Rmu_sc0007300.1_g000025

GPR107-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007300.1
OG0031386
Physical Location & Seq
Forward (+)
138725 .. 139024
300 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 300 bp
atgatcatcccattcgacgaattctggttcacacacagaggccgcctcgagctcaacatctccaagatcgccctgtcccagcaaccctgccaggatcctgatctctctcgagtcggcttctttctctgcacccgggactcatggatccacgtcttccagcagctcgaggaggacgagataggctacttgctccatcatgttctccgagaccgacgccgatcagtacacgcttctcttcgccaactgtctccagccactgtttgcaaccggaaagaagggaaagaggacatgggtgcctag

Protein Analysis

99

Amino Acids

11.64

Weight (kDa)

6.5

Isoelectric Point (pI)

64.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAND6-7_N PF21904 2 - 59 1.1e-10 CAND6/7, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031386)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0007300.1_g000025 Rmu_sc0019608.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 293
AciI CCGC 1 cut(s) 43
AclWI GGATC 4 cut(s) 89, 102, 139, 152
AcsI RAATTY 1 cut(s) 20
AcyI GRCGYC 1 cut(s) 214
AfaI GTAC 1 cut(s) 225
AjiI CACGTC 1 cut(s) 151
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 2 cut(s) 52, 163
AluI AGCT 2 cut(s) 52, 163
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 2 cut(s) 201, 252
AlwI GGATC 4 cut(s) 89, 102, 139, 152
AlwNI CAGNNNCTG 1 cut(s) 257
Ama87I CYCGRG 4 cut(s) 47, 108, 132, 164
AoxI GGCC 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 1 cut(s) 20
AsuC2I CCSGG 2 cut(s) 133, 134
AvaI CYCGRG 4 cut(s) 47, 108, 132, 164
BamHI GGATCC 2 cut(s) 94, 144
BanI GGYRCC 1 cut(s) 293
BanII GRGCYC 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 172
BccI CCATC 1 cut(s) 201
BciT130I CCWGG 1 cut(s) 92
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 2 cut(s) 133, 134
BcoDI GTCTC 2 cut(s) 201, 252
BfaI CTAG 1 cut(s) 298
BisI GCNGC 2 cut(s) 43, 161
BlsI GCNGC 2 cut(s) 44, 162
Bme1390I CCNGG 3 cut(s) 92, 133, 134
BmeT110I CYCGRG 4 cut(s) 47, 108, 132, 164
BmgBI CACGTC 1 cut(s) 151
BmiI GGNNCC 3 cut(s) 96, 146, 295
BmrFI CCNGG 3 cut(s) 92, 133, 134
BpiI GAAGAC 1 cut(s) 145
BplI GAGNNNNNCTC 2 cut(s) 30, 62
BpmI CTGGAG 1 cut(s) 234
BpuMI CCSGG 2 cut(s) 133, 134
BsaBI GATNNNNATC 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 214
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 267
Bse8I GATNNNNATC 1 cut(s) 99
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 6
BseJI GATNNNNATC 1 cut(s) 99
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 172
BseYI CCCAGC 1 cut(s) 78
BsgI GTGCAG 1 cut(s) 112
BshFI GGCC 1 cut(s) 42
BshNI GGYRCC 1 cut(s) 293
BsiHKAI GWGCWC 1 cut(s) 54
BsiHKCI CYCGRG 4 cut(s) 47, 108, 132, 164
BsiSI CCGG 2 cut(s) 133, 268
BslFI GGGAC 2 cut(s) 61, 149
BsmAI GTCTC 2 cut(s) 201, 252
BsmFI GGGAC 2 cut(s) 61, 149
BsnI GGCC 1 cut(s) 42
Bso31I GGTCTC 1 cut(s) 201
BsoBI CYCGRG 4 cut(s) 47, 108, 132, 164
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 6 cut(s) 3, 66, 94, 100, 144, 218
BspACI CCGC 1 cut(s) 43
BspANI GGCC 1 cut(s) 42
BspLI GGNNCC 3 cut(s) 96, 146, 295
BspPI GGATC 4 cut(s) 89, 102, 139, 152
BspT107I GGYRCC 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 6 cut(s) 3, 66, 94, 100, 144, 218
BssNI GRCGYC 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 2 cut(s) 246, 259
Bst6I CTCTTC 1 cut(s) 240
BstACI GRCGYC 1 cut(s) 214
BstF5I GGATG 1 cut(s) 6
BstKTI GATC 6 cut(s) 6, 69, 97, 103, 147, 221
BstMAI GTCTC 2 cut(s) 201, 252
BstMBI GATC 6 cut(s) 3, 66, 94, 100, 144, 218
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 3 cut(s) 90, 131, 132
BstV1I GCAGC 1 cut(s) 172
BstV2I GAAGAC 1 cut(s) 145
BstX2I RGATCY 2 cut(s) 94, 144
BstYI RGATCY 2 cut(s) 94, 144
BsuRI GGCC 1 cut(s) 42
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 1 cut(s) 6
BtsIMutI CAGTG 1 cut(s) 255
CaiI CAGNNNCTG 1 cut(s) 257
Cfr9I CCCGGG 1 cut(s) 132
CseI GACGC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 224
CviAII CATG 3 cut(s) 141, 197, 289
CviJI RGCY 6 cut(s) 42, 52, 117, 163, 183, 254
CviKI_1 RGCY 6 cut(s) 42, 52, 117, 163, 183, 254
CviQI GTAC 1 cut(s) 224
DpnI GATC 6 cut(s) 5, 68, 96, 102, 146, 220
DpnII GATC 6 cut(s) 3, 66, 94, 100, 144, 218
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 54
Eco31I GGTCTC 1 cut(s) 201
Eco53kI GAGCTC 1 cut(s) 52
Eco88I CYCGRG 4 cut(s) 47, 108, 132, 164
EcoICRI GAGCTC 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 54
FaeI CATG 3 cut(s) 144, 200, 292
FaiI YATR 3 cut(s) 142, 198, 290
FaqI GGGAC 2 cut(s) 61, 149
FatI CATG 3 cut(s) 140, 196, 288
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 43, 161
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 2 cut(s) 43, 161
FspBI CTAG 1 cut(s) 298
GluI GCNGC 2 cut(s) 43, 161
GsaI CCCAGC 1 cut(s) 82
GsuI CTGGAG 1 cut(s) 234
HaeIII GGCC 1 cut(s) 42
HapII CCGG 2 cut(s) 133, 268
HgaI GACGC 1 cut(s) 222
Hin1I GRCGYC 1 cut(s) 214
Hin1II CATG 3 cut(s) 144, 200, 292
HinfI GANTC 2 cut(s) 111, 137
HpaII CCGG 2 cut(s) 133, 268
Hpy166II GTNNAC 2 cut(s) 30, 226
Hpy188I TCNGA 1 cut(s) 206
Hpy188III TCNNGA 2 cut(s) 98, 108
Hpy8I GTNNAC 2 cut(s) 30, 226
Hpy99I CGWCG 2 cut(s) 20, 216
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 2 cut(s) 246, 259
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 2 cut(s) 129, 264
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 214
Hsp92II CATG 3 cut(s) 144, 200, 292
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 6 cut(s) 3, 66, 94, 100, 144, 218
LmnI GCTCC 1 cut(s) 195
Lsp1109I GCAGC 1 cut(s) 172
MaeI CTAG 1 cut(s) 298
MaeII ACGT 1 cut(s) 150
MalI GATC 6 cut(s) 5, 68, 96, 102, 146, 220
MboI GATC 6 cut(s) 3, 66, 94, 100, 144, 218
MboII GAAGA 2 cut(s) 145, 227
MflI RGATCY 2 cut(s) 94, 144
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 1 cut(s) 20
MlyI GAGTC 2 cut(s) 120, 131
MnlI CCTC 5 cut(s) 32, 56, 160, 163, 277
MspI CCGG 2 cut(s) 133, 268
MspR9I CCNGG 3 cut(s) 92, 133, 134
MvaI CCWGG 1 cut(s) 92
NciI CCSGG 2 cut(s) 133, 134
NdeII GATC 6 cut(s) 3, 66, 94, 100, 144, 218
NlaIII CATG 3 cut(s) 144, 200, 292
NlaIV GGNNCC 3 cut(s) 96, 146, 295
PaeR7I CTCGAG 3 cut(s) 47, 108, 164
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PkrI GCNGC 2 cut(s) 44, 162
PleI GAGTC 2 cut(s) 119, 131
PpsI GAGTC 2 cut(s) 119, 131
Psp124BI GAGCTC 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 90
PspFI CCCAGC 1 cut(s) 78
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 3 cut(s) 96, 146, 295
PspXI VCTCGAGB 2 cut(s) 47, 164
PstNI CAGNNNCTG 1 cut(s) 257
PsuI RGATCY 2 cut(s) 94, 144
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
SacI GAGCTC 1 cut(s) 54
SatI GCNGC 2 cut(s) 43, 161
Sau3AI GATC 6 cut(s) 3, 66, 94, 100, 144, 218
SchI GAGTC 2 cut(s) 120, 131
ScrFI CCNGG 3 cut(s) 92, 133, 134
SduI GDGCHC 1 cut(s) 54
SetI ASST 3 cut(s) 54, 153, 165
Sfr274I CTCGAG 3 cut(s) 47, 108, 164
SlaI CTCGAG 3 cut(s) 47, 108, 164
SmaI CCCGGG 1 cut(s) 134
SmlI CTYRAG 3 cut(s) 47, 108, 164
SmoI CTYRAG 3 cut(s) 47, 108, 164
Sse9I AATT 1 cut(s) 20
SsiI CCGC 1 cut(s) 43
SspMI CTAG 1 cut(s) 298
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 3 cut(s) 90, 131, 132
TaaI ACNGT 2 cut(s) 246, 259
TaiI ACGT 1 cut(s) 153
TaqI TCGA 4 cut(s) 15, 48, 109, 165
TaqII GACCGA 1 cut(s) 225
TasI AATT 1 cut(s) 20
TatI WGTACW 1 cut(s) 223
TauI GCSGC 1 cut(s) 45
TscAI CASTG 1 cut(s) 262
TseI GCWGC 1 cut(s) 160
TspMI CCCGGG 1 cut(s) 132
TspRI CASTG 1 cut(s) 262
XapI RAATTY 1 cut(s) 20
XhoI CTCGAG 3 cut(s) 47, 108, 164
XmaI CCCGGG 1 cut(s) 132
XspI CTAG 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.