Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007108.1

Orthogroup ID

OG0031384

Physical Location & Seq

Genomic Coordinates Forward (+)

25892 .. 26580

Gene Structure 689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgacattcacaaataagaaatctgctcttctacagtttgtggagggaagtccagttcccaaaacaatagtcttttgtaacaagattgagacatgcagaaaagttgagaatgtactatcacgctttgacagaagtggaactcgtgttcaaattctaccaattcattctactctggctcaagaatcacggcttgcaaacatgaaggaagtatcatgtggaatcgactttcctggtggggatcatgttatactcttcgacttccctcgcgatccaagtgagtacgtgcggcgtgtaggaagaactgcctggggcgctggtggagtgggcaaggcatgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006968 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0010501 GO:0014070 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0032870 GO:0034641 GO:0035690 GO:0042221 GO:0042493 GO:0042623 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0070035 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071369 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:1901360 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

112

Amino Acids

12.39

Weight (kDa)

9.3

Isoelectric Point (pI)

57.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	6 - 102	2.3e-12	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031384)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8166076.1_g000001 Rmu_sc0007108.1_g000009

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	267
AciI	CCGC	1 cut(s)	286
AclWI	GGATC	2 cut(s)	246, 263
AcsI	RAATTY	1 cut(s)	150
AfaI	GTAC	2 cut(s)	114, 281
AgsI	TTSAA	1 cut(s)	149
AjnI	CCWGG	2 cut(s)	229, 305
AloI	GAACNNNNNNTCC	4 cut(s)	39, 71, 129, 161
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	2 cut(s)	246, 263
ApoI	RAATTY	1 cut(s)	150
ArsI	GACNNNNNNTTYG	2 cut(s)	54, 86
AspLEI	GCGC	1 cut(s)	314
BauI	CACGAG	1 cut(s)	141
BceAI	ACGGC	1 cut(s)	203
BciT130I	CCWGG	2 cut(s)	231, 307
BcoDI	GTCTC	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	32
BfoI	RGCGCY	1 cut(s)	315
BisI	GCNGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	288
Bme1390I	CCNGG	2 cut(s)	231, 307
BmrFI	CCNGG	2 cut(s)	231, 307
BpuEI	CTTGAG	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	306
Bse1I	ACTGG	1 cut(s)	53
BseBI	CCWGG	2 cut(s)	231, 307
BseDI	CCNNGG	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	238, 268
Bsp68I	TCGCGA	1 cut(s)	267
BspACI	CCGC	1 cut(s)	286
BspFNI	CGCG	1 cut(s)	267
BspPI	GGATC	2 cut(s)	246, 263
BspQI	GCTCTTC	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	2 cut(s)	238, 268
BssSI	CACGAG	1 cut(s)	141
Bst2BI	CACGAG	1 cut(s)	141
Bst2UI	CCWGG	2 cut(s)	231, 307
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	2 cut(s)	33, 257
BstBAI	YACGTR	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	192
BstFNI	CGCG	1 cut(s)	267
BstH2I	RGCGCY	1 cut(s)	315
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	2 cut(s)	241, 271
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	2 cut(s)	238, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNI	CCWGG	2 cut(s)	231, 307
BstNSI	RCATGY	2 cut(s)	96, 336
BstSCI	CCNGG	2 cut(s)	229, 305
BstSFI	CTRYAG	1 cut(s)	32
BstUI	CGCG	1 cut(s)	267
BtuMI	TCGCGA	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	192
CfoI	GCGC	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	113, 280
CviAII	CATG	5 cut(s)	93, 199, 213, 242, 333
CviJI	RGCY	2 cut(s)	176, 190
CviKI_1	RGCY	2 cut(s)	176, 190
CviQI	GTAC	2 cut(s)	113, 280
DpnI	GATC	2 cut(s)	240, 270
DpnII	GATC	2 cut(s)	238, 268
Eam1104I	CTCTTC	2 cut(s)	33, 257
EarI	CTCTTC	2 cut(s)	33, 257
EcoRII	CCWGG	2 cut(s)	229, 305
FaeI	CATG	5 cut(s)	96, 202, 216, 245, 336
FaiI	YATR	6 cut(s)	94, 200, 214, 243, 248, 334
FatI	CATG	5 cut(s)	92, 198, 212, 241, 332
Fnu4HI	GCNGC	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	287
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	1 cut(s)	287
HaeII	RGCGCY	1 cut(s)	315
HhaI	GCGC	1 cut(s)	314
Hin1II	CATG	5 cut(s)	96, 202, 216, 245, 336
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HinfI	GANTC	2 cut(s)	182, 219
Hpy188III	TCNNGA	2 cut(s)	179, 266
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	2 cut(s)	96, 194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	5 cut(s)	96, 202, 216, 245, 336
HspAI	GCGC	1 cut(s)	312
Kzo9I	GATC	2 cut(s)	238, 268
LguI	GCTCTTC	1 cut(s)	33
LpnPI	CCDG	7 cut(s)	66, 158, 216, 243, 292, 300, 319
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	2 cut(s)	240, 270
MboI	GATC	2 cut(s)	238, 268
MboII	GAAGA	3 cut(s)	20, 244, 309
MluCI	AATT	2 cut(s)	150, 159
MnlI	CCTC	2 cut(s)	37, 273
MspR9I	CCNGG	2 cut(s)	231, 307
MvaI	CCWGG	2 cut(s)	231, 307
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	311
NdeII	GATC	2 cut(s)	238, 268
NlaIII	CATG	5 cut(s)	96, 202, 216, 245, 336
NruI	TCGCGA	1 cut(s)	267
NspI	RCATGY	2 cut(s)	96, 336
PciSI	GCTCTTC	1 cut(s)	33
PfeI	GAWTC	2 cut(s)	182, 219
PkrI	GCNGC	1 cut(s)	288
Ppu21I	YACGTR	1 cut(s)	283
Psp6I	CCWGG	2 cut(s)	229, 305
PspGI	CCWGG	2 cut(s)	229, 305
RruI	TCGCGA	1 cut(s)	267
RsaI	GTAC	2 cut(s)	114, 281
RsaNI	GTAC	2 cut(s)	113, 280
SapI	GCTCTTC	1 cut(s)	33
SatI	GCNGC	1 cut(s)	287
Sau3AI	GATC	2 cut(s)	238, 268
ScrFI	CCNGG	2 cut(s)	231, 307
SetI	ASST	1 cut(s)	285
SfcI	CTRYAG	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	177
SmoI	CTYRAG	1 cut(s)	177
Sse9I	AATT	2 cut(s)	150, 159
SsiI	CCGC	1 cut(s)	286
StyD4I	CCNGG	2 cut(s)	229, 305
TaaI	ACNGT	1 cut(s)	36
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	2 cut(s)	222, 255
TasI	AATT	2 cut(s)	150, 159
TatI	WGTACW	1 cut(s)	112
TauI	GCSGC	1 cut(s)	289
TfiI	GAWTC	2 cut(s)	182, 219
TspDTI	ATGAA	2 cut(s)	152, 215
XapI	RAATTY	1 cut(s)	150
XceI	RCATGY	2 cut(s)	96, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.