Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019608.1

Orthogroup ID

OG0031386

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1770

Gene Structure 1770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019608.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 491 bp

cacaccggacctttctctcctccatcgagatctggacctcgtcggtccgcgacgatcggcatatgatcatcccattcgacgaattctggttcacacacagaggccgcctcgagctcaacatctccaagatcgccctgtcccagcaaccctgcccggatcctgatctctctagagtcggcttctttctctgcacccgggactcatggatccacgtcttccagcagctcgaggaggacgagataggctacttgctccatcatgttctccgagaccgacgccgatcagtacacgcttctcttcgccaactgtctccagccactgtttgcaaccggaaagaagggaaagaggacatgggtgcccagatttttttttttgagcggcgattggcggccaatgaaaggatcccggcggcctgtggcctgaatccgacgaagttgactggaatcctgcgaccggtgaccagaatcccgtggccagtgacgaggctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016192 GO:0030135 GO:0030136 GO:0030276 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0032050 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0070013 GO:0072583 GO:0097708 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lung_7-TM_R

Protein Analysis

162

Amino Acids

18.95

Weight (kDa)

9.16

Isoelectric Point (pI)

60.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031386)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0007300.1_g000025 Rmu_sc0019608.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	355
AccBSI	CCGCTC	1 cut(s)	378
AccII	CGCG	1 cut(s)	50
AciI	CCGC	5 cut(s)	48, 105, 378, 388, 409
AclWI	GGATC	6 cut(s)	151, 164, 201, 214, 396, 409
AcoI	YGGCCR	2 cut(s)	389, 472
AcsI	RAATTY	1 cut(s)	82
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	2 cut(s)	398, 453
AgeI	ACCGGT	1 cut(s)	453
AjiI	CACGTC	1 cut(s)	213
AluBI	AGCT	2 cut(s)	114, 225
AluI	AGCT	2 cut(s)	114, 225
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	2 cut(s)	263, 314
AlwI	GGATC	6 cut(s)	151, 164, 201, 214, 396, 409
AlwNI	CAGNNNCTG	1 cut(s)	319
Ama87I	CYCGRG	3 cut(s)	109, 194, 226
AoxI	GGCC	5 cut(s)	102, 389, 410, 417, 472
ApeKI	GCWGC	1 cut(s)	222
ApoI	RAATTY	1 cut(s)	82
AsiGI	ACCGGT	1 cut(s)	453
AspS9I	GGNCC	3 cut(s)	8, 35, 45
AsuC2I	CCSGG	4 cut(s)	154, 195, 196, 406
AsuHPI	GGTGA	1 cut(s)	468
AvaI	CYCGRG	3 cut(s)	109, 194, 226
AvaII	GGWCC	3 cut(s)	8, 35, 45
BaeGI	GKGCMC	1 cut(s)	360
BalI	TGGCCA	1 cut(s)	474
BamHI	GGATCC	3 cut(s)	156, 206, 401
BanI	GGYRCC	1 cut(s)	355
BanII	GRGCYC	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	2 cut(s)	31, 263
BclI	TGATCA	1 cut(s)	65
BcnI	CCSGG	4 cut(s)	154, 195, 196, 406
BcoDI	GTCTC	2 cut(s)	263, 314
BfaI	CTAG	2 cut(s)	170, 489
BglII	AGATCT	1 cut(s)	29
BisI	GCNGC	5 cut(s)	105, 223, 379, 389, 410
BlsI	GCNGC	5 cut(s)	106, 224, 380, 390, 411
Bme1390I	CCNGG	4 cut(s)	154, 195, 196, 406
Bme18I	GGWCC	3 cut(s)	8, 35, 45
BmeT110I	CYCGRG	3 cut(s)	109, 194, 226
BmgBI	CACGTC	1 cut(s)	213
BmgT120I	GGNCC	3 cut(s)	8, 35, 45
BmiI	GGNNCC	4 cut(s)	158, 208, 357, 403
BmrFI	CCNGG	4 cut(s)	154, 195, 196, 406
BpiI	GAAGAC	1 cut(s)	207
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
BpmI	CTGGAG	1 cut(s)	296
BpuMI	CCSGG	4 cut(s)	154, 195, 196, 406
BsaBI	GATNNNNATC	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	2 cut(s)	194, 469
BsaWI	WCCGGW	3 cut(s)	5, 329, 453
Bsc4I	CCNNNNNNNGG	2 cut(s)	398, 453
Bse118I	RCCGGY	1 cut(s)	453
Bse1I	ACTGG	2 cut(s)	444, 475
Bse8I	GATNNNNATC	1 cut(s)	161
BseDI	CCNNGG	2 cut(s)	194, 469
BseGI	GGATG	1 cut(s)	68
BseJI	GATNNNNATC	1 cut(s)	161
BseLI	CCNNNNNNNGG	2 cut(s)	398, 453
BseNI	ACTGG	2 cut(s)	444, 475
BseRI	GAGGAG	2 cut(s)	9, 244
BseSI	GKGCMC	1 cut(s)	360
BseXI	GCAGC	1 cut(s)	234
BseYI	CCCAGC	1 cut(s)	140
BsgI	GTGCAG	1 cut(s)	174
Bsh1236I	CGCG	1 cut(s)	50
Bsh1285I	CGRYCG	2 cut(s)	57, 454
BshFI	GGCC	5 cut(s)	104, 391, 412, 419, 474
BshNI	GGYRCC	1 cut(s)	355
BshTI	ACCGGT	1 cut(s)	453
BsiEI	CGRYCG	2 cut(s)	57, 454
BsiHKAI	GWGCWC	1 cut(s)	116
BsiHKCI	CYCGRG	3 cut(s)	109, 194, 226
BsiSI	CCGG	6 cut(s)	6, 154, 195, 330, 406, 454
BslFI	GGGAC	2 cut(s)	123, 211
BslI	CCNNNNNNNGG	2 cut(s)	398, 453
BsmAI	GTCTC	2 cut(s)	263, 314
BsmFI	GGGAC	2 cut(s)	123, 211
BsnI	GGCC	5 cut(s)	104, 391, 412, 419, 474
Bso31I	GGTCTC	1 cut(s)	263
BsoBI	CYCGRG	3 cut(s)	109, 194, 226
Bsp1286I	GDGCHC	2 cut(s)	116, 360
Bsp143I	GATC	9 cut(s)	29, 54, 65, 128, 156, 162, 206, 280, 401
BspACI	CCGC	5 cut(s)	48, 105, 378, 388, 409
BspANI	GGCC	5 cut(s)	104, 391, 412, 419, 474
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	4 cut(s)	158, 208, 357, 403
BspPI	GGATC	6 cut(s)	151, 164, 201, 214, 396, 409
BspT107I	GGYRCC	1 cut(s)	355
BspTNI	GGTCTC	1 cut(s)	263
BsrBI	CCGCTC	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	453
BsrI	ACTGG	2 cut(s)	444, 475
BssAI	RCCGGY	1 cut(s)	453
BssECI	CCNNGG	2 cut(s)	194, 469
BssMI	GATC	9 cut(s)	29, 54, 65, 128, 156, 162, 206, 280, 401
BssNI	GRCGYC	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	308, 321
Bst6I	CTCTTC	1 cut(s)	302
BstACI	GRCGYC	1 cut(s)	276
BstDSI	CCRYGG	1 cut(s)	469
BstEII	GGTNACC	1 cut(s)	456
BstF5I	GGATG	1 cut(s)	68
BstFNI	CGCG	1 cut(s)	50
BstKTI	GATC	9 cut(s)	32, 57, 68, 131, 159, 165, 209, 283, 404
BstMAI	GTCTC	2 cut(s)	263, 314
BstMBI	GATC	9 cut(s)	29, 54, 65, 128, 156, 162, 206, 280, 401
BstMCI	CGRYCG	2 cut(s)	57, 454
BstPI	GGTNACC	1 cut(s)	456
BstSCI	CCNGG	4 cut(s)	152, 193, 194, 404
BstSLI	GKGCMC	1 cut(s)	360
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	234
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	4 cut(s)	29, 156, 206, 401
BstYI	RGATCY	4 cut(s)	29, 156, 206, 401
BsuRI	GGCC	5 cut(s)	104, 391, 412, 419, 474
BtgI	CCRYGG	1 cut(s)	469
BtrI	CACGTC	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	68
BtsIMutI	CAGTG	2 cut(s)	317, 482
CaiI	CAGNNNCTG	1 cut(s)	319
Cfr10I	RCCGGY	1 cut(s)	453
Cfr13I	GGNCC	3 cut(s)	8, 35, 45
Cfr9I	CCCGGG	1 cut(s)	194
CpoI	CGGWCCG	1 cut(s)	45
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	286
CspAI	ACCGGT	1 cut(s)	453
CspI	CGGWCCG	1 cut(s)	45
CviAII	CATG	3 cut(s)	203, 259, 351
CviQI	GTAC	1 cut(s)	286
DpnI	GATC	9 cut(s)	31, 56, 67, 130, 158, 164, 208, 282, 403
DpnII	GATC	9 cut(s)	29, 54, 65, 128, 156, 162, 206, 280, 401
EaeI	YGGCCR	2 cut(s)	389, 472
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Ecl136II	GAGCTC	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	116
Eco31I	GGTCTC	1 cut(s)	263
Eco47I	GGWCC	3 cut(s)	8, 35, 45
Eco53kI	GAGCTC	1 cut(s)	114
Eco88I	CYCGRG	3 cut(s)	109, 194, 226
Eco91I	GGTNACC	1 cut(s)	456
EcoICRI	GAGCTC	1 cut(s)	114
EcoO65I	GGTNACC	1 cut(s)	456
EcoRI	GAATTC	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	116
FaeI	CATG	3 cut(s)	206, 262, 354
FaiI	YATR	5 cut(s)	62, 64, 204, 260, 352
FaqI	GGGAC	2 cut(s)	123, 211
FatI	CATG	3 cut(s)	202, 258, 350
FauNDI	CATATG	1 cut(s)	62
FbaI	TGATCA	1 cut(s)	65
Fnu4HI	GCNGC	5 cut(s)	105, 223, 379, 389, 410
FokI	GGATG	1 cut(s)	55
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	5 cut(s)	105, 223, 379, 389, 410
FspBI	CTAG	2 cut(s)	170, 489
GluI	GCNGC	5 cut(s)	105, 223, 379, 389, 410
GsaI	CCCAGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	5 cut(s)	104, 391, 412, 419, 474
HapII	CCGG	6 cut(s)	6, 154, 195, 330, 406, 454
HgaI	GACGC	1 cut(s)	284
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	3 cut(s)	206, 262, 354
HincII	GTYRAC	1 cut(s)	437
HindII	GTYRAC	1 cut(s)	437
HinfI	GANTC	5 cut(s)	173, 199, 423, 443, 464
HpaII	CCGG	6 cut(s)	6, 154, 195, 330, 406, 454
HphI	GGTGA	1 cut(s)	468
Hpy166II	GTNNAC	3 cut(s)	92, 288, 437
Hpy188I	TCNGA	2 cut(s)	268, 428
Hpy188III	TCNNGA	4 cut(s)	27, 33, 160, 170
Hpy8I	GTNNAC	3 cut(s)	92, 288, 437
Hpy99I	CGWCG	5 cut(s)	45, 55, 82, 278, 432
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	2 cut(s)	308, 321
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	2 cut(s)	191, 326
HpySE526I	ACGT	1 cut(s)	212
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	3 cut(s)	206, 262, 354
Ksp22I	TGATCA	1 cut(s)	65
Kzo9I	GATC	9 cut(s)	29, 54, 65, 128, 156, 162, 206, 280, 401
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	1 cut(s)	234
MaeI	CTAG	2 cut(s)	170, 489
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	2 cut(s)	456, 477
MalI	GATC	9 cut(s)	31, 56, 67, 130, 158, 164, 208, 282, 403
MbiI	CCGCTC	1 cut(s)	378
MboI	GATC	9 cut(s)	29, 54, 65, 128, 156, 162, 206, 280, 401
MboII	GAAGA	2 cut(s)	207, 289
MflI	RGATCY	4 cut(s)	29, 156, 206, 401
MhlI	GDGCHC	2 cut(s)	116, 360
MlsI	TGGCCA	1 cut(s)	474
MluCI	AATT	1 cut(s)	82
MluNI	TGGCCA	1 cut(s)	474
MlyI	GAGTC	2 cut(s)	182, 193
MmeI	TCCRAC	1 cut(s)	451
MnlI	CCTC	8 cut(s)	30, 48, 94, 118, 222, 225, 339, 476
Mox20I	TGGCCA	1 cut(s)	474
MscI	TGGCCA	1 cut(s)	474
Msp20I	TGGCCA	1 cut(s)	474
MspI	CCGG	6 cut(s)	6, 154, 195, 330, 406, 454
MspR9I	CCNGG	4 cut(s)	154, 195, 196, 406
MvnI	CGCG	1 cut(s)	50
NciI	CCSGG	4 cut(s)	154, 195, 196, 406
NdeI	CATATG	1 cut(s)	62
NdeII	GATC	9 cut(s)	29, 54, 65, 128, 156, 162, 206, 280, 401
NlaIII	CATG	3 cut(s)	206, 262, 354
NlaIV	GGNNCC	4 cut(s)	158, 208, 357, 403
NmuCI	GTSAC	2 cut(s)	456, 477
PaeR7I	CTCGAG	2 cut(s)	109, 226
PcsI	WCGNNNNNNNCGW	1 cut(s)	233
PfeI	GAWTC	3 cut(s)	423, 443, 464
PflFI	GACNNNGTC	1 cut(s)	39
PinAI	ACCGGT	1 cut(s)	453
PkrI	GCNGC	5 cut(s)	106, 224, 380, 390, 411
Ple19I	CGATCG	1 cut(s)	57
PleI	GAGTC	2 cut(s)	181, 193
PpsI	GAGTC	2 cut(s)	181, 193
Psp124BI	GAGCTC	1 cut(s)	116
PspEI	GGTNACC	1 cut(s)	456
PspFI	CCCAGC	1 cut(s)	140
PspN4I	GGNNCC	4 cut(s)	158, 208, 357, 403
PspPI	GGNCC	3 cut(s)	8, 35, 45
PspXI	VCTCGAGB	2 cut(s)	109, 226
PstNI	CAGNNNCTG	1 cut(s)	319
PsuI	RGATCY	4 cut(s)	29, 156, 206, 401
PsyI	GACNNNGTC	1 cut(s)	39
PvuI	CGATCG	1 cut(s)	57
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
Rsr2I	CGGWCCG	1 cut(s)	45
RsrII	CGGWCCG	1 cut(s)	45
SacI	GAGCTC	1 cut(s)	116
SatI	GCNGC	5 cut(s)	105, 223, 379, 389, 410
Sau3AI	GATC	9 cut(s)	29, 54, 65, 128, 156, 162, 206, 280, 401
Sau96I	GGNCC	3 cut(s)	8, 35, 45
SchI	GAGTC	2 cut(s)	182, 193
ScrFI	CCNGG	4 cut(s)	154, 195, 196, 406
SduI	GDGCHC	2 cut(s)	116, 360
SetI	ASST	5 cut(s)	13, 40, 116, 215, 227
Sfr274I	CTCGAG	2 cut(s)	109, 226
SinI	GGWCC	3 cut(s)	8, 35, 45
SlaI	CTCGAG	2 cut(s)	109, 226
SmaI	CCCGGG	1 cut(s)	196
SmlI	CTYRAG	2 cut(s)	109, 226
SmoI	CTYRAG	2 cut(s)	109, 226
Sse9I	AATT	1 cut(s)	82
SsiI	CCGC	5 cut(s)	48, 105, 378, 388, 409
SspMI	CTAG	2 cut(s)	170, 489
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	4 cut(s)	152, 193, 194, 404
TaaI	ACNGT	2 cut(s)	308, 321
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	4 cut(s)	26, 77, 110, 227
TaqII	GACCGA	2 cut(s)	33, 287
TasI	AATT	1 cut(s)	82
TatI	WGTACW	1 cut(s)	285
TauI	GCSGC	4 cut(s)	107, 381, 391, 412
TfiI	GAWTC	3 cut(s)	423, 443, 464
TscAI	CASTG	2 cut(s)	324, 482
TseFI	GTSAC	2 cut(s)	456, 477
TseI	GCWGC	1 cut(s)	222
Tsp45I	GTSAC	2 cut(s)	456, 477
TspDTI	ATGAA	1 cut(s)	410
TspMI	CCCGGG	1 cut(s)	194
TspRI	CASTG	2 cut(s)	324, 482
Tth111I	GACNNNGTC	1 cut(s)	39
VpaK11BI	GGWCC	3 cut(s)	8, 35, 45
XapI	RAATTY	1 cut(s)	82
XbaI	TCTAGA	1 cut(s)	169
XhoI	CTCGAG	2 cut(s)	109, 226
XmaI	CCCGGG	1 cut(s)	194
XspI	CTAG	2 cut(s)	170, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.