Rmu_sc0006567.1_g000012

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006567.1
OG0031353
Physical Location & Seq
Forward (+)
49267 .. 50307
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 645 bp
atgcgaagatcagtctttaatctcatcatggagagcctttgcaaccacgaccggttctggcaccaaaaacccgattgctctggcaaaatgggactcctaccccaacaaaaaatgacaggtgccttacgtatgctttcatatggtgcagctgccgatcaatttatcgaaataacgaggatgggcgaatccaccacattggaatgtttgaagaagttctttcaacaagttgaagctctttcctcagaaactccgggagctcaaaatgacatcaacgtgctcggacattctaaagtgttccaacgtgtcatctctagaagtgctcattcagtgacgttcaaggccaacgacataacattttccaacccatactacctagttgatggaatttaccctcggtgcatcatgatatcttgtataattcttcacaacatgattgtggaggatgagtttgttgaagatgacttcatagagcctaacgcaactgacaacatgaacccggaaggggcaaacgtctatgatcgtcccttggaccgtgaaggacgtcctattcctttccagccagttgaaagagatggacaaaatcttccacagctcattgaccgtgtggagcaccttcattcggcctatctccacaagactctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

214

Amino Acids

24.48

Weight (kDa)

5.59

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_tran PF04827 82 - 132 1.5e-10 Plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031353)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005745.1_g000041 Rmu_sc0006567.1_g000012

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 544
AccB1I GGYRCC 2 cut(s) 60, 119
AcsI RAATTY 1 cut(s) 384
AcyI GRCGYC 1 cut(s) 541
AfiI CCNNNNNNNGG 2 cut(s) 502, 619
AflIII ACRYGT 1 cut(s) 301
AgeI ACCGGT 1 cut(s) 51
AgsI TTSAA 6 cut(s) 208, 221, 230, 337, 455, 566
AluBI AGCT 4 cut(s) 149, 233, 257, 592
AluI AGCT 4 cut(s) 149, 233, 257, 592
Alw21I GWGCWC 4 cut(s) 259, 279, 322, 612
AoxI GGCC 2 cut(s) 339, 621
ApeKI GCWGC 2 cut(s) 146, 149
ApoI RAATTY 1 cut(s) 384
AsiGI ACCGGT 1 cut(s) 51
Asp700I GAANNNNTTC 1 cut(s) 212
AspS9I GGNCC 1 cut(s) 529
AsuC2I CCSGG 2 cut(s) 252, 497
AvaII GGWCC 1 cut(s) 529
BanI GGYRCC 2 cut(s) 60, 119
BanII GRGCYC 1 cut(s) 259
Bbv12I GWGCWC 4 cut(s) 259, 279, 322, 612
BbvI GCAGC 2 cut(s) 136, 158
BccI CCATC 3 cut(s) 172, 374, 566
BcnI CCSGG 2 cut(s) 252, 497
BfaI CTAG 2 cut(s) 312, 374
BisI GCNGC 2 cut(s) 147, 150
BlsI GCNGC 2 cut(s) 148, 151
Bme1390I CCNGG 2 cut(s) 252, 497
Bme18I GGWCC 1 cut(s) 529
BmgT120I GGNCC 1 cut(s) 529
BmiI GGNNCC 2 cut(s) 62, 121
BmrFI CCNGG 2 cut(s) 252, 497
BmsI GCATC 1 cut(s) 408
BpuMI CCSGG 2 cut(s) 252, 497
BsaAI YACGTR 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 541
BsaJI CCNNGG 2 cut(s) 392, 525
BsaWI WCCGGW 1 cut(s) 51
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 2 cut(s) 502, 619
Bse118I RCCGGY 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 560
BseDI CCNNGG 2 cut(s) 392, 525
BseGI GGATG 2 cut(s) 183, 448
BseLI CCNNNNNNNGG 2 cut(s) 502, 619
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 560
BseXI GCAGC 2 cut(s) 136, 158
BsgI GTGCAG 1 cut(s) 165
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 2 cut(s) 341, 623
BshNI GGYRCC 2 cut(s) 60, 119
BshTI ACCGGT 1 cut(s) 51
BsiEI CGRYCG 1 cut(s) 52
BsiHKAI GWGCWC 4 cut(s) 259, 279, 322, 612
BsiSI CCGG 3 cut(s) 52, 251, 497
BslFI GGGAC 2 cut(s) 105, 507
BslI CCNNNNNNNGG 2 cut(s) 502, 619
BsmFI GGGAC 2 cut(s) 105, 507
BsnI GGCC 2 cut(s) 341, 623
Bsp1286I GDGCHC 4 cut(s) 259, 279, 322, 612
Bsp143I GATC 3 cut(s) 8, 154, 517
BspANI GGCC 2 cut(s) 341, 623
BspCNI CTCAG 1 cut(s) 254
BspHI TCATGA 1 cut(s) 402
BspLI GGNNCC 2 cut(s) 62, 121
BspT107I GGYRCC 2 cut(s) 60, 119
BsrFI RCCGGY 1 cut(s) 51
BsrI ACTGG 1 cut(s) 560
BssAI RCCGGY 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 392, 525
BssMI GATC 3 cut(s) 8, 154, 517
BssNI GRCGYC 1 cut(s) 541
BssT1I CCWWGG 1 cut(s) 525
Bst4CI ACNGT 2 cut(s) 533, 602
BstACI GRCGYC 1 cut(s) 541
BstBAI YACGTR 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 241
BstF5I GGATG 2 cut(s) 183, 448
BstKTI GATC 3 cut(s) 11, 157, 520
BstMBI GATC 3 cut(s) 8, 154, 517
BstMCI CGRYCG 1 cut(s) 52
BstSCI CCNGG 2 cut(s) 250, 495
BstSNI TACGTA 1 cut(s) 128
BstV1I GCAGC 2 cut(s) 136, 158
BstXI CCANNNNNNTGG 1 cut(s) 196
BsuRI GGCC 2 cut(s) 341, 623
BtsCI GGATG 2 cut(s) 183, 448
BtsIMutI CAGTG 1 cut(s) 333
CciI TCATGA 1 cut(s) 402
Cfr10I RCCGGY 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 529
CspAI ACCGGT 1 cut(s) 51
CviAII CATG 4 cut(s) 28, 403, 430, 490
CviJI RGCY 9 cut(s) 36, 149, 233, 257, 341, 472, 559, 592, 623
CviKI_1 RGCY 9 cut(s) 36, 149, 233, 257, 341, 472, 559, 592, 623
DdeI CTNAG 1 cut(s) 241
DpnI GATC 3 cut(s) 10, 156, 519
DpnII GATC 3 cut(s) 8, 154, 517
Ecl136II GAGCTC 1 cut(s) 257
Eco105I TACGTA 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 525
Eco24I GRGCYC 1 cut(s) 259
Eco32I GATATC 1 cut(s) 408
Eco47I GGWCC 1 cut(s) 529
Eco53kI GAGCTC 1 cut(s) 257
EcoICRI GAGCTC 1 cut(s) 257
EcoRV GATATC 1 cut(s) 408
EcoT14I CCWWGG 1 cut(s) 525
EcoT38I GRGCYC 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 525
FaeI CATG 4 cut(s) 31, 406, 433, 493
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FaqI GGGAC 2 cut(s) 105, 507
FatI CATG 4 cut(s) 27, 402, 429, 489
FauNDI CATATG 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 147, 150
FokI GGATG 2 cut(s) 190, 455
FriOI GRGCYC 1 cut(s) 259
Fsp4HI GCNGC 2 cut(s) 147, 150
FspBI CTAG 2 cut(s) 312, 374
GluI GCNGC 2 cut(s) 147, 150
HaeIII GGCC 2 cut(s) 341, 623
HapII CCGG 3 cut(s) 52, 251, 497
Hin1I GRCGYC 1 cut(s) 541
Hin1II CATG 4 cut(s) 31, 406, 433, 493
HinfI GANTC 3 cut(s) 93, 185, 637
HpaII CCGG 3 cut(s) 52, 251, 497
Hpy188I TCNGA 2 cut(s) 244, 281
Hpy188III TCNNGA 2 cut(s) 312, 403
HpyAV CCTTC 3 cut(s) 494, 530, 623
HpyCH4III ACNGT 2 cut(s) 533, 602
HpyCH4IV ACGT 6 cut(s) 127, 273, 301, 332, 510, 541
HpyCH4V TGCA 3 cut(s) 42, 146, 399
HpyF3I CTNAG 1 cut(s) 241
HpySE526I ACGT 6 cut(s) 127, 273, 301, 332, 510, 541
Hsp92I GRCGYC 1 cut(s) 541
Hsp92II CATG 4 cut(s) 31, 406, 433, 493
Kzo9I GATC 3 cut(s) 8, 154, 517
LmnI GCTCC 2 cut(s) 254, 607
LpnPI CCDG 8 cut(s) 43, 65, 66, 102, 264, 510, 569, 573
Lsp1109I GCAGC 2 cut(s) 136, 158
LweI GCATC 1 cut(s) 408
MaeI CTAG 2 cut(s) 312, 374
MaeII ACGT 6 cut(s) 127, 273, 301, 332, 510, 541
MaeIII GTNAC 1 cut(s) 328
MalI GATC 3 cut(s) 10, 156, 519
MboI GATC 3 cut(s) 8, 154, 517
MboII GAAGA 5 cut(s) 18, 220, 413, 467, 575
MhlI GDGCHC 4 cut(s) 259, 279, 322, 612
MluCI AATT 3 cut(s) 158, 384, 417
MlyI GAGTC 2 cut(s) 87, 631
MmeI TCCRAC 2 cut(s) 322, 384
MnlI CCTC 4 cut(s) 168, 250, 402, 433
MroXI GAANNNNTTC 1 cut(s) 212
MseI TTAA 2 cut(s) 18, 643
MslI CAYNNNNRTG 3 cut(s) 199, 272, 434
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 3 cut(s) 52, 251, 497
MspR9I CCNGG 2 cut(s) 252, 497
NciI CCSGG 2 cut(s) 252, 497
NdeI CATATG 1 cut(s) 139
NdeII GATC 3 cut(s) 8, 154, 517
NlaIII CATG 4 cut(s) 31, 406, 433, 493
NlaIV GGNNCC 2 cut(s) 62, 121
NmuCI GTSAC 1 cut(s) 328
PagI TCATGA 1 cut(s) 402
PdmI GAANNNNTTC 1 cut(s) 212
PfeI GAWTC 1 cut(s) 185
PfoI TCCNGGA 1 cut(s) 250
PinAI ACCGGT 1 cut(s) 51
PkrI GCNGC 2 cut(s) 148, 151
PleI GAGTC 2 cut(s) 87, 631
PpsI GAGTC 2 cut(s) 87, 631
Ppu21I YACGTR 1 cut(s) 128
Psp124BI GAGCTC 1 cut(s) 259
PspN4I GGNNCC 2 cut(s) 62, 121
PspPI GGNCC 1 cut(s) 529
PvuII CAGCTG 1 cut(s) 149
RseI CAYNNNNRTG 3 cut(s) 199, 272, 434
SacI GAGCTC 1 cut(s) 259
SaqAI TTAA 2 cut(s) 18, 643
SatI GCNGC 2 cut(s) 147, 150
Sau3AI GATC 3 cut(s) 8, 154, 517
Sau96I GGNCC 1 cut(s) 529
SchI GAGTC 2 cut(s) 87, 631
ScrFI CCNGG 2 cut(s) 252, 497
SduI GDGCHC 4 cut(s) 259, 279, 322, 612
SfaNI GCATC 1 cut(s) 408
SinI GGWCC 1 cut(s) 529
SmiMI CAYNNNNRTG 3 cut(s) 199, 272, 434
SnaBI TACGTA 1 cut(s) 128
Sse9I AATT 3 cut(s) 158, 384, 417
SspMI CTAG 2 cut(s) 312, 374
SstI GAGCTC 1 cut(s) 259
StyD4I CCNGG 2 cut(s) 250, 495
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 2 cut(s) 533, 602
TaiI ACGT 6 cut(s) 130, 276, 304, 335, 513, 544
TaqI TCGA 1 cut(s) 165
TasI AATT 3 cut(s) 158, 384, 417
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 2 cut(s) 18, 643
Tru9I TTAA 2 cut(s) 18, 643
TscAI CASTG 1 cut(s) 333
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 2 cut(s) 146, 149
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 4 cut(s) 126, 454, 506, 605
TspRI CASTG 1 cut(s) 333
VpaK11BI GGWCC 1 cut(s) 529
XapI RAATTY 1 cut(s) 384
XbaI TCTAGA 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 212
XspI CTAG 2 cut(s) 312, 374
ZraI GACGTC 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.