Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007204.1

Orthogroup ID

OG0031385

Physical Location & Seq

Genomic Coordinates Forward (+)

7719 .. 10709

Gene Structure 2991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgagtgcaagggagaaggcagaaatcggactcggagtgatcgtcggggttaggttggtcggactcagagcttttgtaatcaacgttctcgttgttgtcatcgacggaatccgacaggggggaggagagagagatcatgaagccagggaagcattcctctcaattttggtttcagatggtcgtgcagaatggttagataaaaggcataggaaatgtctaatcctctggcacaggattcaagagtgggctaacataattctgaacttcgtaaaagaaaatggattggaggacagcgttatgactgttgaggaaatacgttctgggatagaatcaagaggaacagagcttcatggtattgaccgtacaattctgatgcgagctctaaaactactagaacagaagggtaagcttgcaatccgtaatatcttggatggttgtacacttgtactgtctaccaaagcagggaaagcaaactgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000814 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031090 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0036452 GO:0042802 GO:0042803 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ESCRT-II

Protein Analysis

159

Amino Acids

17.72

Weight (kDa)

8.9

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ESCRT-II	PF05871	46 - 120	2.1e-20	ESCRT-II complex subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031385)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0007204.1_g000002 Rmu_sc0040047.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	452
AclI	AACGTT	1 cut(s)	84
AfaI	GTAC	3 cut(s)	364, 439, 447
AfiI	CCNNNNNNNGG	2 cut(s)	118, 462
AgsI	TTSAA	1 cut(s)	239
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	4 cut(s)	71, 346, 380, 409
AluI	AGCT	4 cut(s)	71, 346, 380, 409
Alw21I	GWGCWC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	382
Bbv12I	GWGCWC	1 cut(s)	382
BccI	CCATC	2 cut(s)	170, 425
BciT130I	CCWGG	1 cut(s)	145
BfaI	CTAG	1 cut(s)	392
Bme1390I	CCNGG	1 cut(s)	145
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 462
BseBI	CCWGG	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	2 cut(s)	118, 462
BseMII	CTCAG	1 cut(s)	79
BseRI	GAGGAG	1 cut(s)	138
BsgI	GTGCAG	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	382
BslI	CCNNNNNNNGG	2 cut(s)	118, 462
BsmI	GAATGC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp1407I	TGTACA	1 cut(s)	437
Bsp143I	GATC	2 cut(s)	39, 133
BspCNI	CTCAG	1 cut(s)	78
BspHI	TCATGA	1 cut(s)	136
BsrGI	TGTACA	1 cut(s)	437
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	39, 133
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	4 cut(s)	304, 362, 450, 476
BstAUI	TGTACA	1 cut(s)	437
BstC8I	GCNNGC	2 cut(s)	378, 411
BstDEI	CTNAG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	436
BstKTI	GATC	2 cut(s)	42, 136
BstMBI	GATC	2 cut(s)	39, 133
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 467
BstNI	CCWGG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	436
Cac8I	GCNNGC	2 cut(s)	378, 411
CciI	TCATGA	1 cut(s)	136
Csp6I	GTAC	3 cut(s)	363, 438, 446
CviAII	CATG	2 cut(s)	137, 350
CviJI	RGCY	6 cut(s)	71, 143, 248, 346, 380, 409
CviKI_1	RGCY	6 cut(s)	71, 143, 248, 346, 380, 409
CviQI	GTAC	3 cut(s)	363, 438, 446
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	2 cut(s)	41, 135
DpnII	GATC	2 cut(s)	39, 133
Ecl136II	GAGCTC	1 cut(s)	380
Eco24I	GRGCYC	1 cut(s)	382
Eco53kI	GAGCTC	1 cut(s)	380
EcoICRI	GAGCTC	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	143
EcoT38I	GRGCYC	1 cut(s)	382
FaeI	CATG	2 cut(s)	140, 353
FaiI	YATR	5 cut(s)	138, 207, 254, 299, 351
FatI	CATG	2 cut(s)	136, 349
FblI	GTMKAC	1 cut(s)	452
FokI	GGATG	1 cut(s)	443
FriOI	GRGCYC	1 cut(s)	382
FspBI	CTAG	1 cut(s)	392
Hin1II	CATG	2 cut(s)	140, 353
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	5 cut(s)	30, 63, 108, 235, 329
Hpy166II	GTNNAC	2 cut(s)	440, 453
Hpy188I	TCNGA	8 cut(s)	29, 35, 62, 68, 113, 175, 261, 372
Hpy188III	TCNNGA	3 cut(s)	137, 239, 333
Hpy8I	GTNNAC	2 cut(s)	440, 453
Hpy99I	CGWCG	2 cut(s)	47, 107
HpyAV	CCTTC	2 cut(s)	10, 394
HpyCH4III	ACNGT	4 cut(s)	304, 362, 450, 476
HpyCH4IV	ACGT	2 cut(s)	84, 316
HpyCH4V	TGCA	3 cut(s)	8, 185, 413
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 467
HpyF3I	CTNAG	1 cut(s)	65
HpySE526I	ACGT	2 cut(s)	84, 316
Hsp92II	CATG	2 cut(s)	140, 353
Kzo9I	GATC	2 cut(s)	39, 133
LpnPI	CCDG	7 cut(s)	101, 130, 157, 211, 217, 306, 447
LweI	GCATC	1 cut(s)	363
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	2 cut(s)	84, 316
MalI	GATC	2 cut(s)	41, 135
MboI	GATC	2 cut(s)	39, 133
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	3 cut(s)	162, 255, 366
MlyI	GAGTC	2 cut(s)	24, 57
MmeI	TCCRAC	2 cut(s)	40, 136
MnlI	CCTC	6 cut(s)	116, 167, 233, 280, 301, 329
MspR9I	CCNGG	1 cut(s)	145
Mva1269I	GAATGC	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	2 cut(s)	149, 467
NdeII	GATC	2 cut(s)	39, 133
NlaIII	CATG	2 cut(s)	140, 353
PagI	TCATGA	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PctI	GAATGC	1 cut(s)	152
PfeI	GAWTC	3 cut(s)	108, 235, 329
PleI	GAGTC	2 cut(s)	24, 57
PpsI	GAGTC	2 cut(s)	24, 57
Psp124BI	GAGCTC	1 cut(s)	382
Psp1406I	AACGTT	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
PsrI	GAACNNNNNNTAC	2 cut(s)	69, 101
RsaI	GTAC	3 cut(s)	364, 439, 447
RsaNI	GTAC	3 cut(s)	363, 438, 446
SacI	GAGCTC	1 cut(s)	382
Sau3AI	GATC	2 cut(s)	39, 133
SchI	GAGTC	2 cut(s)	24, 57
ScrFI	CCNGG	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	382
SetI	ASST	7 cut(s)	56, 73, 87, 319, 348, 382, 411
SfaNI	GCATC	1 cut(s)	363
Sse9I	AATT	3 cut(s)	162, 255, 366
SspMI	CTAG	1 cut(s)	392
SstI	GAGCTC	1 cut(s)	382
StyD4I	CCNGG	1 cut(s)	143
TaaI	ACNGT	4 cut(s)	304, 362, 450, 476
TaiI	ACGT	2 cut(s)	87, 319
TaqI	TCGA	1 cut(s)	102
TasI	AATT	3 cut(s)	162, 255, 366
TatI	WGTACW	2 cut(s)	437, 445
TfiI	GAWTC	3 cut(s)	108, 235, 329
TspDTI	ATGAA	2 cut(s)	153, 338
TspGWI	ACGGA	2 cut(s)	120, 407
XmiI	GTMKAC	1 cut(s)	452
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.