Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0031378

Physical Location & Seq

Genomic Coordinates Forward (+)

7679003 .. 7681427

Gene Structure 2425 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G004690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAAGAGGATCCCACGCGTCTCGAGCTACAGGCGCAAGAGCCGCAAGGCCAACTTTACGGCGGCGTCGAGCTTCCGCCTAGTCTTGATGAGCTACAACGTCCAGTCCATGCCGGTGCTCAAGGATGACGAGGTCCAGGTCGTGCGTGGGACCTACAAGGGTTGGGAGGGCAAGTGTAAAGGTTGCACATTATATTTGTCGCATTTTATGCTCCTATCAGTTAACATCGGAATCAACCCCTCCAAGGTTCTCATCACCAAGCTCAGGCTCGACAAGGACCGCAAGTCGTTGCTGGACCGCAAGGTCAAGGGCAGAGCCGATGCCGATAAGGACAAAGGCACCAAGTTGATGGCGGAACATCATGCAGAACATGGATTGATGAGTGAGAGGCCTCTCTTGATTTTGGTAGTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L26

Protein Analysis

138

Amino Acids

15.74

Weight (kDa)

10.2

Isoelectric Point (pI)

29.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L26	PF16906	8 - 101	3.3e-13	Ribosomal proteins L26 eukaryotic, L24P archaeal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031378)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006782.1_g000013
rosa_wichuraiana	Rw6G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	338
AccII	CGCG	1 cut(s)	18
AciI	CCGC	6 cut(s)	43, 62, 76, 280, 298, 353
AclWI	GGATC	2 cut(s)	4, 17
AcyI	GRCGYC	1 cut(s)	65
AfiI	CCNNNNNNNGG	2 cut(s)	244, 264
AflIII	ACRYGT	1 cut(s)	16
AhdI	GACNNNNNGTC	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	4 cut(s)	27, 72, 93, 262
AluI	AGCT	4 cut(s)	27, 72, 93, 262
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	2 cut(s)	4, 17
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	2 cut(s)	48, 389
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	4 cut(s)	133, 150, 277, 295
AsuHPI	GGTGA	1 cut(s)	247
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	4 cut(s)	133, 150, 277, 295
BamHI	GGATCC	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	120
BccI	CCATC	1 cut(s)	343
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	1 cut(s)	28
BisI	GCNGC	2 cut(s)	43, 63
BlsI	GCNGC	2 cut(s)	44, 64
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	4 cut(s)	133, 150, 277, 295
BmeRI	GACNNNNNGTC	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	4 cut(s)	133, 150, 277, 295
BmiI	GGNNCC	3 cut(s)	11, 151, 340
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	1 cut(s)	310
Bpu10I	CCTNAGC	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 264
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	2 cut(s)	244, 264
BseMII	CTCAG	1 cut(s)	277
BseNI	ACTGG	1 cut(s)	103
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	2 cut(s)	50, 391
BshNI	GGYRCC	1 cut(s)	338
BsiHKAI	GWGCWC	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	2 cut(s)	244, 264
BsmAI	GTCTC	1 cut(s)	25
BsmBI	CGTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	2 cut(s)	50, 391
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	6 cut(s)	43, 62, 76, 280, 298, 353
BspANI	GGCC	2 cut(s)	50, 391
BspCNI	CTCAG	1 cut(s)	276
BspFNI	CGCG	1 cut(s)	18
BspLI	GGNNCC	3 cut(s)	11, 151, 340
BspPI	GGATC	2 cut(s)	4, 17
BspT107I	GGYRCC	1 cut(s)	338
BsrFI	RCCGGY	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	103
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	1 cut(s)	9
BssNI	GRCGYC	1 cut(s)	65
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	137
BstACI	GRCGYC	1 cut(s)	65
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	263
BstF5I	GGATG	1 cut(s)	130
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 33, 42, 208
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	135
BstSFI	CTRYAG	1 cut(s)	28
BstUI	CGCG	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	9
BstXI	CCANNNNNNTGG	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	9
BsuRI	GGCC	2 cut(s)	50, 391
BtsCI	GGATG	1 cut(s)	130
CfoI	GCGC	1 cut(s)	36
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	4 cut(s)	133, 150, 277, 295
CseI	GACGC	2 cut(s)	7, 54
CviAII	CATG	3 cut(s)	109, 362, 371
CviJI	RGCY	9 cut(s)	27, 42, 50, 72, 93, 262, 268, 317, 391
CviKI_1	RGCY	9 cut(s)	27, 42, 50, 72, 93, 262, 268, 317, 391
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
DrdI	GACNNNNNNGTC	1 cut(s)	302
DriI	GACNNNNNGTC	1 cut(s)	283
DseDI	GACNNNNNNGTC	1 cut(s)	302
Eam1105I	GACNNNNNGTC	1 cut(s)	283
EciI	GGCGGA	2 cut(s)	65, 368
Eco130I	CCWWGG	1 cut(s)	243
Eco147I	AGGCCT	1 cut(s)	391
Eco47I	GGWCC	4 cut(s)	133, 150, 277, 295
Eco88I	CYCGRG	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	3 cut(s)	112, 365, 374
FaiI	YATR	5 cut(s)	110, 193, 209, 363, 372
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	3 cut(s)	108, 361, 370
Fnu4HI	GCNGC	2 cut(s)	43, 63
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	2 cut(s)	43, 63
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	2 cut(s)	43, 63
HaeIII	GGCC	2 cut(s)	50, 391
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	2 cut(s)	7, 54
HhaI	GCGC	1 cut(s)	36
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	3 cut(s)	112, 365, 374
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	1 cut(s)	231
HpaI	GTTAAC	1 cut(s)	223
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	230
Hpy188III	TCNNGA	3 cut(s)	22, 85, 397
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	2 cut(s)	186, 365
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 33, 42, 208
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	3 cut(s)	112, 365, 374
HspAI	GCGC	1 cut(s)	34
KspAI	GTTAAC	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	216
LpnPI	CCDG	7 cut(s)	16, 116, 122, 126, 149, 250, 278
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	99
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	1 cut(s)	16
MflI	RGATCY	1 cut(s)	9
MhlI	GDGCHC	1 cut(s)	120
MluI	ACGCGT	1 cut(s)	16
MnlI	CCTC	5 cut(s)	124, 160, 250, 381, 402
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	1 cut(s)	113
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	4 cut(s)	24, 33, 42, 208
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	3 cut(s)	112, 365, 374
NlaIV	GGNNCC	3 cut(s)	11, 151, 340
PaeR7I	CTCGAG	1 cut(s)	22
PceI	AGGCCT	1 cut(s)	391
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	231
PflFI	GACNNNGTC	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	44, 64
PpuMI	RGGWCCY	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	3 cut(s)	11, 151, 340
PspPI	GGNCC	4 cut(s)	133, 150, 277, 295
PspPPI	RGGWCCY	1 cut(s)	150
PsuI	RGATCY	1 cut(s)	9
PsyI	GACNNNGTC	1 cut(s)	131
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	2 cut(s)	43, 63
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	4 cut(s)	133, 150, 277, 295
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	120
SfaNI	GCATC	1 cut(s)	310
SfcI	CTRYAG	1 cut(s)	28
Sfr274I	CTCGAG	1 cut(s)	22
SinI	GGWCC	4 cut(s)	133, 150, 277, 295
SlaI	CTCGAG	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	22, 119
SmoI	CTYRAG	2 cut(s)	22, 119
SseBI	AGGCCT	1 cut(s)	391
SsiI	CCGC	6 cut(s)	43, 62, 76, 280, 298, 353
SspMI	CTAG	1 cut(s)	80
StuI	AGGCCT	1 cut(s)	391
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	243
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	3 cut(s)	23, 68, 270
TauI	GCSGC	2 cut(s)	45, 65
TfiI	GAWTC	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	131
VpaK11BI	GGWCC	4 cut(s)	133, 150, 277, 295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	143
XhoI	CTCGAG	1 cut(s)	22
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.