Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007023.1

Orthogroup ID

OG0029451

Physical Location & Seq

Genomic Coordinates Reverse (-)

35553 .. 36923

Gene Structure 1371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007023.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgttttatgagattgtggttgcacccaagtattcaaagaaagggctcgaaatccttcgtggaaaatcaaagactctgaggatcctcgaggcaagtaaaaatgagaaaggaaaactttcgcttagacaggttggtggtgggtggttagcccaggactcggatgatttaagaccccaagatatccagtttaatgttgtgtctaagaagtctccacaagaaagtgagctcagtgatgcagaatttgcatggttgtgtgtcaaacatgtcaagagcaatgcaattgtaatagcaaagaacctgggcctcattcgtcttcttgattacattgttaatgacattccaaaacatgaaccaaaaggcgttgtttcccggtatatggttgacggaggtctcagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523

Pfam Domains

Protein Families

AICARFT_IMPCHas MGS

Protein Analysis

132

Amino Acids

14.75

Weight (kDa)

9.32

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029451)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g03040
rosa_multiflora	Rmu_sc0007023.1_g000006

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	86
AclWI	GGATC	2 cut(s)	76, 89
AcsI	RAATTY	1 cut(s)	239
AfiI	CCNNNNNNNGG	2 cut(s)	157, 376
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	1 cut(s)	36
AjnI	CCWGG	2 cut(s)	150, 297
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	2 cut(s)	213, 395
AlwI	GGATC	2 cut(s)	76, 89
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	1 cut(s)	301
ApoI	RAATTY	1 cut(s)	239
Asp700I	GAANNNNTTC	2 cut(s)	54, 115
AspS9I	GGNCC	1 cut(s)	301
AsuC2I	CCSGG	1 cut(s)	370
AvaI	CYCGRG	1 cut(s)	86
BamHI	GGATCC	1 cut(s)	81
BanII	GRGCYC	2 cut(s)	48, 228
BbsI	GAAGAC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	228
BciT130I	CCWGG	2 cut(s)	152, 299
BcnI	CCSGG	1 cut(s)	370
BcoDI	GTCTC	2 cut(s)	213, 395
Bme1390I	CCNGG	3 cut(s)	152, 299, 370
BmeT110I	CYCGRG	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	3 cut(s)	152, 299, 370
BmsI	GCATC	1 cut(s)	223
BoxI	GACNNNNGTC	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	370
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	150, 298
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 376
Bse1I	ACTGG	1 cut(s)	184
Bse3DI	GCAATG	1 cut(s)	280
BseBI	CCWGG	2 cut(s)	152, 299
BseDI	CCNNGG	2 cut(s)	150, 298
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	2 cut(s)	157, 376
BseMI	GCAATG	1 cut(s)	280
BseMII	CTCAG	2 cut(s)	68, 241
BseNI	ACTGG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	370
BslI	CCNNNNNNNGG	2 cut(s)	157, 376
BsmAI	GTCTC	2 cut(s)	213, 395
BsnI	GGCC	1 cut(s)	303
Bso31I	GGTCTC	1 cut(s)	395
BsoBI	CYCGRG	1 cut(s)	86
Bsp1286I	GDGCHC	2 cut(s)	48, 228
Bsp143I	GATC	1 cut(s)	81
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	2 cut(s)	69, 240
BspLI	GGNNCC	1 cut(s)	83
BspPI	GGATC	2 cut(s)	76, 89
BspTNI	GGTCTC	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	150, 298
BssMI	GATC	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	152, 299
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstDEI	CTNAG	5 cut(s)	77, 122, 201, 227, 392
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	2 cut(s)	213, 395
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNI	CCWGG	2 cut(s)	152, 299
BstNSI	RCATGY	1 cut(s)	266
BstPAI	GACNNNNGTC	1 cut(s)	387
BstSCI	CCNGG	3 cut(s)	150, 297, 368
BstV2I	GAAGAC	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	301
CviAII	CATG	3 cut(s)	246, 263, 347
CviJI	RGCY	4 cut(s)	46, 149, 226, 303
CviKI_1	RGCY	4 cut(s)	46, 149, 226, 303
DdeI	CTNAG	5 cut(s)	77, 122, 201, 227, 392
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
Ecl136II	GAGCTC	1 cut(s)	226
Eco24I	GRGCYC	2 cut(s)	48, 228
Eco31I	GGTCTC	1 cut(s)	395
Eco32I	GATATC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	226
EcoRII	CCWGG	2 cut(s)	150, 297
EcoRV	GATATC	1 cut(s)	181
EcoT38I	GRGCYC	2 cut(s)	48, 228
FaeI	CATG	3 cut(s)	249, 266, 350
FaiI	YATR	6 cut(s)	9, 247, 264, 348, 375, 377
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FatI	CATG	3 cut(s)	245, 262, 346
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	2 cut(s)	48, 228
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	1 cut(s)	370
Hin1II	CATG	3 cut(s)	249, 266, 350
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	2 cut(s)	73, 155
HpaII	CCGG	1 cut(s)	370
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	2 cut(s)	78, 160
Hpy188III	TCNNGA	2 cut(s)	268, 317
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	1 cut(s)	65
HpyCH4V	TGCA	4 cut(s)	23, 236, 245, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	5 cut(s)	77, 122, 201, 227, 392
Hsp92II	CATG	3 cut(s)	249, 266, 350
Kzo9I	GATC	1 cut(s)	81
LpnPI	CCDG	7 cut(s)	113, 137, 164, 197, 284, 311, 383
LweI	GCATC	1 cut(s)	223
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	1 cut(s)	305
MfeI	CAATTG	1 cut(s)	279
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	2 cut(s)	48, 228
MluCI	AATT	2 cut(s)	239, 279
MlyI	GAGTC	2 cut(s)	67, 149
MnlI	CCTC	5 cut(s)	72, 82, 95, 314, 380
MroXI	GAANNNNTTC	2 cut(s)	54, 115
MseI	TTAA	3 cut(s)	167, 189, 330
MslI	CAYNNNNRTG	1 cut(s)	250
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	3 cut(s)	152, 299, 370
MunI	CAATTG	1 cut(s)	279
MvaI	CCWGG	2 cut(s)	152, 299
MwoI	GCNNNNNNNGC	1 cut(s)	242
NciI	CCSGG	1 cut(s)	370
NdeII	GATC	1 cut(s)	81
NlaIII	CATG	3 cut(s)	249, 266, 350
NlaIV	GGNNCC	1 cut(s)	83
NspI	RCATGY	1 cut(s)	266
PaeR7I	CTCGAG	1 cut(s)	86
PciI	ACATGT	1 cut(s)	262
PdmI	GAANNNNTTC	2 cut(s)	54, 115
PleI	GAGTC	2 cut(s)	67, 149
PpsI	GAGTC	2 cut(s)	67, 149
PscI	ACATGT	1 cut(s)	262
PshAI	GACNNNNGTC	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	150, 297
PspGI	CCWGG	2 cut(s)	150, 297
PspN4I	GGNNCC	1 cut(s)	83
PspPI	GGNCC	1 cut(s)	301
PspXI	VCTCGAGB	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	81
RseI	CAYNNNNRTG	1 cut(s)	250
SacI	GAGCTC	1 cut(s)	228
SaqAI	TTAA	3 cut(s)	167, 189, 330
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	301
SchI	GAGTC	2 cut(s)	67, 149
ScrFI	CCNGG	3 cut(s)	152, 299, 370
SduI	GDGCHC	2 cut(s)	48, 228
SetI	ASST	4 cut(s)	132, 228, 300, 391
SfaNI	GCATC	1 cut(s)	223
Sfr274I	CTCGAG	1 cut(s)	86
SlaI	CTCGAG	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	250
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	2 cut(s)	239, 279
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	3 cut(s)	150, 297, 368
TaqI	TCGA	2 cut(s)	48, 87
TasI	AATT	2 cut(s)	239, 279
Tru1I	TTAA	3 cut(s)	167, 189, 330
Tru9I	TTAA	3 cut(s)	167, 189, 330
TscAI	CASTG	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	363
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	1 cut(s)	235
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	1 cut(s)	266
XhoI	CTCGAG	1 cut(s)	86
XmnI	GAANNNNTTC	2 cut(s)	54, 115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.