Rmu_sc0007029.1_g000002

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007029.1
OG0031382
Physical Location & Seq
Reverse (-)
4686 .. 5246
561 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 561 bp
atgaaagcagaatttgaaatggttcatgggactgtgaatatgatccaaccccatgaaactaattggattaacaattcgacctccgttaatccattcccaaagcctgtaagcgatctctctcagtgggtagagcacataacgaagcaactcatcgatgacttgccggaaacagccaccaccaccgcagacactttgcacactgaagcaacatccggggatcagtacttcatcccaccgtcacattccggagagtttagtccgagaaaagcccccaggaaaaactacggcgacgacacaagtgctgatcgtgtagattacgacttgcagtggggaaatgagctgcaactccatgcagaaaacaacaggagagctagagggttgagtaagcttgaccagcatggattaacactaattactcaaccctctagctctcctgttgttttctgcatggagttgcagctcatttccccactgcaagtcgtaatctacacgatcagcacttgtgtcgtcgccgtagtttttcctgggggcttttctcggactaaactctccggaatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

186

Amino Acids

20.71

Weight (kDa)

5.4

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031382)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0007029.1_g000002
rosa_roxburghii Rroxscaffold_7G00181050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 245, 551
AciI CCGC 1 cut(s) 183
AclWI GGATC 2 cut(s) 37, 225
AcsI RAATTY 1 cut(s) 11
AcuI CTGAAG 1 cut(s) 222
AfaI GTAC 1 cut(s) 224
AgsI TTSAA 1 cut(s) 17
AjnI CCWGG 2 cut(s) 272, 523
AluBI AGCT 5 cut(s) 340, 371, 388, 429, 460
AluI AGCT 5 cut(s) 340, 371, 388, 429, 460
Alw21I GWGCWC 1 cut(s) 135
AlwI GGATC 2 cut(s) 37, 225
Aor13HI TCCGGA 2 cut(s) 245, 551
ApeKI GCWGC 2 cut(s) 340, 457
ApoI RAATTY 1 cut(s) 11
Asp700I GAANNNNTTC 1 cut(s) 21
AsuC2I CCSGG 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 327, 469
BceAI ACGGC 2 cut(s) 301, 497
BcgI CGANNNNNNTGC 4 cut(s) 281, 315, 487, 521
BciT130I CCWGG 2 cut(s) 274, 525
BcnI CCSGG 1 cut(s) 214
BfaI CTAG 2 cut(s) 372, 426
BisI GCNGC 2 cut(s) 341, 458
BlsI GCNGC 2 cut(s) 342, 459
BmcAI AGTACT 1 cut(s) 224
Bme1390I CCNGG 3 cut(s) 214, 274, 525
BmrFI CCNGG 3 cut(s) 214, 274, 525
BpuMI CCSGG 1 cut(s) 214
Bsa29I ATCGAT 1 cut(s) 153
BsaJI CCNNGG 3 cut(s) 213, 272, 524
BsaWI WCCGGW 2 cut(s) 245, 551
BseAI TCCGGA 2 cut(s) 245, 551
BseBI CCWGG 2 cut(s) 274, 525
BseCI ATCGAT 1 cut(s) 153
BseDI CCNNGG 3 cut(s) 213, 272, 524
BseGI GGATG 2 cut(s) 209, 228
BseMII CTCAG 1 cut(s) 134
BseXI GCAGC 2 cut(s) 327, 469
BshVI ATCGAT 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 4 cut(s) 164, 213, 246, 552
BslFI GGGAC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 135
Bsp13I TCCGGA 2 cut(s) 245, 551
Bsp143I GATC 5 cut(s) 42, 112, 217, 304, 492
BspACI CCGC 1 cut(s) 183
BspCNI CTCAG 1 cut(s) 133
BspDI ATCGAT 1 cut(s) 153
BspEI TCCGGA 2 cut(s) 245, 551
BspPI GGATC 2 cut(s) 37, 225
BssECI CCNNGG 3 cut(s) 213, 272, 524
BssMI GATC 5 cut(s) 42, 112, 217, 304, 492
Bst2UI CCWGG 2 cut(s) 274, 525
Bst4CI ACNGT 2 cut(s) 34, 237
BstDEI CTNAG 1 cut(s) 120
BstF5I GGATG 2 cut(s) 209, 228
BstKTI GATC 5 cut(s) 45, 115, 220, 307, 495
BstMBI GATC 5 cut(s) 42, 112, 217, 304, 492
BstMWI GCNNNNNNNGC 1 cut(s) 394
BstNI CCWGG 2 cut(s) 274, 525
BstSCI CCNGG 3 cut(s) 212, 272, 523
BstV1I GCAGC 2 cut(s) 327, 469
Bsu15I ATCGAT 1 cut(s) 153
BsuTUI ATCGAT 1 cut(s) 153
BtsCI GGATG 2 cut(s) 209, 228
BtsI GCAGTG 2 cut(s) 332, 470
BtsIMutI CAGTG 4 cut(s) 128, 198, 332, 470
ClaI ATCGAT 1 cut(s) 153
Csp6I GTAC 1 cut(s) 223
CviAII CATG 5 cut(s) 26, 53, 350, 398, 448
CviJI RGCY 9 cut(s) 103, 173, 269, 340, 371, 388, 429, 460, 531
CviKI_1 RGCY 9 cut(s) 103, 173, 269, 340, 371, 388, 429, 460, 531
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 1 cut(s) 120
DpnI GATC 5 cut(s) 44, 114, 219, 306, 494
DpnII GATC 5 cut(s) 42, 112, 217, 304, 492
Eco57I CTGAAG 1 cut(s) 222
EcoRII CCWGG 2 cut(s) 272, 523
FaeI CATG 5 cut(s) 29, 56, 353, 401, 451
FaiI YATR 7 cut(s) 27, 41, 54, 137, 351, 399, 449
FaqI GGGAC 1 cut(s) 43
FatI CATG 5 cut(s) 25, 52, 349, 397, 447
Fnu4HI GCNGC 2 cut(s) 341, 458
FokI GGATG 2 cut(s) 196, 215
Fsp4HI GCNGC 2 cut(s) 341, 458
FspBI CTAG 2 cut(s) 372, 426
GluI GCNGC 2 cut(s) 341, 458
HapII CCGG 4 cut(s) 164, 213, 246, 552
Hin1II CATG 5 cut(s) 29, 56, 353, 401, 451
HindIII AAGCTT 1 cut(s) 386
HpaII CCGG 4 cut(s) 164, 213, 246, 552
Hpy188I TCNGA 2 cut(s) 261, 540
Hpy188III TCNNGA 2 cut(s) 246, 552
Hpy99I CGWCG 2 cut(s) 293, 512
HpyCH4III ACNGT 2 cut(s) 34, 237
HpyCH4V TGCA 7 cut(s) 196, 325, 343, 353, 447, 457, 475
HpyF10VI GCNNNNNNNGC 1 cut(s) 394
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 5 cut(s) 29, 56, 353, 401, 451
Kpn2I TCCGGA 2 cut(s) 245, 551
Kzo9I GATC 5 cut(s) 42, 112, 217, 304, 492
Lsp1109I GCAGC 2 cut(s) 327, 469
MaeI CTAG 2 cut(s) 372, 426
MaeIII GTNAC 1 cut(s) 237
MalI GATC 5 cut(s) 44, 114, 219, 306, 494
MboI GATC 5 cut(s) 42, 112, 217, 304, 492
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 4 cut(s) 11, 61, 73, 411
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 3 cut(s) 91, 368, 433
MroI TCCGGA 2 cut(s) 245, 551
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 3 cut(s) 69, 87, 404
MspI CCGG 4 cut(s) 164, 213, 246, 552
MspR9I CCNGG 3 cut(s) 214, 274, 525
MvaI CCWGG 2 cut(s) 274, 525
MwoI GCNNNNNNNGC 1 cut(s) 394
NciI CCSGG 1 cut(s) 214
NdeII GATC 5 cut(s) 42, 112, 217, 304, 492
NlaIII CATG 5 cut(s) 29, 56, 353, 401, 451
NmuCI GTSAC 1 cut(s) 237
PdmI GAANNNNTTC 1 cut(s) 21
PkrI GCNGC 2 cut(s) 342, 459
Psp6I CCWGG 2 cut(s) 272, 523
PspGI CCWGG 2 cut(s) 272, 523
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SaqAI TTAA 3 cut(s) 69, 87, 404
SatI GCNGC 2 cut(s) 341, 458
Sau3AI GATC 5 cut(s) 42, 112, 217, 304, 492
ScaI AGTACT 1 cut(s) 224
ScrFI CCNGG 3 cut(s) 214, 274, 525
SduI GDGCHC 1 cut(s) 135
SetI ASST 6 cut(s) 83, 342, 373, 390, 431, 462
Sse9I AATT 4 cut(s) 11, 61, 73, 411
SsiI CCGC 1 cut(s) 183
SspMI CTAG 2 cut(s) 372, 426
StyD4I CCNGG 3 cut(s) 212, 272, 523
TaaI ACNGT 2 cut(s) 34, 237
TaqI TCGA 2 cut(s) 77, 153
TasI AATT 4 cut(s) 11, 61, 73, 411
TatI WGTACW 1 cut(s) 222
Tru1I TTAA 3 cut(s) 69, 87, 404
Tru9I TTAA 3 cut(s) 69, 87, 404
TscAI CASTG 4 cut(s) 128, 205, 332, 477
TseFI GTSAC 1 cut(s) 237
TseI GCWGC 2 cut(s) 340, 457
Tsp45I GTSAC 1 cut(s) 237
TspDTI ATGAA 4 cut(s) 14, 17, 69, 217
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 4 cut(s) 128, 205, 332, 477
XapI RAATTY 1 cut(s) 11
XmnI GAANNNNTTC 1 cut(s) 21
XspI CTAG 2 cut(s) 372, 426
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.