Rmu_sc0007023.1_g000006

Bifunctional purine biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007023.1
OG0029451
Physical Location & Seq
Reverse (-)
35553 .. 36923
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 399 bp
atgttttatgagattgtggttgcacccaagtattcaaagaaagggctcgaaatccttcgtggaaaatcaaagactctgaggatcctcgaggcaagtaaaaatgagaaaggaaaactttcgcttagacaggttggtggtgggtggttagcccaggactcggatgatttaagaccccaagatatccagtttaatgttgtgtctaagaagtctccacaagaaagtgagctcagtgatgcagaatttgcatggttgtgtgtcaaacatgtcaagagcaatgcaattgtaatagcaaagaacctgggcctcattcgtcttcttgattacattgttaatgacattccaaaacatgaaccaaaaggcgttgtttcccggtatatggttgacggaggtctcagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
AICARFT_IMPCHas MGS

Protein Analysis

132

Amino Acids

14.75

Weight (kDa)

9.32

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AICARFT_IMPCHas PF01808 2 - 100 3.8e-27 AICARFT/IMPCHase bienzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029451)

Species Orthologous Gene IDs
pyrus_communis pycom14g03040
rosa_multiflora Rmu_sc0007023.1_g000006

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 86
AclWI GGATC 2 cut(s) 76, 89
AcsI RAATTY 1 cut(s) 239
AfiI CCNNNNNNNGG 2 cut(s) 157, 376
AflIII ACRYGT 1 cut(s) 262
AgsI TTSAA 1 cut(s) 36
AjnI CCWGG 2 cut(s) 150, 297
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 2 cut(s) 213, 395
AlwI GGATC 2 cut(s) 76, 89
Ama87I CYCGRG 1 cut(s) 86
AoxI GGCC 1 cut(s) 301
ApoI RAATTY 1 cut(s) 239
Asp700I GAANNNNTTC 2 cut(s) 54, 115
AspS9I GGNCC 1 cut(s) 301
AsuC2I CCSGG 1 cut(s) 370
AvaI CYCGRG 1 cut(s) 86
BamHI GGATCC 1 cut(s) 81
BanII GRGCYC 2 cut(s) 48, 228
BbsI GAAGAC 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 228
BciT130I CCWGG 2 cut(s) 152, 299
BcnI CCSGG 1 cut(s) 370
BcoDI GTCTC 2 cut(s) 213, 395
Bme1390I CCNGG 3 cut(s) 152, 299, 370
BmeT110I CYCGRG 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 83
BmrFI CCNGG 3 cut(s) 152, 299, 370
BmsI GCATC 1 cut(s) 223
BoxI GACNNNNGTC 1 cut(s) 387
BpiI GAAGAC 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 370
BsaI GGTCTC 1 cut(s) 395
BsaJI CCNNGG 2 cut(s) 150, 298
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 376
Bse1I ACTGG 1 cut(s) 184
Bse3DI GCAATG 1 cut(s) 280
BseBI CCWGG 2 cut(s) 152, 299
BseDI CCNNGG 2 cut(s) 150, 298
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 2 cut(s) 157, 376
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 2 cut(s) 68, 241
BseNI ACTGG 1 cut(s) 184
BshFI GGCC 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 1 cut(s) 370
BslI CCNNNNNNNGG 2 cut(s) 157, 376
BsmAI GTCTC 2 cut(s) 213, 395
BsnI GGCC 1 cut(s) 303
Bso31I GGTCTC 1 cut(s) 395
BsoBI CYCGRG 1 cut(s) 86
Bsp1286I GDGCHC 2 cut(s) 48, 228
Bsp143I GATC 1 cut(s) 81
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 2 cut(s) 69, 240
BspLI GGNNCC 1 cut(s) 83
BspPI GGATC 2 cut(s) 76, 89
BspTNI GGTCTC 1 cut(s) 395
BsrDI GCAATG 1 cut(s) 280
BsrI ACTGG 1 cut(s) 184
BssECI CCNNGG 2 cut(s) 150, 298
BssMI GATC 1 cut(s) 81
Bst2UI CCWGG 2 cut(s) 152, 299
BstAPI GCANNNNNTGC 1 cut(s) 242
BstDEI CTNAG 5 cut(s) 77, 122, 201, 227, 392
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 1 cut(s) 84
BstMAI GTCTC 2 cut(s) 213, 395
BstMBI GATC 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 2 cut(s) 152, 299
BstNSI RCATGY 1 cut(s) 266
BstPAI GACNNNNGTC 1 cut(s) 387
BstSCI CCNGG 3 cut(s) 150, 297, 368
BstV2I GAAGAC 1 cut(s) 305
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuRI GGCC 1 cut(s) 303
BtsCI GGATG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 301
CviAII CATG 3 cut(s) 246, 263, 347
CviJI RGCY 4 cut(s) 46, 149, 226, 303
CviKI_1 RGCY 4 cut(s) 46, 149, 226, 303
DdeI CTNAG 5 cut(s) 77, 122, 201, 227, 392
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 226
Eco24I GRGCYC 2 cut(s) 48, 228
Eco31I GGTCTC 1 cut(s) 395
Eco32I GATATC 1 cut(s) 181
Eco53kI GAGCTC 1 cut(s) 226
Eco88I CYCGRG 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 226
EcoRII CCWGG 2 cut(s) 150, 297
EcoRV GATATC 1 cut(s) 181
EcoT38I GRGCYC 2 cut(s) 48, 228
FaeI CATG 3 cut(s) 249, 266, 350
FaiI YATR 6 cut(s) 9, 247, 264, 348, 375, 377
FalI AAGNNNNNCTT 2 cut(s) 99, 131
FatI CATG 3 cut(s) 245, 262, 346
FokI GGATG 1 cut(s) 173
FriOI GRGCYC 2 cut(s) 48, 228
HaeIII GGCC 1 cut(s) 303
HapII CCGG 1 cut(s) 370
Hin1II CATG 3 cut(s) 249, 266, 350
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 2 cut(s) 73, 155
HpaII CCGG 1 cut(s) 370
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 2 cut(s) 78, 160
Hpy188III TCNNGA 2 cut(s) 268, 317
Hpy8I GTNNAC 1 cut(s) 382
HpyAV CCTTC 1 cut(s) 65
HpyCH4V TGCA 4 cut(s) 23, 236, 245, 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 5 cut(s) 77, 122, 201, 227, 392
Hsp92II CATG 3 cut(s) 249, 266, 350
Kzo9I GATC 1 cut(s) 81
LpnPI CCDG 7 cut(s) 113, 137, 164, 197, 284, 311, 383
LweI GCATC 1 cut(s) 223
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 1 cut(s) 305
MfeI CAATTG 1 cut(s) 279
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 2 cut(s) 48, 228
MluCI AATT 2 cut(s) 239, 279
MlyI GAGTC 2 cut(s) 67, 149
MnlI CCTC 5 cut(s) 72, 82, 95, 314, 380
MroXI GAANNNNTTC 2 cut(s) 54, 115
MseI TTAA 3 cut(s) 167, 189, 330
MslI CAYNNNNRTG 1 cut(s) 250
MspI CCGG 1 cut(s) 370
MspR9I CCNGG 3 cut(s) 152, 299, 370
MunI CAATTG 1 cut(s) 279
MvaI CCWGG 2 cut(s) 152, 299
MwoI GCNNNNNNNGC 1 cut(s) 242
NciI CCSGG 1 cut(s) 370
NdeII GATC 1 cut(s) 81
NlaIII CATG 3 cut(s) 249, 266, 350
NlaIV GGNNCC 1 cut(s) 83
NspI RCATGY 1 cut(s) 266
PaeR7I CTCGAG 1 cut(s) 86
PciI ACATGT 1 cut(s) 262
PdmI GAANNNNTTC 2 cut(s) 54, 115
PleI GAGTC 2 cut(s) 67, 149
PpsI GAGTC 2 cut(s) 67, 149
PscI ACATGT 1 cut(s) 262
PshAI GACNNNNGTC 1 cut(s) 387
Psp124BI GAGCTC 1 cut(s) 228
Psp6I CCWGG 2 cut(s) 150, 297
PspGI CCWGG 2 cut(s) 150, 297
PspN4I GGNNCC 1 cut(s) 83
PspPI GGNCC 1 cut(s) 301
PspXI VCTCGAGB 1 cut(s) 86
PsuI RGATCY 1 cut(s) 81
RseI CAYNNNNRTG 1 cut(s) 250
SacI GAGCTC 1 cut(s) 228
SaqAI TTAA 3 cut(s) 167, 189, 330
Sau3AI GATC 1 cut(s) 81
Sau96I GGNCC 1 cut(s) 301
SchI GAGTC 2 cut(s) 67, 149
ScrFI CCNGG 3 cut(s) 152, 299, 370
SduI GDGCHC 2 cut(s) 48, 228
SetI ASST 4 cut(s) 132, 228, 300, 391
SfaNI GCATC 1 cut(s) 223
Sfr274I CTCGAG 1 cut(s) 86
SlaI CTCGAG 1 cut(s) 86
SmiMI CAYNNNNRTG 1 cut(s) 250
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 2 cut(s) 239, 279
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 3 cut(s) 150, 297, 368
TaqI TCGA 2 cut(s) 48, 87
TasI AATT 2 cut(s) 239, 279
Tru1I TTAA 3 cut(s) 167, 189, 330
Tru9I TTAA 3 cut(s) 167, 189, 330
TscAI CASTG 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 363
TspGWI ACGGA 1 cut(s) 399
TspRI CASTG 1 cut(s) 235
XapI RAATTY 1 cut(s) 239
XceI RCATGY 1 cut(s) 266
XhoI CTCGAG 1 cut(s) 86
XmnI GAANNNNTTC 2 cut(s) 54, 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.