Rmu_sc0006247.1_g000001

ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006247.1
Physical Location & Seq
Forward (+)
1 .. 455
455 bp
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UTR
Exon/CDS
Intron
Rmu_sc0006247.1_g000001.1.cds

Sequence Viewer

Length: 260 bp
agaagcctgtcaagaaggatttagcaatgacaggggaagtaacactaactggcaggatccttccaattggcggggttaaggagaagacaatagcagcgagacggagtggagtgaagaccatcatattccctgaagccaacaggaaggattttgatgagcttgcccctaatgtaaaagaaggtcttgatgttcactttgtagatgactacaatcagatattcgctttggctttcagtgatgaccataatcaagaaaaataa

Protein Analysis

85

Amino Acids

9.47

Weight (kDa)

6.12

Isoelectric Point (pI)

31.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0023802)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07190
rosa_multiflora Rmu_sc0006247.1_g000001 Rmu_sc0008561.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 71
AclWI GGATC 2 cut(s) 51, 64
AcuI CTGAAG 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 70
AluBI AGCT 1 cut(s) 159
AluI AGCT 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 2 cut(s) 51, 64
ApeKI GCWGC 1 cut(s) 94
BamHI GGATCC 1 cut(s) 56
BbsI GAAGAC 2 cut(s) 91, 121
BbvI GCAGC 1 cut(s) 106
BccI CCATC 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 93
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 58
BpiI GAAGAC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 54
Bse3DI GCAATG 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMI GCAATG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 54
BseXI GCAGC 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 93
BsmBI CGTCTC 1 cut(s) 93
Bsp143I GATC 1 cut(s) 56
BspACI CCGC 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 58
BspPI GGATC 2 cut(s) 51, 64
BsrDI GCAATG 1 cut(s) 32
BsrI ACTGG 1 cut(s) 54
BssMI GATC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 161
BstKTI GATC 1 cut(s) 59
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 106
BstV2I GAAGAC 2 cut(s) 91, 121
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 161
CviJI RGCY 4 cut(s) 6, 136, 159, 229
CviKI_1 RGCY 4 cut(s) 6, 136, 159, 229
DpnI GATC 1 cut(s) 58
DpnII GATC 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 152
Esp3I CGTCTC 1 cut(s) 93
FaiI YATR 2 cut(s) 124, 245
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FauI CCCGC 1 cut(s) 64
Fnu4HI GCNGC 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 95
GluI GCNGC 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 1 cut(s) 215
Hpy188III TCNNGA 3 cut(s) 12, 184, 250
Hpy8I GTNNAC 1 cut(s) 192
HpyAV CCTTC 4 cut(s) 9, 70, 138, 172
Kzo9I GATC 1 cut(s) 56
LpnPI CCDG 6 cut(s) 17, 20, 35, 39, 126, 143
Lsp1109I GCAGC 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 39
MalI GATC 1 cut(s) 58
MboI GATC 1 cut(s) 56
MboII GAAGA 2 cut(s) 96, 126
MfeI CAATTG 1 cut(s) 65
MflI RGATCY 1 cut(s) 56
MluCI AATT 1 cut(s) 65
MseI TTAA 1 cut(s) 77
MunI CAATTG 1 cut(s) 65
NdeII GATC 1 cut(s) 56
NlaIV GGNNCC 1 cut(s) 58
PkrI GCNGC 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 58
PsuI RGATCY 1 cut(s) 56
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 1 cut(s) 56
SetI ASST 2 cut(s) 161, 183
Sse9I AATT 1 cut(s) 65
SsiI CCGC 1 cut(s) 71
TasI AATT 1 cut(s) 65
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TscAI CASTG 1 cut(s) 240
TseI GCWGC 1 cut(s) 94
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.