Rroxscaffold_7G00181050

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0031382
Physical Location & Seq
Reverse (-)
20313787 .. 20314302
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00181050.1

Sequence Viewer

Length: 516 bp
ATGAAACTAATTGGGATTAACAATTCGACCTCCGTTAATCCATTCCCAAAGCCTGTAAGCGATCTCTCTCAGTGGGTAGAGCACATAACGAAGCAACTCATCGATGACTTGCCGGAAACAGCCACCACCACCGCAGACACTTTGCACACTGCAGCAACATCCGGGGATCAGTACTTCATCCCCTCGTCACATTCCGGAGAGTTTAGTCCGAGAAAAACCCCCAGGAAAAACTACGGCGACGACACAAGTGCTGATCGTGCAGATTACGACTTGCAGTGGGGAAATGAGCTGCAACTCCATGCAGAAAACAACAGGAGAGCTAGAGGGTTGAGTAAGCTTGATCAGCATGGCTTAAGCCTAATTACTCTTCTGTTCGAAATGTGCGGTTGCAATCTCCGTGGAGAACCCCGGCGAGGCACATCGGATGCTGCTCGAGCTCACCCAGATGGCCTCGCCGTATGGGCCATCCTGCGCGGAGCGCGTGGTGGCATATTTTGCCAAGGCCATGTCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

171

Amino Acids

18.81

Weight (kDa)

6.15

Isoelectric Point (pI)

23.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031382)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0007029.1_g000002
rosa_roxburghii Rroxscaffold_7G00181050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 474, 481
AccIII TCCGGA 1 cut(s) 194
AciI CCGC 3 cut(s) 132, 384, 474
AclWI GGATC 1 cut(s) 174
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 1 cut(s) 413
AflII CTTAAG 1 cut(s) 352
AjnI CCWGG 1 cut(s) 221
AluBI AGCT 4 cut(s) 289, 320, 337, 437
AluI AGCT 4 cut(s) 289, 320, 337, 437
Alw21I GWGCWC 2 cut(s) 84, 439
AlwI GGATC 1 cut(s) 174
Ama87I CYCGRG 1 cut(s) 432
Aor13HI TCCGGA 1 cut(s) 194
AoxI GGCC 3 cut(s) 448, 462, 502
ApeKI GCWGC 3 cut(s) 152, 289, 428
AspLEI GCGC 2 cut(s) 474, 481
AspS9I GGNCC 1 cut(s) 462
AsuC2I CCSGG 2 cut(s) 163, 409
AsuHPI GGTGA 1 cut(s) 431
AsuII TTCGAA 1 cut(s) 375
AvaI CYCGRG 1 cut(s) 432
BanII GRGCYC 1 cut(s) 439
Bbv12I GWGCWC 2 cut(s) 84, 439
BbvI GCAGC 3 cut(s) 164, 276, 415
BccI CCATC 2 cut(s) 440, 473
BceAI ACGGC 2 cut(s) 250, 440
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BciT130I CCWGG 1 cut(s) 223
BclI TGATCA 1 cut(s) 340
BcnI CCSGG 2 cut(s) 163, 409
BfaI CTAG 1 cut(s) 321
BfmI CTRYAG 1 cut(s) 150
BfrI CTTAAG 1 cut(s) 352
BglI GCCNNNNNGGC 1 cut(s) 461
BisI GCNGC 3 cut(s) 153, 290, 429
BlsI GCNGC 3 cut(s) 154, 291, 430
BmcAI AGTACT 1 cut(s) 173
Bme1390I CCNGG 3 cut(s) 163, 223, 409
BmeT110I CYCGRG 1 cut(s) 432
BmgT120I GGNCC 1 cut(s) 462
BmrFI CCNGG 3 cut(s) 163, 223, 409
BmsI GCATC 1 cut(s) 415
Bpu14I TTCGAA 1 cut(s) 375
BpuMI CCSGG 2 cut(s) 163, 409
Bsa29I ATCGAT 1 cut(s) 102
BsaJI CCNNGG 5 cut(s) 162, 221, 397, 407, 499
BsaWI WCCGGW 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 413
BseAI TCCGGA 1 cut(s) 194
BseBI CCWGG 1 cut(s) 223
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 5 cut(s) 162, 221, 397, 407, 499
BseGI GGATG 4 cut(s) 158, 177, 430, 465
BseLI CCNNNNNNNGG 1 cut(s) 413
BseMII CTCAG 1 cut(s) 83
BseXI GCAGC 3 cut(s) 164, 276, 415
BsgI GTGCAG 1 cut(s) 279
Bsh1236I CGCG 2 cut(s) 474, 481
BshFI GGCC 3 cut(s) 450, 464, 504
BshVI ATCGAT 1 cut(s) 102
BsiHKAI GWGCWC 2 cut(s) 84, 439
BsiHKCI CYCGRG 1 cut(s) 432
BsiSI CCGG 4 cut(s) 113, 162, 195, 409
BslI CCNNNNNNNGG 1 cut(s) 413
BsnI GGCC 3 cut(s) 450, 464, 504
BsoBI CYCGRG 1 cut(s) 432
Bsp119I TTCGAA 1 cut(s) 375
Bsp1286I GDGCHC 2 cut(s) 84, 439
Bsp13I TCCGGA 1 cut(s) 194
Bsp143I GATC 4 cut(s) 61, 166, 253, 340
BspACI CCGC 3 cut(s) 132, 384, 474
BspANI GGCC 3 cut(s) 450, 464, 504
BspCNI CTCAG 1 cut(s) 82
BspDI ATCGAT 1 cut(s) 102
BspEI TCCGGA 1 cut(s) 194
BspFNI CGCG 2 cut(s) 474, 481
BspMAI CTGCAG 1 cut(s) 154
BspPI GGATC 1 cut(s) 174
BspT104I TTCGAA 1 cut(s) 375
BspTI CTTAAG 1 cut(s) 352
BssECI CCNNGG 5 cut(s) 162, 221, 397, 407, 499
BssMI GATC 4 cut(s) 61, 166, 253, 340
BssT1I CCWWGG 1 cut(s) 499
Bst2UI CCWGG 1 cut(s) 223
Bst6I CTCTTC 1 cut(s) 372
BstAFI CTTAAG 1 cut(s) 352
BstAPI GCANNNNNTGC 1 cut(s) 495
BstBI TTCGAA 1 cut(s) 375
BstDEI CTNAG 1 cut(s) 69
BstDSI CCRYGG 1 cut(s) 397
BstF5I GGATG 4 cut(s) 158, 177, 430, 465
BstFNI CGCG 2 cut(s) 474, 481
BstHHI GCGC 2 cut(s) 474, 481
BstKTI GATC 4 cut(s) 64, 169, 256, 343
BstMBI GATC 4 cut(s) 61, 166, 253, 340
BstMWI GCNNNNNNNGC 6 cut(s) 257, 343, 434, 461, 478, 495
BstNI CCWGG 1 cut(s) 223
BstSCI CCNGG 3 cut(s) 161, 221, 407
BstSFI CTRYAG 1 cut(s) 150
BstUI CGCG 2 cut(s) 474, 481
BstV1I GCAGC 3 cut(s) 164, 276, 415
Bsu15I ATCGAT 1 cut(s) 102
BsuRI GGCC 3 cut(s) 450, 464, 504
BsuTUI ATCGAT 1 cut(s) 102
BtgI CCRYGG 1 cut(s) 397
BtsCI GGATG 4 cut(s) 158, 177, 430, 465
BtsI GCAGTG 2 cut(s) 147, 281
BtsIMutI CAGTG 3 cut(s) 77, 147, 281
CfoI GCGC 2 cut(s) 474, 481
Cfr13I GGNCC 1 cut(s) 462
ClaI ATCGAT 1 cut(s) 102
Csp6I GTAC 1 cut(s) 172
CspCI CAANNNNNGTGG 2 cut(s) 379, 414
CviAII CATG 3 cut(s) 299, 347, 506
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 1 cut(s) 69
DpnI GATC 4 cut(s) 63, 168, 255, 342
DpnII GATC 4 cut(s) 61, 166, 253, 340
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Ecl136II GAGCTC 1 cut(s) 437
Eco130I CCWWGG 1 cut(s) 499
Eco24I GRGCYC 1 cut(s) 439
Eco53kI GAGCTC 1 cut(s) 437
Eco88I CYCGRG 1 cut(s) 432
EcoICRI GAGCTC 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 221
EcoT14I CCWWGG 1 cut(s) 499
EcoT38I GRGCYC 1 cut(s) 439
ErhI CCWWGG 1 cut(s) 499
FaeI CATG 3 cut(s) 302, 350, 509
FaiI YATR 6 cut(s) 86, 300, 348, 460, 491, 507
FatI CATG 3 cut(s) 298, 346, 505
FbaI TGATCA 1 cut(s) 340
Fnu4HI GCNGC 3 cut(s) 153, 290, 429
FokI GGATG 4 cut(s) 145, 164, 437, 452
FriOI GRGCYC 1 cut(s) 439
Fsp4HI GCNGC 3 cut(s) 153, 290, 429
FspBI CTAG 1 cut(s) 321
GlaI GCGC 2 cut(s) 473, 480
GluI GCNGC 3 cut(s) 153, 290, 429
HaeIII GGCC 3 cut(s) 450, 464, 504
HapII CCGG 4 cut(s) 113, 162, 195, 409
HhaI GCGC 2 cut(s) 474, 481
Hin1II CATG 3 cut(s) 302, 350, 509
Hin6I GCGC 2 cut(s) 472, 479
HinP1I GCGC 2 cut(s) 472, 479
HindIII AAGCTT 1 cut(s) 335
HpaII CCGG 4 cut(s) 113, 162, 195, 409
HphI GGTGA 1 cut(s) 431
Hpy188I TCNGA 2 cut(s) 210, 424
Hpy188III TCNNGA 1 cut(s) 195
Hpy99I CGWCG 1 cut(s) 242
HpyCH4V TGCA 7 cut(s) 145, 152, 260, 274, 292, 302, 390
HpyF10VI GCNNNNNNNGC 6 cut(s) 257, 343, 434, 461, 478, 495
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 3 cut(s) 302, 350, 509
HspAI GCGC 2 cut(s) 472, 479
Kpn2I TCCGGA 1 cut(s) 194
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 4 cut(s) 61, 166, 253, 340
LmnI GCTCC 1 cut(s) 476
Lsp1109I GCAGC 3 cut(s) 164, 276, 415
LweI GCATC 1 cut(s) 415
MaeI CTAG 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 186
MalI GATC 4 cut(s) 63, 168, 255, 342
MboI GATC 4 cut(s) 61, 166, 253, 340
MboII GAAGA 1 cut(s) 359
MhlI GDGCHC 2 cut(s) 84, 439
MluCI AATT 3 cut(s) 9, 22, 360
MnlI CCTC 5 cut(s) 40, 193, 317, 407, 461
MroI TCCGGA 1 cut(s) 194
MseI TTAA 3 cut(s) 18, 36, 353
MslI CAYNNNNRTG 1 cut(s) 444
MspCI CTTAAG 1 cut(s) 352
MspI CCGG 4 cut(s) 113, 162, 195, 409
MspR9I CCNGG 3 cut(s) 163, 223, 409
MvaI CCWGG 1 cut(s) 223
MvnI CGCG 2 cut(s) 474, 481
MwoI GCNNNNNNNGC 6 cut(s) 257, 343, 434, 461, 478, 495
NciI CCSGG 2 cut(s) 163, 409
NdeII GATC 4 cut(s) 61, 166, 253, 340
NlaIII CATG 3 cut(s) 302, 350, 509
NmuCI GTSAC 1 cut(s) 186
NspV TTCGAA 1 cut(s) 375
PaeR7I CTCGAG 1 cut(s) 432
PkrI GCNGC 3 cut(s) 154, 291, 430
Psp124BI GAGCTC 1 cut(s) 439
Psp6I CCWGG 1 cut(s) 221
PspGI CCWGG 1 cut(s) 221
PspPI GGNCC 1 cut(s) 462
PspXI VCTCGAGB 1 cut(s) 432
PstI CTGCAG 1 cut(s) 154
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 444
SacI GAGCTC 1 cut(s) 439
SaqAI TTAA 3 cut(s) 18, 36, 353
SatI GCNGC 3 cut(s) 153, 290, 429
Sau3AI GATC 4 cut(s) 61, 166, 253, 340
Sau96I GGNCC 1 cut(s) 462
ScaI AGTACT 1 cut(s) 173
ScrFI CCNGG 3 cut(s) 163, 223, 409
SduI GDGCHC 2 cut(s) 84, 439
SetI ASST 5 cut(s) 32, 291, 322, 339, 439
SfaNI GCATC 1 cut(s) 415
SfcI CTRYAG 1 cut(s) 150
Sfr274I CTCGAG 1 cut(s) 432
SfuI TTCGAA 1 cut(s) 375
SlaI CTCGAG 1 cut(s) 432
SmiMI CAYNNNNRTG 1 cut(s) 444
SmlI CTYRAG 2 cut(s) 352, 432
SmoI CTYRAG 2 cut(s) 352, 432
Sse9I AATT 3 cut(s) 9, 22, 360
SsiI CCGC 3 cut(s) 132, 384, 474
SspMI CTAG 1 cut(s) 321
SstI GAGCTC 1 cut(s) 439
StyD4I CCNGG 3 cut(s) 161, 221, 407
StyI CCWWGG 1 cut(s) 499
TaqI TCGA 5 cut(s) 26, 102, 375, 433, 510
TasI AATT 3 cut(s) 9, 22, 360
TatI WGTACW 1 cut(s) 171
Tru1I TTAA 3 cut(s) 18, 36, 353
Tru9I TTAA 3 cut(s) 18, 36, 353
TscAI CASTG 3 cut(s) 77, 154, 281
TseFI GTSAC 1 cut(s) 186
TseI GCWGC 3 cut(s) 152, 289, 428
Tsp45I GTSAC 1 cut(s) 186
TspDTI ATGAA 2 cut(s) 17, 166
TspGWI ACGGA 2 cut(s) 22, 386
TspRI CASTG 3 cut(s) 77, 154, 281
Vha464I CTTAAG 1 cut(s) 352
XhoI CTCGAG 1 cut(s) 432
XspI CTAG 1 cut(s) 321
ZrmI AGTACT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.