTTTTGAGGTGGGGATTGACATGTTGTACTTGGCTGATGTTCCTGGTGGGAAGCCTGAGTGGGCTTCGCAATCCATTATTGCAATTCTCACACTTTTGGATAGGCTGCTTCAGCTAGGGAAAGTATTGTTAGAGCTGTTGTTACAAATCTTCATCTTCTTAATCTTCATATGCAGGTATGCTTACTTGAGTTATGATTGGATATTGGGACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

262

Amino Acids

28.86

Weight (kDa)

9.47

Isoelectric Point (pI)

55.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031364)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006223.1_g000048
rosa_samantha	Rh6CG151500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	738
AciI	CCGC	4 cut(s)	11, 14, 32, 328
AclWI	GGATC	4 cut(s)	18, 143, 557, 570
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	268
AcuI	CTGAAG	1 cut(s)	668
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	1 cut(s)	602
AfiI	CCNNNNNNNGG	1 cut(s)	123
AflIII	ACRYGT	1 cut(s)	594
AgsI	TTSAA	1 cut(s)	303
AhdI	GACNNNNNGTC	1 cut(s)	105
AjnI	CCWGG	2 cut(s)	551, 616
AluBI	AGCT	5 cut(s)	60, 448, 569, 688, 709
AluI	AGCT	5 cut(s)	60, 448, 569, 688, 709
Alw21I	GWGCWC	2 cut(s)	337, 543
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	4 cut(s)	18, 143, 557, 570
AoxI	GGCC	5 cut(s)	130, 139, 378, 417, 549
ApeKI	GCWGC	1 cut(s)	679
ApoI	RAATTY	1 cut(s)	268
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	2 cut(s)	130, 378
AsuHPI	GGTGA	1 cut(s)	538
AsuII	TTCGAA	2 cut(s)	173, 518
BamHI	GGATCC	1 cut(s)	562
BbsI	GAAGAC	1 cut(s)	450
Bbv12I	GWGCWC	2 cut(s)	337, 543
BbvI	GCAGC	1 cut(s)	666
BccI	CCATC	2 cut(s)	25, 43
BceAI	ACGGC	3 cut(s)	90, 152, 172
BciT130I	CCWGG	2 cut(s)	553, 618
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	1 cut(s)	689
BfoI	RGCGCY	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	738
BglI	GCCNNNNNGGC	1 cut(s)	138
BisI	GCNGC	4 cut(s)	11, 14, 32, 680
BlsI	GCNGC	4 cut(s)	12, 15, 33, 681
Bme1390I	CCNGG	2 cut(s)	553, 618
BmeRI	GACNNNNNGTC	1 cut(s)	105
BmgT120I	GGNCC	2 cut(s)	130, 378
BmiI	GGNNCC	4 cut(s)	131, 160, 427, 564
BmrFI	CCNGG	2 cut(s)	553, 618
BpiI	GAAGAC	1 cut(s)	450
Bpu14I	TTCGAA	2 cut(s)	173, 518
BpuEI	CTTGAG	1 cut(s)	781
BsaHI	GRCGYC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	301
BsaJI	CCNNGG	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse118I	RCCGGY	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	553, 618
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	2 cut(s)	35, 234
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	621
BseNI	ACTGG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	666
BshFI	GGCC	5 cut(s)	132, 141, 380, 419, 551
BsiHKAI	GWGCWC	2 cut(s)	337, 543
BsiSI	CCGG	4 cut(s)	133, 243, 362, 423
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	301
BsnI	GGCC	5 cut(s)	132, 141, 380, 419, 551
Bso31I	GGTCTC	1 cut(s)	301
Bsp119I	TTCGAA	2 cut(s)	173, 518
Bsp1286I	GDGCHC	2 cut(s)	337, 543
Bsp143I	GATC	4 cut(s)	23, 135, 284, 562
BspACI	CCGC	4 cut(s)	11, 14, 32, 328
BspANI	GGCC	5 cut(s)	132, 141, 380, 419, 551
BspCNI	CTCAG	1 cut(s)	622
BspLI	GGNNCC	4 cut(s)	131, 160, 427, 564
BspMI	ACCTGC	1 cut(s)	738
BspPI	GGATC	4 cut(s)	18, 143, 557, 570
BspT104I	TTCGAA	2 cut(s)	173, 518
BspTNI	GGTCTC	1 cut(s)	301
BsrFI	RCCGGY	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	361
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	4 cut(s)	23, 135, 284, 562
BssNI	GRCGYC	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	553, 618
Bst4CI	ACNGT	2 cut(s)	385, 786
Bst6I	CTCTTC	1 cut(s)	304
BstACI	GRCGYC	1 cut(s)	165
BstAPI	GCANNNNNTGC	1 cut(s)	538
BstBI	TTCGAA	2 cut(s)	173, 518
BstDEI	CTNAG	1 cut(s)	630
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	2 cut(s)	35, 234
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	4 cut(s)	26, 138, 287, 565
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	4 cut(s)	23, 135, 284, 562
BstMWI	GCNNNNNNNGC	5 cut(s)	138, 341, 410, 538, 685
BstNI	CCWGG	2 cut(s)	553, 618
BstNSI	RCATGY	2 cut(s)	151, 598
BstSCI	CCNGG	2 cut(s)	551, 616
BstV1I	GCAGC	1 cut(s)	666
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
BsuRI	GGCC	5 cut(s)	132, 141, 380, 419, 551
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	35, 234
BveI	ACCTGC	1 cut(s)	738
CfoI	GCGC	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	361
Cfr13I	GGNCC	2 cut(s)	130, 378
CseI	GACGC	2 cut(s)	173, 538
Csp6I	GTAC	1 cut(s)	601
CviAII	CATG	2 cut(s)	148, 595
CviQI	GTAC	1 cut(s)	601
DdeI	CTNAG	1 cut(s)	630
DpnI	GATC	4 cut(s)	25, 137, 286, 564
DpnII	GATC	4 cut(s)	23, 135, 284, 562
DriI	GACNNNNNGTC	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	304
Eam1105I	GACNNNNNGTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	304
Eco31I	GGTCTC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	668
EcoRI	GAATTC	1 cut(s)	268
EcoRII	CCWGG	2 cut(s)	551, 616
FaeI	CATG	2 cut(s)	151, 598
FaiI	YATR	7 cut(s)	149, 440, 596, 743, 745, 753, 768
FatI	CATG	2 cut(s)	147, 594
FauNDI	CATATG	1 cut(s)	743
Fnu4HI	GCNGC	4 cut(s)	11, 14, 32, 680
FokI	GGATG	2 cut(s)	22, 241
Fsp4HI	GCNGC	4 cut(s)	11, 14, 32, 680
FspBI	CTAG	1 cut(s)	689
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	4 cut(s)	11, 14, 32, 680
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	5 cut(s)	132, 141, 380, 419, 551
HapII	CCGG	4 cut(s)	133, 243, 362, 423
HgaI	GACGC	2 cut(s)	173, 538
HhaI	GCGC	1 cut(s)	10
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	151, 598
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	4 cut(s)	100, 188, 237, 280
HpaII	CCGG	4 cut(s)	133, 243, 362, 423
HphI	GGTGA	1 cut(s)	538
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	5 cut(s)	69, 111, 163, 393, 512
Hpy188III	TCNNGA	3 cut(s)	21, 209, 319
Hpy8I	GTNNAC	1 cut(s)	310
Hpy99I	CGWCG	3 cut(s)	158, 167, 434
HpyAV	CCTTC	3 cut(s)	72, 127, 169
HpyCH4III	ACNGT	2 cut(s)	385, 786
HpyCH4V	TGCA	2 cut(s)	656, 747
HpyF10VI	GCNNNNNNNGC	5 cut(s)	138, 341, 410, 538, 685
HpyF3I	CTNAG	1 cut(s)	630
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	2 cut(s)	151, 598
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	4 cut(s)	23, 135, 284, 562
LmnI	GCTCC	2 cut(s)	164, 431
Lsp1109I	GCAGC	1 cut(s)	666
MaeI	CTAG	1 cut(s)	689
MaeIII	GTNAC	2 cut(s)	526, 714
MalI	GATC	4 cut(s)	25, 137, 286, 564
MboI	GATC	4 cut(s)	23, 135, 284, 562
MboII	GAAGA	6 cut(s)	291, 334, 450, 715, 721, 730
MflI	RGATCY	1 cut(s)	562
MhlI	GDGCHC	2 cut(s)	337, 543
MluCI	AATT	3 cut(s)	268, 289, 657
MlyI	GAGTC	3 cut(s)	94, 197, 231
MmeI	TCCRAC	3 cut(s)	92, 186, 490
MnlI	CCTC	8 cut(s)	37, 51, 61, 339, 427, 430, 495, 574
MseI	TTAA	3 cut(s)	86, 408, 734
MspI	CCGG	4 cut(s)	133, 243, 362, 423
MspR9I	CCNGG	2 cut(s)	553, 618
MvaI	CCWGG	2 cut(s)	553, 618
MwoI	GCNNNNNNNGC	5 cut(s)	138, 341, 410, 538, 685
NdeI	CATATG	1 cut(s)	743
NdeII	GATC	4 cut(s)	23, 135, 284, 562
NlaIII	CATG	2 cut(s)	151, 598
NlaIV	GGNNCC	4 cut(s)	131, 160, 427, 564
NmeAIII	GCCGAG	1 cut(s)	523
NmuCI	GTSAC	1 cut(s)	526
NspI	RCATGY	2 cut(s)	151, 598
NspV	TTCGAA	2 cut(s)	173, 518
PciI	ACATGT	1 cut(s)	594
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 389
PfeI	GAWTC	1 cut(s)	280
PflFI	GACNNNGTC	1 cut(s)	314
PkrI	GCNGC	4 cut(s)	12, 15, 33, 681
PleI	GAGTC	3 cut(s)	94, 196, 231
PpsI	GAGTC	3 cut(s)	94, 196, 231
PscI	ACATGT	1 cut(s)	594
Psp6I	CCWGG	2 cut(s)	551, 616
PspGI	CCWGG	2 cut(s)	551, 616
PspN4I	GGNNCC	4 cut(s)	131, 160, 427, 564
PspPI	GGNCC	2 cut(s)	130, 378
PsuI	RGATCY	1 cut(s)	562
PsyI	GACNNNGTC	1 cut(s)	314
RsaI	GTAC	1 cut(s)	602
RsaNI	GTAC	1 cut(s)	601
SaqAI	TTAA	3 cut(s)	86, 408, 734
SatI	GCNGC	4 cut(s)	11, 14, 32, 680
Sau3AI	GATC	4 cut(s)	23, 135, 284, 562
Sau96I	GGNCC	2 cut(s)	130, 378
SchI	GAGTC	3 cut(s)	94, 197, 231
ScrFI	CCNGG	2 cut(s)	553, 618
SduI	GDGCHC	2 cut(s)	337, 543
SfiI	GGCCNNNNNGGCC	1 cut(s)	138
SfuI	TTCGAA	2 cut(s)	173, 518
SmlI	CTYRAG	1 cut(s)	760
SmoI	CTYRAG	1 cut(s)	760
Sse9I	AATT	3 cut(s)	268, 289, 657
SsiI	CCGC	4 cut(s)	11, 14, 32, 328
SspMI	CTAG	1 cut(s)	689
StyD4I	CCNGG	2 cut(s)	551, 616
TaaI	ACNGT	2 cut(s)	385, 786
TasI	AATT	3 cut(s)	268, 289, 657
TatI	WGTACW	1 cut(s)	600
TauI	GCSGC	3 cut(s)	13, 16, 34
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	3 cut(s)	86, 408, 734
Tru9I	TTAA	3 cut(s)	86, 408, 734
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	1 cut(s)	679
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	2 cut(s)	715, 730
TspGWI	ACGGA	1 cut(s)	418
Tth111I	GACNNNGTC	1 cut(s)	314
XapI	RAATTY	1 cut(s)	268
XceI	RCATGY	2 cut(s)	151, 598
XspI	CTAG	1 cut(s)	689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.