Rmu_sc0006269.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006269.1
OG0031368
Physical Location & Seq
Reverse (-)
4895 .. 5191
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006269.1_g000002.1.cds

Sequence Viewer

Length: 297 bp
atgatagaaaatggaaccattttcaacagtacaagtacgccaacatgcttcttggttgtgactattcgcttaaaggacaattggagatacttaatggagccaaacaagaataggttcgtggaggagtggggcgcagccagagaaaatctggagcacaacttccgctggactcgcagcaactttgccatcatcggaatctttggcattgctatcattgtcttagtctacaagggcatcgtccgagaattccatatgcaagatgaggaagcaagcagaccatacaagaagtttatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.65

Weight (kDa)

8.89

Isoelectric Point (pI)

22.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031368)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006269.1_g000002
rosa_samantha Rh6AG349600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 225
AciI CCGC 1 cut(s) 163
AcsI RAATTY 1 cut(s) 245
AfaI GTAC 2 cut(s) 31, 37
AgsI TTSAA 1 cut(s) 25
Alw21I GWGCWC 1 cut(s) 156
ApeKI GCWGC 2 cut(s) 134, 174
ApoI RAATTY 1 cut(s) 245
Asp700I GAANNNNTTC 1 cut(s) 113
AspLEI GCGC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 2 cut(s) 146, 186
BccI CCATC 1 cut(s) 194
BisI GCNGC 2 cut(s) 135, 175
BlsI GCNGC 2 cut(s) 136, 176
BmiI GGNNCC 2 cut(s) 16, 99
BmsI GCATC 1 cut(s) 243
BpmI CTGGAG 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 204
BseMI GCAATG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 2 cut(s) 146, 186
BsiHKAI GWGCWC 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 156
BspACI CCGC 1 cut(s) 163
BspLI GGNNCC 2 cut(s) 16, 99
BsrDI GCAATG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 1 cut(s) 220
BstHHI GCGC 1 cut(s) 134
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstNSI RCATGY 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 146, 186
Cac8I GCNNGC 1 cut(s) 271
CfoI GCGC 1 cut(s) 134
Csp6I GTAC 2 cut(s) 30, 36
CviAII CATG 1 cut(s) 45
CviJI RGCY 2 cut(s) 100, 137
CviKI_1 RGCY 2 cut(s) 100, 137
CviQI GTAC 2 cut(s) 30, 36
DdeI CTNAG 1 cut(s) 220
EcoRI GAATTC 1 cut(s) 245
FaeI CATG 1 cut(s) 48
FaiI YATR 5 cut(s) 46, 252, 254, 280, 293
FatI CATG 1 cut(s) 44
FauNDI CATATG 1 cut(s) 252
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 135, 175
Fsp4HI GCNGC 2 cut(s) 135, 175
GlaI GCGC 1 cut(s) 133
GluI GCNGC 2 cut(s) 135, 175
GsuI CTGGAG 1 cut(s) 170
HhaI GCGC 1 cut(s) 134
Hin1II CATG 1 cut(s) 48
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HinfI GANTC 2 cut(s) 169, 195
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 194, 242
Hpy188III TCNNGA 1 cut(s) 149
Hpy8I GTNNAC 1 cut(s) 226
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
HpyF3I CTNAG 1 cut(s) 220
Hsp92II CATG 1 cut(s) 48
HspAI GCGC 1 cut(s) 132
LmnI GCTCC 2 cut(s) 97, 151
LpnPI CCDG 3 cut(s) 134, 151, 151
Lsp1109I GCAGC 2 cut(s) 146, 186
LweI GCATC 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 58
MfeI CAATTG 1 cut(s) 79
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 2 cut(s) 79, 245
MlyI GAGTC 1 cut(s) 163
MnlI CCTC 2 cut(s) 115, 256
MroXI GAANNNNTTC 1 cut(s) 113
MseI TTAA 2 cut(s) 71, 92
MspA1I CMGCKG 1 cut(s) 165
MunI CAATTG 1 cut(s) 79
MwoI GCNNNNNNNGC 1 cut(s) 171
NdeI CATATG 1 cut(s) 252
NlaIII CATG 1 cut(s) 48
NlaIV GGNNCC 2 cut(s) 16, 99
NmuCI GTSAC 1 cut(s) 58
NspI RCATGY 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 113
PfeI GAWTC 1 cut(s) 195
PkrI GCNGC 2 cut(s) 136, 176
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PspN4I GGNNCC 2 cut(s) 16, 99
RsaI GTAC 2 cut(s) 31, 37
RsaNI GTAC 2 cut(s) 30, 36
SaqAI TTAA 2 cut(s) 71, 92
SatI GCNGC 2 cut(s) 135, 175
SchI GAGTC 1 cut(s) 163
SduI GDGCHC 1 cut(s) 156
SetI ASST 1 cut(s) 116
SfaNI GCATC 1 cut(s) 243
Sse9I AATT 2 cut(s) 79, 245
SsiI CCGC 1 cut(s) 163
TaaI ACNGT 1 cut(s) 29
TasI AATT 2 cut(s) 79, 245
TatI WGTACW 1 cut(s) 29
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 2 cut(s) 71, 92
Tru9I TTAA 2 cut(s) 71, 92
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 2 cut(s) 134, 174
Tsp45I GTSAC 1 cut(s) 58
XapI RAATTY 1 cut(s) 245
XceI RCATGY 1 cut(s) 48
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XmiI GTMKAC 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.