Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006247.1

Orthogroup ID

OG0023802

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 455

Gene Structure 455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 260 bp

agaagcctgtcaagaaggatttagcaatgacaggggaagtaacactaactggcaggatccttccaattggcggggttaaggagaagacaatagcagcgagacggagtggagtgaagaccatcatattccctgaagccaacaggaaggattttgatgagcttgcccctaatgtaaaagaaggtcttgatgttcactttgtagatgactacaatcagatattcgctttggctttcagtgatgaccataatcaagaaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0070011 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA LON_substr_bdg Lon_C

Protein Analysis

85

Amino Acids

9.47

Weight (kDa)

6.12

Isoelectric Point (pI)

31.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lon_C	PF05362	1 - 77	1.8e-28	Lon protease (S16) C-terminal proteolytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07190
rosa_multiflora	Rmu_sc0006247.1_g000001 Rmu_sc0008561.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	2 cut(s)	51, 64
AcuI	CTGAAG	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	70
AluBI	AGCT	1 cut(s)	159
AluI	AGCT	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	2 cut(s)	51, 64
ApeKI	GCWGC	1 cut(s)	94
BamHI	GGATCC	1 cut(s)	56
BbsI	GAAGAC	2 cut(s)	91, 121
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	93
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	58
BpiI	GAAGAC	2 cut(s)	91, 121
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	54
Bse3DI	GCAATG	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMI	GCAATG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	1 cut(s)	93
BsmBI	CGTCTC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	56
BspACI	CCGC	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	58
BspPI	GGATC	2 cut(s)	51, 64
BsrDI	GCAATG	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	54
BssMI	GATC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	161
BstKTI	GATC	1 cut(s)	59
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	56
BstV1I	GCAGC	1 cut(s)	106
BstV2I	GAAGAC	2 cut(s)	91, 121
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	161
CviJI	RGCY	4 cut(s)	6, 136, 159, 229
CviKI_1	RGCY	4 cut(s)	6, 136, 159, 229
DpnI	GATC	1 cut(s)	58
DpnII	GATC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	152
Esp3I	CGTCTC	1 cut(s)	93
FaiI	YATR	2 cut(s)	124, 245
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FauI	CCCGC	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	95
GluI	GCNGC	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188I	TCNGA	1 cut(s)	215
Hpy188III	TCNNGA	3 cut(s)	12, 184, 250
Hpy8I	GTNNAC	1 cut(s)	192
HpyAV	CCTTC	4 cut(s)	9, 70, 138, 172
Kzo9I	GATC	1 cut(s)	56
LpnPI	CCDG	6 cut(s)	17, 20, 35, 39, 126, 143
Lsp1109I	GCAGC	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	39
MalI	GATC	1 cut(s)	58
MboI	GATC	1 cut(s)	56
MboII	GAAGA	2 cut(s)	96, 126
MfeI	CAATTG	1 cut(s)	65
MflI	RGATCY	1 cut(s)	56
MluCI	AATT	1 cut(s)	65
MseI	TTAA	1 cut(s)	77
MunI	CAATTG	1 cut(s)	65
NdeII	GATC	1 cut(s)	56
NlaIV	GGNNCC	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	1 cut(s)	56
SetI	ASST	2 cut(s)	161, 183
Sse9I	AATT	1 cut(s)	65
SsiI	CCGC	1 cut(s)	71
TasI	AATT	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TscAI	CASTG	1 cut(s)	240
TseI	GCWGC	1 cut(s)	94
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.