Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006782.1

Orthogroup ID

OG0031378

Physical Location & Seq

Genomic Coordinates Reverse (-)

57983 .. 60902

Gene Structure 2920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgaagaggatcccacgcgtctcgagctacaggcgcaagagccgcaaggcccactttacggcggcgtcgagcttccgcctagtcttgatgagtgcgccgctctcctccgaccttctgtcgaagtacaacgtccagtccatgccggttctcaaggatgacgaggtccaggtcgtgcgtgggacctacaaggttaacatcggaatcaacctctccaaggttctcatcaccaagctcaggctcaacaaggaccgcaagtcgttgctggaccgcaaggtcaagggcagagccgatgccaataaggacaaaggcaccaagttgatggtggaacatcatgcagaacatggattgatgaatgagaggcctctcttgattttggaccgggttatttttctagccaccaccttctgcgcctcacttcacgaagaaaacagagagcacgtagctgtgaatcttgtgatcatggacggtaatgtgaggttgggtcatgaagcatgtgggtgggctcaaagagatcttgttgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L26

Protein Analysis

174

Amino Acids

19.78

Weight (kDa)

10.0

Isoelectric Point (pI)

29.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L26	PF16906	8 - 91	1.7e-23	Ribosomal proteins L26 eukaryotic, L24P archaeal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031378)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006782.1_g000013
rosa_wichuraiana	Rw6G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	308
AccBSI	CCGCTC	1 cut(s)	100
AccII	CGCG	1 cut(s)	18
AciI	CCGC	6 cut(s)	43, 62, 76, 98, 250, 268
AclWI	GGATC	2 cut(s)	4, 17
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	3 cut(s)	58, 214, 234
AflIII	ACRYGT	1 cut(s)	16
AhdI	GACNNNNNGTC	2 cut(s)	115, 253
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	4 cut(s)	27, 72, 232, 443
AluI	AGCT	4 cut(s)	27, 72, 232, 443
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	2 cut(s)	4, 17
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	2 cut(s)	48, 359
AspLEI	GCGC	3 cut(s)	36, 97, 410
AspS9I	GGNCC	6 cut(s)	49, 163, 180, 247, 265, 376
AsuC2I	CCSGG	1 cut(s)	380
AsuHPI	GGTGA	1 cut(s)	217
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	5 cut(s)	163, 180, 247, 265, 376
BamHI	GGATCC	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	505
Bbv12I	GWGCWC	1 cut(s)	438
BccI	CCATC	1 cut(s)	313
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	167
BclI	TGATCA	1 cut(s)	456
BcnI	CCSGG	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	2 cut(s)	80, 392
BfmI	CTRYAG	1 cut(s)	28
BglII	AGATCT	1 cut(s)	511
BisI	GCNGC	3 cut(s)	43, 63, 98
BlsI	GCNGC	3 cut(s)	44, 64, 99
Bme1390I	CCNGG	2 cut(s)	167, 380
Bme18I	GGWCC	5 cut(s)	163, 180, 247, 265, 376
BmeRI	GACNNNNNGTC	2 cut(s)	115, 253
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	6 cut(s)	49, 163, 180, 247, 265, 376
BmiI	GGNNCC	3 cut(s)	11, 181, 310
BmrFI	CCNGG	2 cut(s)	167, 380
BmsI	GCATC	1 cut(s)	280
Bpu10I	CCTNAGC	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	380
BsaAI	YACGTR	1 cut(s)	439
BsaHI	GRCGYC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 214, 234
Bse118I	RCCGGY	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	3 cut(s)	58, 214, 234
BseMII	CTCAG	1 cut(s)	247
BseNI	ACTGG	1 cut(s)	133
BseRI	GAGGAG	1 cut(s)	94
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	2 cut(s)	50, 361
BshNI	GGYRCC	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	438
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	2 cut(s)	143, 379
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	3 cut(s)	58, 214, 234
BsmAI	GTCTC	1 cut(s)	25
BsmBI	CGTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	2 cut(s)	50, 361
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	438, 505
Bsp143I	GATC	3 cut(s)	9, 456, 511
BspACI	CCGC	6 cut(s)	43, 62, 76, 98, 250, 268
BspANI	GGCC	2 cut(s)	50, 361
BspCNI	CTCAG	1 cut(s)	246
BspFNI	CGCG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	484
BspLI	GGNNCC	3 cut(s)	11, 181, 310
BspPI	GGATC	2 cut(s)	4, 17
BspT107I	GGYRCC	1 cut(s)	308
BsrBI	CCGCTC	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	3 cut(s)	9, 456, 511
BssNI	GRCGYC	1 cut(s)	65
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	467
BstACI	GRCGYC	1 cut(s)	65
BstBAI	YACGTR	1 cut(s)	439
BstDEI	CTNAG	1 cut(s)	233
BstENI	CCTNNNNNAGG	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	160
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	3 cut(s)	36, 97, 410
BstKTI	GATC	3 cut(s)	12, 459, 514
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	3 cut(s)	9, 456, 511
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 33, 42
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	495
BstSCI	CCNGG	2 cut(s)	165, 378
BstSFI	CTRYAG	1 cut(s)	28
BstUI	CGCG	1 cut(s)	18
BstX2I	RGATCY	2 cut(s)	9, 511
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstYI	RGATCY	2 cut(s)	9, 511
BsuRI	GGCC	2 cut(s)	50, 361
BtsCI	GGATG	1 cut(s)	160
CciI	TCATGA	1 cut(s)	484
CfoI	GCGC	3 cut(s)	36, 97, 410
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	6 cut(s)	49, 163, 180, 247, 265, 376
CseI	GACGC	2 cut(s)	7, 54
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	6 cut(s)	139, 332, 341, 460, 485, 492
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	3 cut(s)	11, 458, 513
DpnII	GATC	3 cut(s)	9, 456, 511
DrdI	GACNNNNNNGTC	1 cut(s)	272
DriI	GACNNNNNGTC	2 cut(s)	115, 253
DseDI	GACNNNNNNGTC	1 cut(s)	272
Eam1105I	GACNNNNNGTC	2 cut(s)	115, 253
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	213
Eco147I	AGGCCT	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	505
Eco47I	GGWCC	5 cut(s)	163, 180, 247, 265, 376
Eco88I	CYCGRG	1 cut(s)	22
EcoNI	CCTNNNNNAGG	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	6 cut(s)	142, 335, 344, 463, 488, 495
FaiI	YATR	6 cut(s)	140, 333, 342, 461, 486, 493
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	6 cut(s)	138, 331, 340, 459, 484, 491
FbaI	TGATCA	1 cut(s)	456
Fnu4HI	GCNGC	3 cut(s)	43, 63, 98
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	505
Fsp4HI	GCNGC	3 cut(s)	43, 63, 98
FspBI	CTAG	2 cut(s)	80, 392
GlaI	GCGC	3 cut(s)	35, 96, 409
GluI	GCNGC	3 cut(s)	43, 63, 98
HaeIII	GGCC	2 cut(s)	50, 361
HapII	CCGG	2 cut(s)	143, 379
HgaI	GACGC	2 cut(s)	7, 54
HhaI	GCGC	3 cut(s)	36, 97, 410
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	6 cut(s)	142, 335, 344, 463, 488, 495
Hin6I	GCGC	3 cut(s)	34, 95, 408
HinP1I	GCGC	3 cut(s)	34, 95, 408
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	2 cut(s)	201, 448
HpaI	GTTAAC	1 cut(s)	193
HpaII	CCGG	2 cut(s)	143, 379
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	109, 200
Hpy188III	TCNNGA	5 cut(s)	22, 85, 367, 419, 485
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	2 cut(s)	122, 412
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4IV	ACGT	2 cut(s)	129, 438
HpyCH4V	TGCA	1 cut(s)	335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 33, 42
HpyF3I	CTNAG	1 cut(s)	233
HpySE526I	ACGT	2 cut(s)	129, 438
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	6 cut(s)	142, 335, 344, 463, 488, 495
HspAI	GCGC	3 cut(s)	34, 95, 408
Ksp22I	TGATCA	1 cut(s)	456
KspAI	GTTAAC	1 cut(s)	193
Kzo9I	GATC	3 cut(s)	9, 456, 511
LpnPI	CCDG	8 cut(s)	16, 146, 152, 156, 179, 220, 248, 392
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	2 cut(s)	80, 392
MaeII	ACGT	2 cut(s)	129, 438
MalI	GATC	3 cut(s)	11, 458, 513
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	3 cut(s)	9, 456, 511
MboII	GAAGA	2 cut(s)	16, 434
MflI	RGATCY	2 cut(s)	9, 511
MhlI	GDGCHC	2 cut(s)	438, 505
MluI	ACGCGT	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	7 cut(s)	115, 154, 218, 351, 372, 421, 468
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	496
MspI	CCGG	2 cut(s)	143, 379
MspR9I	CCNGG	2 cut(s)	167, 380
MvaI	CCWGG	1 cut(s)	167
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	3 cut(s)	24, 33, 42
NciI	CCSGG	1 cut(s)	380
NdeII	GATC	3 cut(s)	9, 456, 511
NlaIII	CATG	6 cut(s)	142, 335, 344, 463, 488, 495
NlaIV	GGNNCC	3 cut(s)	11, 181, 310
NspI	RCATGY	1 cut(s)	495
PaeR7I	CTCGAG	1 cut(s)	22
PagI	TCATGA	1 cut(s)	484
PceI	AGGCCT	1 cut(s)	361
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PfeI	GAWTC	2 cut(s)	201, 448
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	3 cut(s)	44, 64, 99
Ppu21I	YACGTR	1 cut(s)	439
PpuMI	RGGWCCY	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	3 cut(s)	11, 181, 310
PspPI	GGNCC	6 cut(s)	49, 163, 180, 247, 265, 376
PspPPI	RGGWCCY	1 cut(s)	180
PsuI	RGATCY	2 cut(s)	9, 511
PsyI	GACNNNGTC	1 cut(s)	161
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	496
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	3 cut(s)	43, 63, 98
Sau3AI	GATC	3 cut(s)	9, 456, 511
Sau96I	GGNCC	6 cut(s)	49, 163, 180, 247, 265, 376
ScrFI	CCNGG	2 cut(s)	167, 380
SduI	GDGCHC	2 cut(s)	438, 505
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	1 cut(s)	28
Sfr274I	CTCGAG	1 cut(s)	22
SinI	GGWCC	5 cut(s)	163, 180, 247, 265, 376
SlaI	CTCGAG	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	496
SmlI	CTYRAG	2 cut(s)	22, 149
SmoI	CTYRAG	2 cut(s)	22, 149
SseBI	AGGCCT	1 cut(s)	361
SsiI	CCGC	6 cut(s)	43, 62, 76, 98, 250, 268
SspMI	CTAG	2 cut(s)	80, 392
StuI	AGGCCT	1 cut(s)	361
StyD4I	CCNGG	2 cut(s)	165, 378
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	467
TaiI	ACGT	2 cut(s)	132, 441
TaqI	TCGA	3 cut(s)	23, 68, 119
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	3 cut(s)	45, 65, 100
TfiI	GAWTC	2 cut(s)	201, 448
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TspDTI	ATGAA	3 cut(s)	17, 365, 501
Tth111I	GACNNNGTC	1 cut(s)	161
VpaK11BI	GGWCC	5 cut(s)	163, 180, 247, 265, 376
XagI	CCTNNNNNAGG	1 cut(s)	212
XceI	RCATGY	1 cut(s)	495
XcmI	CCANNNNNNNNNTGG	2 cut(s)	173, 319
XhoI	CTCGAG	1 cut(s)	22
XspI	CTAG	2 cut(s)	80, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.