Rmu_sc0006833.1_g000004

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006833.1
OG0031379
Physical Location & Seq
Reverse (-)
21084 .. 21740
657 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 510 bp
atgtggaggttgtcggggaccgtggaagttcaaccatggggagaacgtttcctgtttacgttcacccatgaaagggttgttgttcgtgtgaagaagggaggctcgtggggttttcagcgagccatgcttctcctgaatgattatgatggcttctcggagatctctaccgtgaagatggaatttgtttggattctggttacgttggaaggcatacctccgggcattttgatagaacctactgtccggttggtgggaaagacaattggtgaggttgtggaggtgaatcgtatggcgctgcgtaggggagatgcctggcgttgtcctagggtggatgactcagagactgattctgtggtggagacaggagggcattcggcaacagggccgttcgttccagcccttgtccttagggccaacgttcatccttcaatttcttcttcactgctttctgccttcaaggttcccaatttgctgaagaagaaacctgtgcagatccgagagcttccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

169

Amino Acids

18.9

Weight (kDa)

9.25

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031379)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8155862.1_g000001 Rmu_sc0006833.1_g000004

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 2 cut(s) 46, 417
AclWI GGATC 1 cut(s) 487
AcsI RAATTY 1 cut(s) 179
AcuI CTGAAG 1 cut(s) 494
AfiI CCNNNNNNNGG 3 cut(s) 72, 73, 250
AgsI TTSAA 3 cut(s) 32, 429, 457
AjnI CCWGG 1 cut(s) 311
AloI GAACNNNNNNTCC 2 cut(s) 225, 257
AluBI AGCT 1 cut(s) 502
AluI AGCT 1 cut(s) 502
Alw26I GTCTC 2 cut(s) 335, 353
AlwI GGATC 1 cut(s) 487
AlwNI CAGNNNCTG 1 cut(s) 344
AoxI GGCC 2 cut(s) 383, 411
ApeKI GCWGC 1 cut(s) 295
ApoI RAATTY 1 cut(s) 179
AspA2I CCTAGG 1 cut(s) 323
AspLEI GCGC 1 cut(s) 295
AspS9I GGNCC 3 cut(s) 18, 383, 411
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 3 cut(s) 55, 278, 292
AvaII GGWCC 1 cut(s) 18
AvrII CCTAGG 1 cut(s) 323
AxyI CCTNAGG 1 cut(s) 407
BauI CACGAG 1 cut(s) 103
BbvI GCAGC 1 cut(s) 282
BccI CCATC 2 cut(s) 140, 169
BceAI ACGGC 1 cut(s) 370
BciT130I CCWGG 1 cut(s) 313
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 2 cut(s) 335, 353
BfaI CTAG 1 cut(s) 324
BfoI RGCGCY 1 cut(s) 296
BglII AGATCT 1 cut(s) 159
BisI GCNGC 1 cut(s) 296
BlnI CCTAGG 1 cut(s) 323
BlsI GCNGC 1 cut(s) 297
Bme1390I CCNGG 2 cut(s) 219, 313
Bme18I GGWCC 1 cut(s) 18
BmgT120I GGNCC 3 cut(s) 18, 383, 411
BmiI GGNNCC 2 cut(s) 19, 462
BmrFI CCNGG 2 cut(s) 219, 313
BmsI GCATC 1 cut(s) 298
BpuMI CCSGG 1 cut(s) 219
BsaJI CCNNGG 3 cut(s) 21, 35, 323
BsaWI WCCGGW 1 cut(s) 243
Bsc4I CCNNNNNNNGG 3 cut(s) 72, 73, 250
Bse21I CCTNAGG 1 cut(s) 407
BseBI CCWGG 1 cut(s) 313
BseDI CCNNGG 3 cut(s) 21, 35, 323
BseGI GGATG 2 cut(s) 337, 421
BseLI CCNNNNNNNGG 3 cut(s) 72, 73, 250
BseMII CTCAG 1 cut(s) 351
BseXI GCAGC 1 cut(s) 282
BsgI GTGCAG 1 cut(s) 509
BshFI GGCC 2 cut(s) 385, 413
BsiSI CCGG 2 cut(s) 218, 244
BslFI GGGAC 1 cut(s) 31
BslI CCNNNNNNNGG 3 cut(s) 72, 73, 250
BsmAI GTCTC 2 cut(s) 335, 353
BsmFI GGGAC 1 cut(s) 31
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 2 cut(s) 385, 413
Bsp143I GATC 2 cut(s) 159, 492
Bsp19I CCATGG 1 cut(s) 35
BspANI GGCC 2 cut(s) 385, 413
BspCNI CTCAG 1 cut(s) 350
BspLI GGNNCC 2 cut(s) 19, 462
BspPI GGATC 1 cut(s) 487
BssECI CCNNGG 3 cut(s) 21, 35, 323
BssMI GATC 2 cut(s) 159, 492
BssSI CACGAG 1 cut(s) 103
BssT1I CCWWGG 2 cut(s) 35, 323
Bst2BI CACGAG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 313
Bst4CI ACNGT 3 cut(s) 22, 169, 241
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 337, 407
BstDSI CCRYGG 2 cut(s) 21, 35
BstF5I GGATG 2 cut(s) 337, 421
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 2 cut(s) 162, 495
BstMAI GTCTC 2 cut(s) 335, 353
BstMBI GATC 2 cut(s) 159, 492
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstNI CCWGG 1 cut(s) 313
BstSCI CCNGG 2 cut(s) 217, 311
BstV1I GCAGC 1 cut(s) 282
BstX2I RGATCY 2 cut(s) 159, 492
BstYI RGATCY 2 cut(s) 159, 492
Bsu36I CCTNAGG 1 cut(s) 407
BsuRI GGCC 2 cut(s) 385, 413
BtgI CCRYGG 2 cut(s) 21, 35
BtsCI GGATG 2 cut(s) 337, 421
BtsI GCAGTG 1 cut(s) 440
BtsIMutI CAGTG 1 cut(s) 440
Cac8I GCNNGC 1 cut(s) 120
CaiI CAGNNNCTG 1 cut(s) 344
CfoI GCGC 1 cut(s) 295
Cfr13I GGNCC 3 cut(s) 18, 383, 411
CviAII CATG 3 cut(s) 36, 68, 124
CviJI RGCY 7 cut(s) 102, 122, 150, 385, 398, 413, 502
CviKI_1 RGCY 7 cut(s) 102, 122, 150, 385, 398, 413, 502
DdeI CTNAG 2 cut(s) 337, 407
DpnI GATC 2 cut(s) 161, 494
DpnII GATC 2 cut(s) 159, 492
Eco130I CCWWGG 2 cut(s) 35, 323
Eco47I GGWCC 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 494
Eco81I CCTNAGG 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 311
EcoT14I CCWWGG 2 cut(s) 35, 323
ErhI CCWWGG 2 cut(s) 35, 323
FaeI CATG 3 cut(s) 39, 71, 127
FaiI YATR 7 cut(s) 37, 69, 125, 144, 212, 290, 508
FaqI GGGAC 1 cut(s) 31
FatI CATG 3 cut(s) 35, 67, 123
Fnu4HI GCNGC 1 cut(s) 296
FokI GGATG 2 cut(s) 344, 408
Fsp4HI GCNGC 1 cut(s) 296
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 294
GluI GCNGC 1 cut(s) 296
HaeII RGCGCY 1 cut(s) 296
HaeIII GGCC 2 cut(s) 385, 413
HapII CCGG 2 cut(s) 218, 244
HhaI GCGC 1 cut(s) 295
Hin1II CATG 3 cut(s) 39, 71, 127
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HinfI GANTC 4 cut(s) 190, 283, 335, 347
HpaII CCGG 2 cut(s) 218, 244
HphI GGTGA 3 cut(s) 55, 278, 292
Hpy166II GTNNAC 2 cut(s) 57, 63
Hpy188I TCNGA 3 cut(s) 157, 340, 497
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 2 cut(s) 57, 63
HpyAV CCTTC 4 cut(s) 88, 200, 435, 463
HpyCH4III ACNGT 3 cut(s) 22, 169, 241
HpyCH4IV ACGT 4 cut(s) 46, 59, 200, 417
HpyCH4V TGCA 1 cut(s) 490
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
HpyF3I CTNAG 2 cut(s) 337, 407
HpySE526I ACGT 4 cut(s) 46, 59, 200, 417
Hsp92II CATG 3 cut(s) 39, 71, 127
HspAI GCGC 1 cut(s) 293
Kzo9I GATC 2 cut(s) 159, 492
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 1 cut(s) 298
MaeI CTAG 1 cut(s) 324
MaeII ACGT 4 cut(s) 46, 59, 200, 417
MaeIII GTNAC 1 cut(s) 196
MalI GATC 2 cut(s) 161, 494
MboI GATC 2 cut(s) 159, 492
MboII GAAGA 6 cut(s) 103, 184, 426, 429, 487, 490
MfeI CAATTG 1 cut(s) 261
MflI RGATCY 2 cut(s) 159, 492
MluCI AATT 4 cut(s) 179, 261, 429, 466
MlyI GAGTC 1 cut(s) 329
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 5 cut(s) 92, 225, 262, 271, 359
MspI CCGG 2 cut(s) 218, 244
MspR9I CCNGG 2 cut(s) 219, 313
MunI CAATTG 1 cut(s) 261
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 1 cut(s) 313
MwoI GCNNNNNNNGC 1 cut(s) 124
NciI CCSGG 1 cut(s) 219
NcoI CCATGG 1 cut(s) 35
NdeII GATC 2 cut(s) 159, 492
NlaIII CATG 3 cut(s) 39, 71, 127
NlaIV GGNNCC 2 cut(s) 19, 462
PctI GAATGC 1 cut(s) 370
PfeI GAWTC 3 cut(s) 190, 283, 347
PkrI GCNGC 1 cut(s) 297
PleI GAGTC 1 cut(s) 329
PpsI GAGTC 1 cut(s) 329
Psp1406I AACGTT 2 cut(s) 46, 417
Psp6I CCWGG 1 cut(s) 311
PspGI CCWGG 1 cut(s) 311
PspN4I GGNNCC 2 cut(s) 19, 462
PspPI GGNCC 3 cut(s) 18, 383, 411
PstNI CAGNNNCTG 1 cut(s) 344
PsuI RGATCY 2 cut(s) 159, 492
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 2 cut(s) 159, 492
Sau96I GGNCC 3 cut(s) 18, 383, 411
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 2 cut(s) 219, 313
SfaNI GCATC 1 cut(s) 298
SinI GGWCC 1 cut(s) 18
Sse9I AATT 4 cut(s) 179, 261, 429, 466
SspMI CTAG 1 cut(s) 324
StyD4I CCNGG 2 cut(s) 217, 311
StyI CCWWGG 2 cut(s) 35, 323
TaaI ACNGT 3 cut(s) 22, 169, 241
TaiI ACGT 4 cut(s) 49, 62, 203, 420
TasI AATT 4 cut(s) 179, 261, 429, 466
TfiI GAWTC 3 cut(s) 190, 283, 347
TscAI CASTG 1 cut(s) 447
TseI GCWGC 1 cut(s) 295
TspDTI ATGAA 2 cut(s) 84, 410
TspRI CASTG 1 cut(s) 447
VpaK11BI GGWCC 1 cut(s) 18
XapI RAATTY 1 cut(s) 179
XmaJI CCTAGG 1 cut(s) 323
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.