Rmu_sc0007059.1_g000002

Acetylornithine deacetylase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007059.1
OG0031383
Physical Location & Seq
Reverse (-)
8534 .. 10090
1557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007059.1_g000002.1.cds

Sequence Viewer

Length: 606 bp
atggaagcactgaaggagatccaatctcggttctatagagattttcctccccatgataaggaaaaggtgtatggatatgcaacaccatcaaccatgaaaccaactcaatggaaatatccaggtggtggaataaatcaaattccttttgagtgtacaatttcaggagatgtcaggttaactccattctacaacgttacggatgtgatgaaaaagcttcaagaatatgtggatgacattaatgaaaacataacaaagctagactcacgaggtccagtttcaaagtatgtcctgcctgatgaaaacttacggggaagacttacaataagcttcgatgagacatcatctggagttgcttgtgacctggagtctcgcggctttcatgtattatgcaaagctactgaagaggttgttggccatgtgaagccttactcaattactggaactttgcctctcattagagagctgcaggatgaaggattcgatgttcaaacttctggatatggcttgatgtccacataccatgccaagaacgagtactgcctattttctgatatggcggaaggctaccgggtgtttgcaagtgttatctcccaactagaagattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

201

Amino Acids

22.77

Weight (kDa)

4.98

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031383)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0007059.1_g000002 Rmu_sc0014152.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 125
AccII CGCG 1 cut(s) 372
AciI CCGC 2 cut(s) 372, 557
AclI AACGTT 1 cut(s) 192
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 412
AcsI RAATTY 1 cut(s) 138
AcuI CTGAAG 2 cut(s) 32, 420
AfaI GTAC 2 cut(s) 154, 536
AfiI CCNNNNNNNGG 2 cut(s) 58, 125
AgsI TTSAA 3 cut(s) 218, 279, 488
AhdI GACNNNNNGTC 1 cut(s) 364
AjnI CCWGG 2 cut(s) 118, 360
AjuI GAANNNNNNNTTGG 2 cut(s) 393, 425
AloI GAACNNNNNNTCC 2 cut(s) 468, 500
AluBI AGCT 5 cut(s) 214, 256, 327, 395, 463
AluI AGCT 5 cut(s) 214, 256, 327, 395, 463
Alw26I GTCTC 2 cut(s) 329, 372
AlwI GGATC 1 cut(s) 13
AoxI GGCC 1 cut(s) 412
ApeKI GCWGC 1 cut(s) 463
ApoI RAATTY 1 cut(s) 138
AseI ATTAAT 1 cut(s) 237
AspS9I GGNCC 1 cut(s) 269
AsuC2I CCSGG 1 cut(s) 569
AvaII GGWCC 1 cut(s) 269
BalI TGGCCA 1 cut(s) 414
BauI CACGAG 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 319
BbvI GCAGC 1 cut(s) 450
BccI CCATC 1 cut(s) 94
BciT130I CCWGG 2 cut(s) 120, 362
BcnI CCSGG 1 cut(s) 569
BcoDI GTCTC 2 cut(s) 329, 372
BfaI CTAG 2 cut(s) 257, 596
BfmI CTRYAG 2 cut(s) 34, 464
BisI GCNGC 2 cut(s) 373, 464
BlsI GCNGC 2 cut(s) 374, 465
BmcAI AGTACT 1 cut(s) 536
Bme1390I CCNGG 3 cut(s) 120, 362, 569
Bme18I GGWCC 1 cut(s) 269
BmeRI GACNNNNNGTC 1 cut(s) 364
BmgT120I GGNCC 1 cut(s) 269
BmrFI CCNGG 3 cut(s) 120, 362, 569
BpiI GAAGAC 1 cut(s) 319
BpmI CTGGAG 2 cut(s) 366, 383
BpuMI CCSGG 1 cut(s) 569
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 125
Bse1I ACTGG 2 cut(s) 272, 442
BseBI CCWGG 2 cut(s) 120, 362
BseGI GGATG 3 cut(s) 205, 235, 475
BseLI CCNNNNNNNGG 2 cut(s) 58, 125
BseNI ACTGG 2 cut(s) 272, 442
BseXI GCAGC 1 cut(s) 450
Bsh1236I CGCG 1 cut(s) 372
BshFI GGCC 1 cut(s) 414
BsiSI CCGG 1 cut(s) 568
BslI CCNNNNNNNGG 2 cut(s) 58, 125
BsmAI GTCTC 2 cut(s) 329, 372
BsnI GGCC 1 cut(s) 414
Bsp1407I TGTACA 1 cut(s) 152
Bsp143I GATC 1 cut(s) 18
BspACI CCGC 2 cut(s) 372, 557
BspANI GGCC 1 cut(s) 414
BspFNI CGCG 1 cut(s) 372
BspMAI CTGCAG 1 cut(s) 468
BspPI GGATC 1 cut(s) 13
BsrGI TGTACA 1 cut(s) 152
BsrI ACTGG 2 cut(s) 272, 442
BssMI GATC 1 cut(s) 18
BssSI CACGAG 1 cut(s) 264
Bst2BI CACGAG 1 cut(s) 264
Bst2UI CCWGG 2 cut(s) 120, 362
Bst6I CTCTTC 1 cut(s) 396
BstAUI TGTACA 1 cut(s) 152
BstF5I GGATG 3 cut(s) 205, 235, 475
BstFNI CGCG 1 cut(s) 372
BstKTI GATC 1 cut(s) 21
BstMAI GTCTC 2 cut(s) 329, 372
BstMBI GATC 1 cut(s) 18
BstNI CCWGG 2 cut(s) 120, 362
BstSCI CCNGG 3 cut(s) 118, 360, 567
BstSFI CTRYAG 2 cut(s) 34, 464
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 450
BstV2I GAAGAC 1 cut(s) 319
BstX2I RGATCY 1 cut(s) 18
BstXI CCANNNNNNTGG 1 cut(s) 108
BstYI RGATCY 1 cut(s) 18
BsuRI GGCC 1 cut(s) 414
BtsCI GGATG 3 cut(s) 205, 235, 475
BtsIMutI CAGTG 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 269
Csp6I GTAC 2 cut(s) 153, 535
CviAII CATG 5 cut(s) 53, 94, 380, 416, 521
CviQI GTAC 2 cut(s) 153, 535
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
DriI GACNNNNNGTC 1 cut(s) 364
EaeI YGGCCR 1 cut(s) 412
Eam1104I CTCTTC 1 cut(s) 396
Eam1105I GACNNNNNGTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 396
EciI GGCGGA 1 cut(s) 572
Eco47I GGWCC 1 cut(s) 269
Eco57I CTGAAG 2 cut(s) 32, 420
EcoRII CCWGG 2 cut(s) 118, 360
FaeI CATG 5 cut(s) 56, 97, 383, 419, 524
FatI CATG 5 cut(s) 52, 93, 379, 415, 520
Fnu4HI GCNGC 2 cut(s) 373, 464
FokI GGATG 3 cut(s) 212, 242, 482
Fsp4HI GCNGC 2 cut(s) 373, 464
FspBI CTAG 2 cut(s) 257, 596
GluI GCNGC 2 cut(s) 373, 464
GsuI CTGGAG 2 cut(s) 366, 383
HaeIII GGCC 1 cut(s) 414
HapII CCGG 1 cut(s) 568
Hin1II CATG 5 cut(s) 56, 97, 383, 419, 524
HincII GTYRAC 1 cut(s) 177
HindII GTYRAC 1 cut(s) 177
HindIII AAGCTT 2 cut(s) 212, 325
HinfI GANTC 3 cut(s) 260, 365, 477
HpaI GTTAAC 1 cut(s) 177
HpaII CCGG 1 cut(s) 568
Hpy166II GTNNAC 3 cut(s) 153, 177, 513
Hpy188I TCNGA 1 cut(s) 550
Hpy188III TCNNGA 5 cut(s) 162, 218, 264, 345, 495
Hpy8I GTNNAC 3 cut(s) 153, 177, 513
HpyAV CCTTC 3 cut(s) 7, 467, 554
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 4 cut(s) 80, 390, 466, 578
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 5 cut(s) 56, 97, 383, 419, 524
KspAI GTTAAC 1 cut(s) 177
Kzo9I GATC 1 cut(s) 18
Lsp1109I GCAGC 1 cut(s) 450
MaeI CTAG 2 cut(s) 257, 596
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 2 cut(s) 193, 356
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 2 cut(s) 324, 413
MflI RGATCY 1 cut(s) 18
MlsI TGGCCA 1 cut(s) 414
MluCI AATT 3 cut(s) 138, 156, 432
MluNI TGGCCA 1 cut(s) 414
MlyI GAGTC 2 cut(s) 254, 374
MnlI CCTC 4 cut(s) 57, 260, 397, 459
Mox20I TGGCCA 1 cut(s) 414
MscI TGGCCA 1 cut(s) 414
MseI TTAA 2 cut(s) 176, 237
Msp20I TGGCCA 1 cut(s) 414
MspI CCGG 1 cut(s) 568
MspR9I CCNGG 3 cut(s) 120, 362, 569
MvaI CCWGG 2 cut(s) 120, 362
MvnI CGCG 1 cut(s) 372
NciI CCSGG 1 cut(s) 569
NdeII GATC 1 cut(s) 18
NlaIII CATG 5 cut(s) 56, 97, 383, 419, 524
NmuCI GTSAC 1 cut(s) 356
PfeI GAWTC 1 cut(s) 477
PflMI CCANNNNNTGG 1 cut(s) 125
PkrI GCNGC 2 cut(s) 374, 465
PleI GAGTC 2 cut(s) 254, 373
PpsI GAGTC 2 cut(s) 254, 373
PshBI ATTAAT 1 cut(s) 237
Psp1406I AACGTT 1 cut(s) 192
Psp6I CCWGG 2 cut(s) 118, 360
PspGI CCWGG 2 cut(s) 118, 360
PspPI GGNCC 1 cut(s) 269
PstI CTGCAG 1 cut(s) 468
PsuI RGATCY 1 cut(s) 18
RsaI GTAC 2 cut(s) 154, 536
RsaNI GTAC 2 cut(s) 153, 535
SaqAI TTAA 2 cut(s) 176, 237
SatI GCNGC 2 cut(s) 373, 464
Sau3AI GATC 1 cut(s) 18
Sau96I GGNCC 1 cut(s) 269
ScaI AGTACT 1 cut(s) 536
SchI GAGTC 2 cut(s) 254, 374
ScrFI CCNGG 3 cut(s) 120, 362, 569
SfcI CTRYAG 2 cut(s) 34, 464
SinI GGWCC 1 cut(s) 269
Sse9I AATT 3 cut(s) 138, 156, 432
SsiI CCGC 2 cut(s) 372, 557
SspMI CTAG 2 cut(s) 257, 596
StyD4I CCNGG 3 cut(s) 118, 360, 567
TaiI ACGT 1 cut(s) 195
TaqI TCGA 2 cut(s) 330, 480
TasI AATT 3 cut(s) 138, 156, 432
TatI WGTACW 2 cut(s) 152, 534
TauI GCSGC 1 cut(s) 375
TfiI GAWTC 1 cut(s) 477
Tru1I TTAA 2 cut(s) 176, 237
Tru9I TTAA 2 cut(s) 176, 237
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 1 cut(s) 356
TseI GCWGC 1 cut(s) 463
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 6 cut(s) 110, 221, 255, 312, 368, 486
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 1 cut(s) 15
Van91I CCANNNNNTGG 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 269
VspI ATTAAT 1 cut(s) 237
XapI RAATTY 1 cut(s) 138
XspI CTAG 2 cut(s) 257, 596
ZrmI AGTACT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.